Rroxscaffold_5G00374170

Serine threonine-protein kinase AFC2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
55220770 .. 55224601
3832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374170.1

Sequence Viewer

Length: 1296 bp
ATGGAGATGGATTACGTGACGGAGTTTCCTCTCTCTCATGATCGGCGTCCCAGAAAGAGGCCCAGGTTCGCTTGGGACGGCCCCCAATCCCACCCAAAGGCTCAGTCAGGAATGTATTATGAGCAAGATGTTGGAAATGGAACAAGCTATGGACATCCGAGGGTACACCCAGACCATCCTAGTCTTTTTGTAAAGGGGTTGACTCAAAAAGGCTCTCCCCCGTGGCGTGAGGATGACAAAGATGGACATTACATGTTTGCTGTTGGAGAGAATTTAACTTCTCGCTATAAAATTCACAGGAAAATTGGGGAAGGAACTTTTGGTCAGGTTTTGGAATGCTGGGACAGGGAAACAAAGGAGATGGTAGCTATAAAAGTTGTCAGAAGTATCAAGAAATACCGTGAAGCAGCAATGATAGAAATTGATGTGCTACAGTTGCTTGGAAAGTATGACAGAAATGGCAGTCGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAACCATATATGTATAGTATTTGAGATGCTTGGACCAAGCTTATATGATTTCCTCCGGAAAAATAATTATCGCCCATTTCCGGTTGATCTTGTCCGCGAGCTTGGCAGGCAACTATTGGAATGTGTAGCATTCATACATGATATGCGTCTCATCCATACTGACTTGAAGCCTGAGAATATACTTTTTGTTTCGCCAGAATATATTAAAGTACCGGACTACAGGTTCACATCCCGGTCGCCAAAAGATGGAACCTGTTATAGAAGGTTGCCAAAGTCTAGTGCTATCAAAGTTATTGATTTTGGTAGCACAGCGTATGAGCATCAAGAGCACAACTATATTGTATCGACAAGGCACTACCGCGCACCTGAGGTCATTCTAGGACTTGGATGGAGTTATCCATGTGACATTTGGAGTATTGGCTGTATCTTGGTAGAGTTGTGTTCGGGAGAAGCCTTGTTTCAGACACATGAGAACTTAGAACACCTGGCTATGATGGAAAGGGTACTAGGTCCATTGCCACAGCACATGTTAAAAAGAGCAGACCGCCATGCTGAGAAGTATGTCAGGAGGGGTAGGTTGGACTGGCCTGAAGGTGCAAATTCTCGGGAAAGTATTAAATCTGTTTTAAAGCTACACCGTCTCCAGAATATAGTGATGCAGCATGTAGATCATTCAGCTGGTGATCTGATCGACCTCCTGCAAGGTCTCCTTAGATTTGAGCCCTCTAATAGGCTAACAGCTCCTGAAGCCCTAAGGCATCCCTTCTTTACCAGGGATCATTACAGAAGGTTTTAG

Protein Analysis

431

Amino Acids

50.53

Weight (kDa)

