Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002302

Physical Location & Seq

Genomic Coordinates Forward (+)

49032589 .. 49036373

Gene Structure 3785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG324300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGATGGATTACGTGACGGAGTTTCCTCTCTCTCATATTGATCGGCGTCCCAGAAAGAGGCCCAGGTTCGCTTGGGACGGCCCCCAATCCCACCCAAAGGCTCAGTCAGGAATGTATTATGAGCAAGATGTTGGAAATGGAACAAGCTATGGACATCCGAGGGTACACCCAGACCATCCTAGTCTTTTTGTAAAGGGGTTGACTCAAAAAGGCTCTCCCCCATGGCGAGAGGACGACAAGGATGGACATTACATGTTTGCTGTTGGAGAGAATTTAACTTCTCGCTATAAAATTCACAGGAAAATTGGGGAAGGAACTTTTGGTCAGGTTTTGGAATGCTGGGACAGGGAAACAAAGGAGATGGTAGCTATAAAAGTTGTCAGAAGTATCAAGAAATACCGTGAAGCAGCAATGATAGAAATTGATGTGCTACAGTTGCTTGGAAAGTATGACAGAAATGGCAGTCGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAACCATATATGTATAGTATTTGAGATGCTTGGACCAAGCTTATATGATTTCCTCCGGAAAAATAATTATCGCCCATTTCCGGTTGATCTTGTCCGCGAGCTTGGCAGGCAACTATTGGAATGTGTAGCATTCATACATGATATGCGTCTCATCCATACTGACTTGAAGCCTGAGAATATACTTTTTGTTTCGCCAGAATATATTAAAGTACCGGACTACAGGTTCACATCCCGGTCGCCAAAAGATGGAACCTGTTATAGAAGGTTGCCAAAGTCTAGTGCTATCAAAGTTATTGATTTTGGTAGCACAGCGTATGAGCATCAAGAGCACAACTATATTGTATCGACAAGGCACTACCGCGCACCTGAGGTCATTCTAGGACTTGGATGGAGTTATCCATGTGACATTTGGAGTATTGGCTGCATCTTGGTAGAGTTGTGTTCGGTATGTCTCATTATATTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

323

Amino Acids

37.75

Weight (kDa)

