Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002302

Physical Location & Seq

Genomic Coordinates Forward (+)

43393223 .. 43408105

Gene Structure 14883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCCTCGTCTTCCTCTGAGTGCTCTATATGTCTCAACGACCTCTCAAGTGGCTGTGGCCGGACGGTCGTGACGCTTCAATGCTCGCATACTTTTCATTTGGATTGCATTGGTTCTGCATTTAATGCGAGGGGTGCAATGGAATGCCCCATTTGCCGGGCGAATGAAAATGGCACATGGAGGAGGTATTCTGAGAATCACGGTTTTGAACAGAACTTGCATTTTGAGAATCAACATGAGGACTACTTTCCAGAGCCTATTTCTATGATTCCACCGGGAGATCCTCAATCTATTTGGCAGTGGGATCCAATATTGTCGGACTATAGATTTGCTGTAGACCCCAATGGTGGTATTCCTAATAATCATCAACCGAATGACCCTTCTGAAGTATCCGAACCAACAGAGAGTCCTCTACGTTATGGAATTTGTGATGATTGTATCAACCACCACCTTTCAAGTGGCCATGCTGGTCATAGTAATGGGGTTTCAGTTCCAGCTGGAAACCTGGGAATTCCTAGCGCTGATGTTAATGCCATTCCCAGTGATTTCATAATTCCTCCTGCCGGTTTTAATGGTGTACAGAATGACATAAGAATGCCAACGGCCACCTATACAAATGAGCAGGAGATCATCGTCGTGCACCATTATTATCCACAACAGCGGGCTGCTTCATCTGTCCCGGAGAACCAGGTGGCTTCTGAGGTTCAAGATGAAGAGGAAGTATCTCAGGCTCACACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

247

Amino Acids

27.07

Weight (kDa)