8.93

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 96 - 423 3.5e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 97 - 333 4.9e-20 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 746
AccII CGCG 2 cut(s) 597, 861
AccIII TCCGGA 1 cut(s) 555
AciI CCGC 3 cut(s) 595, 859, 1045
AclWI GGATC 1 cut(s) 1284
AcsI RAATTY 3 cut(s) 271, 291, 1099
AcuI CTGAAG 2 cut(s) 1110, 1266
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 3 cut(s) 165, 711, 1005
AfiI CCNNNNNNNGG 5 cut(s) 57, 97, 580, 746, 1230
AflIII ACRYGT 2 cut(s) 252, 1026
AgsI TTSAA 2 cut(s) 476, 667
AjnI CCWGG 3 cut(s) 62, 984, 1271
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AloI GAACNNNNNNTCC 2 cut(s) 707, 739
AluBI AGCT 7 cut(s) 147, 368, 540, 601, 1132, 1178, 1241
AluI AGCT 7 cut(s) 147, 368, 540, 601, 1132, 1178, 1241
Alw21I GWGCWC 1 cut(s) 831
Alw26I GTCTC 3 cut(s) 653, 1145, 1211
AlwI GGATC 1 cut(s) 1284
AlwNI CAGNNNCTG 1 cut(s) 1244
Ama87I CYCGRG 1 cut(s) 1104
Aor13HI TCCGGA 1 cut(s) 555
AoxI GGCC 3 cut(s) 59, 79, 1085
ApeKI GCWGC 2 cut(s) 407, 1159
ApoI RAATTY 3 cut(s) 271, 291, 1099
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspLEI GCGC 1 cut(s) 863
AspS9I GGNCC 4 cut(s) 60, 80, 533, 1010
AsuC2I CCSGG 1 cut(s) 733
AsuHPI GGTGA 1 cut(s) 1193
AvaI CYCGRG 1 cut(s) 1104
AvaII GGWCC 2 cut(s) 533, 1010
AxyI CCTNAGG 2 cut(s) 867, 1253
BanII GRGCYC 1 cut(s) 1224
Bbv12I GWGCWC 1 cut(s) 831
BbvI GCAGC 2 cut(s) 419, 1171
BccI CCATC 6 cut(s) 183, 236, 355, 740, 882, 988
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 3 cut(s) 64, 986, 1273
BcnI CCSGG 1 cut(s) 733
BcoDI GTCTC 3 cut(s) 653, 1145, 1211
BfaI CTAG 4 cut(s) 180, 777, 878, 1007
BfmI CTRYAG 2 cut(s) 431, 718
BisI GCNGC 2 cut(s) 408, 1160
BlsI GCNGC 2 cut(s) 409, 1161
Bme1390I CCNGG 4 cut(s) 64, 733, 986, 1273
Bme18I GGWCC 2 cut(s) 533, 1010
BmeT110I CYCGRG 1 cut(s) 1104
BmgT120I GGNCC 4 cut(s) 60, 80, 533, 1010
BmiI GGNNCC 2 cut(s) 82, 751
BmrFI CCNGG 4 cut(s) 64, 733, 986, 1273
BmsI GCATC 4 cut(s) 516, 829, 1146, 1267
BpmI CTGGAG 1 cut(s) 1127
BpuMI CCSGG 1 cut(s) 733
BsaAI YACGTR 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 1211
BsaJI CCNNGG 4 cut(s) 62, 158, 221, 1272
BsaWI WCCGGW 3 cut(s) 555, 580, 712
BsaXI ACNNNNNCTCC 2 cut(s) 1125, 1155
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 97, 580, 746, 1230
Bse1I ACTGG 2 cut(s) 491, 1088
Bse21I CCTNAGG 2 cut(s) 867, 1253
Bse3DI GCAATG 2 cut(s) 417, 1013
BseAI TCCGGA 1 cut(s) 555
BseBI CCWGG 3 cut(s) 64, 986, 1273
BseDI CCNNGG 4 cut(s) 62, 158, 221, 1272