8.58

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	97 - 316	4.1e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	98 - 318	3.9e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53570 AT3G53570 AT3G53570 AT3G53570 AT3G53570
fragaria_vesca	FvH4_4g25400 FvH4_4g25400 FvH4_4g25400 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570
malus_domestica	MD12G1136400.v1.1 MD16G1103500.v1.1
prunus_persica	Prupe.1G242500_v2.0.a1 Prupe.1G242500_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1
pyrus_communis	pycom13g09030
rosa_chinensis	RchiOBHm_Chr3g0467621 RchiOBHm_Chr4g0432711
rosa_laevigata	RLG00000006818 RLG00000024484
rosa_multiflora	Rmu_co8522421.1_g000003 Rmu_sc0012180.1_g000012
rosa_roxburghii	Rroxscaffold_5G00374170 Rroxscaffold_6G00413540
rosa_rugosa	Rorug03G0088600 Rorug04G0261900 Rorug04G0262000 Rorug04G0262000
rosa_samantha	Rh3AG136900 Rh3BG158700 Rh3CG158300 Rh3DG159200 Rh4AG316300 Rh4BG324300 Rh4CG339300 Rh4DG319600
rosa_wichuraiana	Rw3G012970 Rw4G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccII	CGCG	2 cut(s)	600, 864
AccIII	TCCGGA	1 cut(s)	558
AciI	CCGC	2 cut(s)	598, 862
AcsI	RAATTY	2 cut(s)	274, 294
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	168, 714
AfiI	CCNNNNNNNGG	4 cut(s)	60, 100, 583, 749
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	479, 670
AjnI	CCWGG	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AloI	GAACNNNNNNTCC	2 cut(s)	710, 742
AluBI	AGCT	4 cut(s)	150, 371, 543, 604
AluI	AGCT	4 cut(s)	150, 371, 543, 604
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	2 cut(s)	656, 959
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	2 cut(s)	62, 82
ApeKI	GCWGC	2 cut(s)	410, 924
ApoI	RAATTY	2 cut(s)	274, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspLEI	GCGC	1 cut(s)	866
AspS9I	GGNCC	3 cut(s)	63, 83, 536
AsuC2I	CCSGG	1 cut(s)	736
AvaII	GGWCC	1 cut(s)	536
AxyI	CCTNAGG	1 cut(s)	870
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	2 cut(s)	422, 911
BccI	CCATC	5 cut(s)	186, 239, 358, 743, 885
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	736
BcoDI	GTCTC	2 cut(s)	656, 959
BfaI	CTAG	3 cut(s)	183, 780, 881
BfmI	CTRYAG	2 cut(s)	434, 721
BisI	GCNGC	2 cut(s)	411, 925
BlsI	GCNGC	2 cut(s)	412, 926
Bme1390I	CCNGG	2 cut(s)	67, 736
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	3 cut(s)	63, 83, 536
BmiI	GGNNCC	2 cut(s)	85, 754
BmrFI	CCNGG	2 cut(s)	67, 736
BmsI	GCATC	3 cut(s)	519, 832, 936
BpuMI	CCSGG	1 cut(s)	736
BsaAI	YACGTR	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	3 cut(s)	65, 161, 224
BsaWI	WCCGGW	3 cut(s)	558, 583, 715
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 100, 583, 749
Bse1I	ACTGG	1 cut(s)	494
Bse21I	CCTNAGG	1 cut(s)	870
Bse3DI	GCAATG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	65, 161, 224
BseGI	GGATG	6 cut(s)	157, 178, 250, 654, 731, 896
BseLI	CCNNNNNNNGG	4 cut(s)	60, 100, 583, 749
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	119, 666, 861
BseNI	ACTGG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	422, 911
BseYI	CCCAGC	1 cut(s)	342
Bsh1236I	CGCG	2 cut(s)	600, 864
Bsh1285I	CGRYCG	1 cut(s)	740
BshFI	GGCC	2 cut(s)	64, 84
BsiEI	CGRYCG	1 cut(s)	740
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	4 cut(s)	559, 584, 716, 736
BslFI	GGGAC	3 cut(s)	36, 92, 359
BslI	CCNNNNNNNGG	4 cut(s)	60, 100, 583, 749
BsmAI	GTCTC	2 cut(s)	656, 959
BsmBI	CGTCTC	1 cut(s)	656
BsmFI	GGGAC	3 cut(s)	36, 92, 359
BsmI	GAATGC	2 cut(s)	344, 632
BsnI	GGCC	2 cut(s)	64, 84
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	43, 589
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	2 cut(s)	598, 862
BspANI	GGCC	2 cut(s)	64, 84
BspCNI	CTCAG	3 cut(s)	118, 667, 862
BspEI	TCCGGA	1 cut(s)	558
BspFNI	CGCG	2 cut(s)	600, 864
BspLI	GGNNCC	2 cut(s)	85, 754
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	65, 161, 224
BssMI	GATC	2 cut(s)	43, 589
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	404, 438
BstACI	GRCGYC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	602, 611
BstDEI	CTNAG	3 cut(s)	105, 675, 870
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	6 cut(s)	157, 178, 250, 654, 731, 896
BstFNI	CGCG	2 cut(s)	600, 864
BstHHI	GCGC	1 cut(s)	866
BstKTI	GATC	2 cut(s)	46, 592
BstMAI	GTCTC	2 cut(s)	656, 959
BstMBI	GATC	2 cut(s)	43, 589
BstMCI	CGRYCG	1 cut(s)	740