4.61

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	7 - 53	4.5e-09	Ring finger domain
zf-RING_11	PF17123	7 - 37	6.2e-09	RING-like zinc finger
zf-RING_UBOX	PF13445	8 - 50	6.9e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53570 AT3G53570 AT3G53570 AT3G53570 AT3G53570
fragaria_vesca	FvH4_4g25400 FvH4_4g25400 FvH4_4g25400 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570
malus_domestica	MD12G1136400.v1.1 MD16G1103500.v1.1
prunus_persica	Prupe.1G242500_v2.0.a1 Prupe.1G242500_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1
pyrus_communis	pycom13g09030
rosa_chinensis	RchiOBHm_Chr3g0467621 RchiOBHm_Chr4g0432711
rosa_laevigata	RLG00000006818 RLG00000024484
rosa_multiflora	Rmu_co8522421.1_g000003 Rmu_sc0012180.1_g000012
rosa_roxburghii	Rroxscaffold_5G00374170 Rroxscaffold_6G00413540
rosa_rugosa	Rorug03G0088600 Rorug04G0261900 Rorug04G0262000 Rorug04G0262000
rosa_samantha	Rh3AG136900 Rh3BG158700 Rh3CG158300 Rh3DG159200 Rh4AG316300 Rh4BG324300 Rh4CG339300 Rh4DG319600
rosa_wichuraiana	Rw3G012970 Rw4G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	336
AciI	CCGC	1 cut(s)	661
AclWI	GGATC	3 cut(s)	275, 299, 312
AcoI	YGGCCR	3 cut(s)	58, 460, 603
AcsI	RAATTY	2 cut(s)	423, 510
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	579
AfeI	AGCGCT	1 cut(s)	520
AfiI	CCNNNNNNNGG	3 cut(s)	156, 347, 563
AgsI	TTSAA	4 cut(s)	80, 209, 456, 707
AjnI	CCWGG	2 cut(s)	504, 687
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw21I	GWGCWC	2 cut(s)	26, 642
Alw26I	GTCTC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	638
AlwI	GGATC	3 cut(s)	275, 299, 312
Aor51HI	AGCGCT	1 cut(s)	520
AoxI	GGCC	4 cut(s)	3, 58, 460, 603
ApaLI	GTGCAC	1 cut(s)	638
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	2 cut(s)	423, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	1 cut(s)	521
AsuC2I	CCSGG	3 cut(s)	158, 276, 680
BaeGI	GKGCMC	1 cut(s)	642
BalI	TGGCCA	1 cut(s)	462
BamHI	GGATCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	2 cut(s)	26, 642
BbvI	GCAGC	1 cut(s)	652
BceAI	ACGGC	1 cut(s)	618
BciT130I	CCWGG	2 cut(s)	506, 689
BciVI	GTATCC	1 cut(s)	400
BcnI	CCSGG	3 cut(s)	158, 276, 680
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	2 cut(s)	322, 333
BfoI	RGCGCY	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	400
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
Bme1390I	CCNGG	5 cut(s)	158, 276, 506, 680, 689
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	5 cut(s)	158, 276, 506, 680, 689
BmrI	ACTGGG	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	3
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	3 cut(s)	158, 276, 680
BsaJI	CCNNGG	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 347, 563
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	1 cut(s)	540
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	506, 689
BseDI	CCNNGG	1 cut(s)	505
BseLI	CCNNNNNNNGG	3 cut(s)	156, 347, 563
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	4 cut(s)	9, 183, 690, 740
BseNI	ACTGG	1 cut(s)	540
BseRI	GAGGAG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	642
BseXI	GCAGC	1 cut(s)	652
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	5, 60, 462, 605
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	26, 642
BsiSI	CCGG	5 cut(s)	61, 157, 275, 564, 680
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	3 cut(s)	156, 347, 563
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	2 cut(s)	149, 600
BsnI	GGCC	4 cut(s)	5, 60, 462, 605
Bsp1286I	GDGCHC	2 cut(s)	26, 642
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	280, 304, 627
BspACI	CCGC	1 cut(s)	661
BspANI	GGCC	4 cut(s)	5, 60, 462, 605
BspCNI	CTCAG	4 cut(s)	10, 184, 691, 739
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	275, 299, 312
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	540
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	3 cut(s)	280, 304, 627
Bst2UI	CCWGG	2 cut(s)	506, 689
Bst4CI	ACNGT	2 cut(s)	67, 203
Bst6I	CTCTTC	1 cut(s)	708
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	86, 663
BstDEI	CTNAG	4 cut(s)	18, 192, 699, 726
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	3 cut(s)	283, 307, 630
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	3 cut(s)	280, 304, 627
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 134, 153
BstNI	CCWGG	2 cut(s)	506, 689
BstSCI	CCNGG	5 cut(s)	156, 274, 504, 678, 687
BstSFI	CTRYAG	2 cut(s)	322, 333
BstSLI	GKGCMC	1 cut(s)	642
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	3
BstX2I	RGATCY	2 cut(s)	280, 304
BstYI	RGATCY	2 cut(s)	280, 304
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	4 cut(s)	5, 60, 462, 605
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	305, 547
Cac8I	GCNNGC	2 cut(s)	86, 663
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	563
CseI	GACGC	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	687
Csp6I	GTAC	1 cut(s)	578
CviAII	CATG	3 cut(s)	177, 236, 464
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	4 cut(s)	18, 192, 699, 726
DpnI	GATC	3 cut(s)	282, 306, 629
DpnII	GATC	3 cut(s)	280, 304, 627
EaeI	YGGCCR	3 cut(s)	58, 460, 603
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco47III	AGCGCT	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	510
EcoRII	CCWGG	2 cut(s)	504, 687
FaeI	CATG	3 cut(s)	180, 239, 467
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	3 cut(s)	176, 235, 463
FauI	CCCGC	1 cut(s)	654
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	666
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	1 cut(s)	516
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	666
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	4 cut(s)	5, 60, 462, 605
HapII	CCGG	5 cut(s)	61, 157, 275, 564, 680
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	180, 239, 467
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	4 cut(s)	196, 229, 268, 406
HpaII	CCGG	5 cut(s)	61, 157, 275, 564, 680
Hpy166II	GTNNAC	3 cut(s)	337, 578, 640
Hpy188I	TCNGA	6 cut(s)	19, 193, 319, 385, 394, 700
Hpy188III	TCNNGA	3 cut(s)	70, 251, 707
Hpy8I	GTNNAC	3 cut(s)	337, 578, 640
Hpy99I	CGWCG	1 cut(s)	638
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	2 cut(s)	67, 203
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	5 cut(s)	108, 119, 137, 220, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 134, 153
HpyF3I	CTNAG	4 cut(s)	18, 192, 699, 726
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	3 cut(s)	180, 239, 467
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	3 cut(s)	280, 304, 627
Lsp1109I	GCAGC	1 cut(s)	652
MabI	ACCWGGT	1 cut(s)	687
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	282, 306, 629
MboI	GATC	3 cut(s)	280, 304, 627
MboII	GAAGA	2 cut(s)	3, 725
MflI	RGATCY	2 cut(s)	280, 304
MhlI	GDGCHC	2 cut(s)	26, 642
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	3 cut(s)	423, 510, 552
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	297
Mox20I	TGGCCA	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	3 cut(s)	123, 528, 570
MslI	CAYNNNNRTG	3 cut(s)	477, 593, 635
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	2 cut(s)	497, 661
MspI	CCGG	5 cut(s)	61, 157, 275, 564, 680
MspR9I	CCNGG	5 cut(s)	158, 276, 506, 680, 689
Mva1269I	GAATGC	2 cut(s)	149, 600
MvaI	CCWGG	2 cut(s)	506, 689
MwoI	GCNNNNNNNGC	3 cut(s)	125, 134, 153
NciI	CCSGG	3 cut(s)	158, 276, 680
NdeII	GATC	3 cut(s)	280, 304, 627
NlaIII	CATG	3 cut(s)	180, 239, 467
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	70
PctI	GAATGC	2 cut(s)	149, 600
PfeI	GAWTC	3 cut(s)	196, 229, 268
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	1 cut(s)	667
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	504, 687
PspGI	CCWGG	2 cut(s)	504, 687
PspN4I	GGNNCC	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	280, 304
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	3 cut(s)	477, 593, 635
SaqAI	TTAA	3 cut(s)	123, 528, 570
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	3 cut(s)	280, 304, 627
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	5 cut(s)	158, 276, 506, 680, 689
SduI	GDGCHC	2 cut(s)	26, 642
SetI	ASST	9 cut(s)	45, 188, 418, 453, 499, 507, 611, 693, 705
SexAI	ACCWGGT	1 cut(s)	687
SfcI	CTRYAG	2 cut(s)	322, 333
SmiMI	CAYNNNNRTG	3 cut(s)	477, 593, 635
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	3 cut(s)	423, 510, 552
SsiI	CCGC	1 cut(s)	661
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	5 cut(s)	156, 274, 504, 678, 687
TaaI	ACNGT	2 cut(s)	67, 203
TaiI	ACGT	1 cut(s)	418
TasI	AATT	3 cut(s)	423, 510, 552
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	3 cut(s)	196, 229, 268
Tru1I	TTAA	3 cut(s)	123, 528, 570
Tru9I	TTAA	3 cut(s)	123, 528, 570
TscAI	CASTG	2 cut(s)	305, 547
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	5 cut(s)	86, 180, 538, 660, 726
TspRI	CASTG	2 cut(s)	305, 547
VneI	GTGCAC	1 cut(s)	638
XapI	RAATTY	2 cut(s)	423, 510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.