BseGI GGATG 7 cut(s) 154, 175, 238, 651, 728, 893, 1258
BseLI CCNNNNNNNGG 5 cut(s) 57, 97, 580, 746, 1230
BseMI GCAATG 2 cut(s) 417, 1013
BseMII CTCAG 4 cut(s) 116, 663, 858, 1044
BseNI ACTGG 2 cut(s) 491, 1088
BseXI GCAGC 2 cut(s) 419, 1171
BseYI CCCAGC 1 cut(s) 339
Bsh1236I CGCG 2 cut(s) 597, 861
Bsh1285I CGRYCG 1 cut(s) 737
BshFI GGCC 3 cut(s) 61, 81, 1087
BsiEI CGRYCG 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 831
BsiHKCI CYCGRG 1 cut(s) 1104
BsiSI CCGG 4 cut(s) 556, 581, 713, 733
BslFI GGGAC 3 cut(s) 33, 89, 356
BslI CCNNNNNNNGG 5 cut(s) 57, 97, 580, 746, 1230
BsmAI GTCTC 3 cut(s) 653, 1145, 1211
BsmBI CGTCTC 2 cut(s) 653, 1145
BsmFI GGGAC 3 cut(s) 33, 89, 356
BsmI GAATGC 2 cut(s) 341, 629
BsnI GGCC 3 cut(s) 61, 81, 1087
Bso31I GGTCTC 1 cut(s) 1211
BsoBI CYCGRG 1 cut(s) 1104
Bsp1286I GDGCHC 2 cut(s) 831, 1224
Bsp13I TCCGGA 1 cut(s) 555
Bsp143I GATC 6 cut(s) 40, 586, 1168, 1183, 1188, 1276
BspACI CCGC 3 cut(s) 595, 859, 1045
BspANI GGCC 3 cut(s) 61, 81, 1087
BspCNI CTCAG 4 cut(s) 115, 664, 859, 1045
BspEI TCCGGA 1 cut(s) 555
BspFNI CGCG 2 cut(s) 597, 861
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 82, 751
BspPI GGATC 1 cut(s) 1284
BspTNI GGTCTC 1 cut(s) 1211
BsrDI GCAATG 2 cut(s) 417, 1013
BsrI ACTGG 2 cut(s) 491, 1088
BssECI CCNNGG 4 cut(s) 62, 158, 221, 1272
BssMI GATC 6 cut(s) 40, 586, 1168, 1183, 1188, 1276
BssNI GRCGYC 1 cut(s) 46
Bst2UI CCWGG 3 cut(s) 64, 986, 1273
Bst4CI ACNGT 3 cut(s) 401, 435, 1139
BstACI GRCGYC 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 599, 608
BstDEI CTNAG 7 cut(s) 102, 672, 867, 976, 1053, 1211, 1253
BstDSI CCRYGG 1 cut(s) 221
BstENI CCTNNNNNAGG 1 cut(s) 1228
BstF5I GGATG 7 cut(s) 154, 175, 238, 651, 728, 893, 1258
BstFNI CGCG 2 cut(s) 597, 861
BstHHI GCGC 1 cut(s) 863
BstKTI GATC 6 cut(s) 43, 589, 1171, 1186, 1191, 1279
BstMAI GTCTC 3 cut(s) 653, 1145, 1211
BstMBI GATC 6 cut(s) 40, 586, 1168, 1183, 1188, 1276
BstMCI CGRYCG 1 cut(s) 737
BstMWI GCNNNNNNNGC 5 cut(s) 436, 603, 607, 826, 1247
BstNI CCWGG 3 cut(s) 64, 986, 1273
BstNSI RCATGY 3 cut(s) 256, 1030, 1166
BstSCI CCNGG 4 cut(s) 62, 731, 984, 1271
BstSFI CTRYAG 2 cut(s) 431, 718
BstUI CGCG 2 cut(s) 597, 861
BstV1I GCAGC 2 cut(s) 419, 1171
Bsu36I CCTNAGG 2 cut(s) 867, 1253
BsuRI GGCC 3 cut(s) 61, 81, 1087
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 7 cut(s) 154, 175, 238, 651, 728, 893, 1258
Cac8I GCNNGC 2 cut(s) 599, 608
CaiI CAGNNNCTG 1 cut(s) 1244
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 863
Cfr13I GGNCC 4 cut(s) 60, 80, 533, 1010