BstMWI	GCNNNNNNNGC	4 cut(s)	439, 606, 610, 829
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	65, 734
BstSFI	CTRYAG	2 cut(s)	434, 721
BstUI	CGCG	2 cut(s)	600, 864
BstV1I	GCAGC	2 cut(s)	422, 911
Bsu36I	CCTNAGG	1 cut(s)	870
BsuRI	GGCC	2 cut(s)	64, 84
BtgI	CCRYGG	1 cut(s)	224
BtsCI	GGATG	6 cut(s)	157, 178, 250, 654, 731, 896
Cac8I	GCNNGC	2 cut(s)	602, 611
CfoI	GCGC	1 cut(s)	866
Cfr13I	GGNCC	3 cut(s)	63, 83, 536
CseI	GACGC	2 cut(s)	38, 638
Csp6I	GTAC	2 cut(s)	167, 713
CviAII	CATG	4 cut(s)	225, 256, 641, 903
CviQI	GTAC	2 cut(s)	167, 713
DdeI	CTNAG	3 cut(s)	105, 675, 870
DpnI	GATC	2 cut(s)	45, 591
DpnII	GATC	2 cut(s)	43, 589
Eco130I	CCWWGG	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	536
Eco81I	CCTNAGG	1 cut(s)	870
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	4 cut(s)	228, 259, 644, 906
FaqI	GGGAC	3 cut(s)	36, 92, 359
FatI	CATG	4 cut(s)	224, 255, 640, 902
Fnu4HI	GCNGC	2 cut(s)	411, 925
FokI	GGATG	6 cut(s)	144, 165, 257, 641, 718, 903
Fsp4HI	GCNGC	2 cut(s)	411, 925
FspBI	CTAG	3 cut(s)	183, 780, 881
GlaI	GCGC	1 cut(s)	865
GluI	GCNGC	2 cut(s)	411, 925
GsaI	CCCAGC	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	64, 84
HapII	CCGG	4 cut(s)	559, 584, 716, 736
HgaI	GACGC	2 cut(s)	38, 638
HhaI	GCGC	1 cut(s)	866
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	228, 259, 644, 906
Hin6I	GCGC	1 cut(s)	864
HinP1I	GCGC	1 cut(s)	864
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	4 cut(s)	559, 584, 716, 736
Hpy166II	GTNNAC	3 cut(s)	169, 204, 729
Hpy188I	TCNGA	2 cut(s)	162, 386
Hpy188III	TCNNGA	4 cut(s)	111, 394, 559, 827
Hpy8I	GTNNAC	3 cut(s)	169, 204, 729
HpyAV	CCTTC	2 cut(s)	308, 759
HpyCH4III	ACNGT	2 cut(s)	404, 438
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	927
HpyF10VI	GCNNNNNNNGC	4 cut(s)	439, 606, 610, 829
HpyF3I	CTNAG	3 cut(s)	105, 675, 870
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	4 cut(s)	228, 259, 644, 906
HspAI	GCGC	1 cut(s)	864
Kpn2I	TCCGGA	1 cut(s)	558
Kzo9I	GATC	2 cut(s)	43, 589
Lsp1109I	GCAGC	2 cut(s)	422, 911
LweI	GCATC	3 cut(s)	519, 832, 936
MaeI	CTAG	3 cut(s)	183, 780, 881
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	3 cut(s)	16, 503, 905
MalI	GATC	2 cut(s)	45, 591
MboI	GATC	2 cut(s)	43, 589
MhlI	GDGCHC	1 cut(s)	834
MluCI	AATT	5 cut(s)	274, 294, 306, 423, 568
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	115, 247
MnlI	CCTC	6 cut(s)	39, 54, 156, 226, 566, 865
MroI	TCCGGA	1 cut(s)	558
MseI	TTAA	2 cut(s)	278, 708
MspI	CCGG	4 cut(s)	559, 584, 716, 736
MspR9I	CCNGG	2 cut(s)	67, 736
Mva1269I	GAATGC	2 cut(s)	344, 632
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	2 cut(s)	600, 864
MwoI	GCNNNNNNNGC	4 cut(s)	439, 606, 610, 829
NciI	CCSGG	1 cut(s)	736
NcoI	CCATGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	43, 589
NlaIII	CATG	4 cut(s)	228, 259, 644, 906
NlaIV	GGNNCC	2 cut(s)	85, 754
NmuCI	GTSAC	2 cut(s)	16, 905
NspI	RCATGY	1 cut(s)	259
PciI	ACATGT	1 cut(s)	255
PctI	GAATGC	2 cut(s)	344, 632
PflMI	CCANNNNNTGG	1 cut(s)	749
PkrI	GCNGC	2 cut(s)	412, 926
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	16
PscI	ACATGT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	85, 754
PspPI	GGNCC	3 cut(s)	63, 83, 536
RsaI	GTAC	2 cut(s)	168, 714
RsaNI	GTAC	2 cut(s)	167, 713
SaqAI	TTAA	2 cut(s)	278, 708
SatI	GCNGC	2 cut(s)	411, 925
Sau3AI	GATC	2 cut(s)	43, 589
Sau96I	GGNCC	3 cut(s)	63, 83, 536
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	67, 736
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	3 cut(s)	519, 832, 936
SfcI	CTRYAG	2 cut(s)	434, 721
SinI	GGWCC	1 cut(s)	536
Sse9I	AATT	5 cut(s)	274, 294, 306, 423, 568
SsiI	CCGC	2 cut(s)	598, 862
SspMI	CTAG	3 cut(s)	183, 780, 881
StyD4I	CCNGG	2 cut(s)	65, 734
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	404, 438
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	848
TasI	AATT	5 cut(s)	274, 294, 306, 423, 568
Tru1I	TTAA	2 cut(s)	278, 708
Tru9I	TTAA	2 cut(s)	278, 708
TseFI	GTSAC	2 cut(s)	16, 905
TseI	GCWGC	2 cut(s)	410, 924
Tsp45I	GTSAC	2 cut(s)	16, 905
TspDTI	ATGAA	1 cut(s)	625
TspGWI	ACGGA	2 cut(s)	35, 499
Van91I	CCANNNNNTGG	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	2 cut(s)	274, 294
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	909
XspI	CTAG	3 cut(s)	183, 780, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.