CseI GACGC 2 cut(s) 35, 635
Csp6I GTAC 3 cut(s) 164, 710, 1004
CviAII CATG 8 cut(s) 38, 253, 638, 900, 968, 1027, 1049, 1163
CviQI GTAC 3 cut(s) 164, 710, 1004
DdeI CTNAG 7 cut(s) 102, 672, 867, 976, 1053, 1211, 1253
DpnI GATC 6 cut(s) 42, 588, 1170, 1185, 1190, 1278
DpnII GATC 6 cut(s) 40, 586, 1168, 1183, 1188, 1276
DraI TTTAAA 1 cut(s) 1128
Eco24I GRGCYC 1 cut(s) 1224
Eco31I GGTCTC 1 cut(s) 1211
Eco47I GGWCC 2 cut(s) 533, 1010
Eco57I CTGAAG 2 cut(s) 1110, 1266
Eco81I CCTNAGG 2 cut(s) 867, 1253
Eco88I CYCGRG 1 cut(s) 1104
EcoNI CCTNNNNNAGG 1 cut(s) 1228
EcoRII CCWGG 3 cut(s) 62, 984, 1271
EcoT38I GRGCYC 1 cut(s) 1224
Esp3I CGTCTC 2 cut(s) 653, 1145
FaeI CATG 8 cut(s) 41, 256, 641, 903, 971, 1030, 1052, 1166
FalI AAGNNNNNCTT 2 cut(s) 1194, 1226
FaqI GGGAC 3 cut(s) 33, 89, 356
FatI CATG 8 cut(s) 37, 252, 637, 899, 967, 1026, 1048, 1162
Fnu4HI GCNGC 2 cut(s) 408, 1160
FokI GGATG 7 cut(s) 141, 162, 245, 638, 715, 900, 1245
FriOI GRGCYC 1 cut(s) 1224
Fsp4HI GCNGC 2 cut(s) 408, 1160
FspBI CTAG 4 cut(s) 180, 777, 878, 1007
GlaI GCGC 1 cut(s) 862
GluI GCNGC 2 cut(s) 408, 1160
GsaI CCCAGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 1127
HaeIII GGCC 3 cut(s) 61, 81, 1087
HapII CCGG 4 cut(s) 556, 581, 713, 733
HgaI GACGC 2 cut(s) 35, 635
HhaI GCGC 1 cut(s) 863
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 8 cut(s) 41, 256, 641, 903, 971, 1030, 1052, 1166
Hin6I GCGC 1 cut(s) 861
HinP1I GCGC 1 cut(s) 861
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 538
HinfI GANTC 1 cut(s) 202
HpaII CCGG 4 cut(s) 556, 581, 713, 733
HphI GGTGA 1 cut(s) 1193
Hpy166II GTNNAC 3 cut(s) 166, 201, 726
Hpy188I TCNGA 4 cut(s) 159, 383, 963, 1188
Hpy8I GTNNAC 3 cut(s) 166, 201, 726
HpyAV CCTTC 5 cut(s) 305, 756, 1085, 1273, 1281
HpyCH4III ACNGT 3 cut(s) 401, 435, 1139
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 1097, 1159, 1201
HpyF10VI GCNNNNNNNGC 5 cut(s) 436, 603, 607, 826, 1247
HpyF3I CTNAG 7 cut(s) 102, 672, 867, 976, 1053, 1211, 1253
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 8 cut(s) 41, 256, 641, 903, 971, 1030, 1052, 1166
HspAI GCGC 1 cut(s) 861
Kpn2I TCCGGA 1 cut(s) 555
Kzo9I GATC 6 cut(s) 40, 586, 1168, 1183, 1188, 1276
LmnI GCTCC 1 cut(s) 1246
Lsp1109I GCAGC 2 cut(s) 419, 1171
LweI GCATC 4 cut(s) 516, 829, 1146, 1267
MaeI CTAG 4 cut(s) 180, 777, 878, 1007
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 3 cut(s) 16, 500, 902
MalI GATC 6 cut(s) 42, 588, 1170, 1185, 1190, 1278
MboI GATC 6 cut(s) 40, 586, 1168, 1183, 1188, 1276
MhlI GDGCHC 2 cut(s) 831, 1224
MluCI AATT 6 cut(s) 271, 291, 303, 420, 565, 1099
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 3 cut(s) 112, 244, 1059
MnlI CCTC 9 cut(s) 39, 51, 153, 223, 563, 862, 1062, 1205, 1234
MroI TCCGGA 1 cut(s) 555
MseI TTAA 5 cut(s) 275, 705, 1031, 1116, 1127
MspA1I CMGCKG 1 cut(s) 1178
MspI CCGG 4 cut(s) 556, 581, 713, 733
MspR9I CCNGG 4 cut(s) 64, 733, 986, 1273
Mva1269I GAATGC 2 cut(s) 341, 629
MvaI CCWGG 3 cut(s) 64, 986, 1273
MvnI CGCG 2 cut(s) 597, 861
MwoI GCNNNNNNNGC 5 cut(s) 436, 603, 607, 826, 1247
NciI CCSGG 1 cut(s) 733
NdeII GATC 6 cut(s) 40, 586, 1168, 1183, 1188, 1276
NlaIII CATG 8 cut(s) 41, 256, 641, 903, 971, 1030, 1052, 1166
NlaIV GGNNCC 2 cut(s) 82, 751
NmuCI GTSAC 2 cut(s) 16, 902
NspI RCATGY 3 cut(s) 256, 1030, 1166
PagI TCATGA 1 cut(s) 37
PciI ACATGT 2 cut(s) 252, 1026
PctI GAATGC 2 cut(s) 341, 629
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 2 cut(s) 409, 1161
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 16
PscI ACATGT 2 cut(s) 252, 1026
Psp6I CCWGG 3 cut(s) 62, 984, 1271
PspFI CCCAGC 1 cut(s) 339
PspGI CCWGG 3 cut(s) 62, 984, 1271
PspN4I GGNNCC 2 cut(s) 82, 751
PspPI GGNCC 4 cut(s) 60, 80, 533, 1010
PstNI CAGNNNCTG 1 cut(s) 1244
PvuII CAGCTG 1 cut(s) 1178
RsaI GTAC 3 cut(s) 165, 711, 1005
RsaNI GTAC 3 cut(s) 164, 710, 1004
SaqAI TTAA 5 cut(s) 275, 705, 1031, 1116, 1127
SatI GCNGC 2 cut(s) 408, 1160
Sau3AI GATC 6 cut(s) 40, 586, 1168, 1183, 1188, 1276
Sau96I GGNCC 4 cut(s) 60, 80, 533, 1010
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 4 cut(s) 64, 733, 986, 1273
SduI GDGCHC 2 cut(s) 831, 1224
SfaNI GCATC 4 cut(s) 516, 829, 1146, 1267
SfcI CTRYAG 2 cut(s) 431, 718
SinI GGWCC 2 cut(s) 533, 1010
Sse9I AATT 6 cut(s) 271, 291, 303, 420, 565, 1099
SsiI CCGC 3 cut(s) 595, 859, 1045
SspMI CTAG 4 cut(s) 180, 777, 878, 1007
StyD4I CCNGG 4 cut(s) 62, 731, 984, 1271
TaaI ACNGT 3 cut(s) 401, 435, 1139
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 845, 1191
TasI AATT 6 cut(s) 271, 291, 303, 420, 565, 1099
Tru1I TTAA 5 cut(s) 275, 705, 1031, 1116, 1127
Tru9I TTAA 5 cut(s) 275, 705, 1031, 1116, 1127
TseFI GTSAC 2 cut(s) 16, 902
TseI GCWGC 2 cut(s) 407, 1159
Tsp45I GTSAC 2 cut(s) 16, 902
TspDTI ATGAA 1 cut(s) 622
TspGWI ACGGA 2 cut(s) 35, 496
Van91I CCANNNNNTGG 1 cut(s) 746
VpaK11BI GGWCC 2 cut(s) 533, 1010
XagI CCTNNNNNAGG 1 cut(s) 1228
XapI RAATTY 3 cut(s) 271, 291, 1099
XceI RCATGY 3 cut(s) 256, 1030, 1166
XcmI CCANNNNNNNNNTGG 1 cut(s) 906
XspI CTAG 4 cut(s) 180, 777, 878, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.