Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002302

Physical Location & Seq

Genomic Coordinates Reverse (-)

6023523 .. 6026466

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGATGGATTACGTGTCGGAGTTCCCTCTTTCACACATTGATCGGCGTCCAAGAAAACGCCCCAGGTTTGCTTTGGACCCCCCTCAGCCTCACCCAAAGGCTCAGTCAGGAATATATTATGAGCAAGATGTTGGAAATGGGACAAGCTTTGGACATACGAGGGTACTTCCAGACCATCCTAGTGTTTTTGTAAAGGGGTTGACTCAAAAAGGCTCTCCCCCGCGGCGAGATGATGACAAAGATGGACATTACATGTTTGCGCTCGGAGAAAATTTAACATCTCGCTATAAGATCCACCGAAAAATTGGTGAAGGAACTTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAAGAAATGGTAGCTATAAAAGTTGTCAGGAGTATCAAGAAATACCGTGAAGCAGCAATGATTGAAGTTGATGTGCTACAGTTGCTTGGGAAGTATGACAGAAATGGAAGTCGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAACCATATATGTATCGTATTTGAGATGCTTGGGCCAAGCTTATACGATTTCCTCCGGAAAAATAATTATCACGCATTTCGGATCGATCTTGTCCGCGAACTTGGCAGGCAACTGTTGGAATGTGTAGCATTCATGCATGATATGCGTCTCATCCATACCGACCTGAAGCCTGAGAACATACTATTTGTTTCTTCAGAATACATTAAAGTACCCGACAATAAGTTTACATCCAGGCCACCAAAAGATGGAACCAGTTATAAAAGGTTGCCAAAGTCTAGTGCTATCAAGGTTATTGATTTTGGCAGCACAGCCTATGAGCATCAAGAGCACAATTACATTGTGTCGACAAGGCACTACCGGGCACCTGAGGTTATTCTGGGACTTGGATGGAGTTATCCATGTGACATATGGAGTGTTGGTTGCATCTTGGTAGAGTTGTGTTCGGGAGAAGCTTTGTTTCAGACACACGAGAACTTGGAACACCTAGCTATGATGGAGAGGGTTTTAGGTCCAATGCCACATTACATGTTGAAAAGAGTGGAGTATGTGGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

354

Amino Acids

41.1

Weight (kDa)

8.53

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53570 AT3G53570 AT3G53570 AT3G53570 AT3G53570
fragaria_vesca	FvH4_4g25400 FvH4_4g25400 FvH4_4g25400 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570
malus_domestica	MD12G1136400.v1.1 MD16G1103500.v1.1
prunus_persica	Prupe.1G242500_v2.0.a1 Prupe.1G242500_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1
pyrus_communis	pycom13g09030
rosa_chinensis	RchiOBHm_Chr3g0467621 RchiOBHm_Chr4g0432711
rosa_laevigata	RLG00000006818 RLG00000024484
rosa_multiflora	Rmu_co8522421.1_g000003 Rmu_sc0012180.1_g000012
rosa_roxburghii	Rroxscaffold_5G00374170 Rroxscaffold_6G00413540
rosa_rugosa	Rorug03G0088600 Rorug04G0261900 Rorug04G0262000 Rorug04G0262000
rosa_samantha	Rh3AG136900 Rh3BG158700 Rh3CG158300 Rh3DG159200 Rh4AG316300 Rh4BG324300 Rh4CG339300 Rh4DG319600
rosa_wichuraiana	Rw3G012970 Rw4G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	865
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccI	GTMKAC	1 cut(s)	848
AccII	CGCG	2 cut(s)	226, 600
AccIII	TCCGGA	1 cut(s)	558
AciI	CCGC	3 cut(s)	224, 226, 598
AclWI	GGATC	2 cut(s)	289, 593
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	2 cut(s)	681, 689
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	168, 714
AfiI	CCNNNNNNNGG	1 cut(s)	749
AflIII	ACRYGT	3 cut(s)	15, 255, 1029
AgsI	TTSAA	3 cut(s)	422, 479, 1036
AjnI	CCWGG	2 cut(s)	65, 734
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	5 cut(s)	150, 371, 543, 956, 992
AluI	AGCT	5 cut(s)	150, 371, 543, 956, 992
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	2 cut(s)	289, 593
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	2 cut(s)	536, 737
ApeKI	GCWGC	2 cut(s)	410, 807
ApoI	RAATTY	1 cut(s)	274
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	79, 536, 1013
AsuC2I	CCSGG	1 cut(s)	863
AsuHPI	GGTGA	2 cut(s)	86, 323
AvaII	GGWCC	2 cut(s)	79, 1013
AxyI	CCTNAGG	1 cut(s)	870
BaeGI	GKGCMC	1 cut(s)	868
BanI	GGYRCC	1 cut(s)	865
BauI	CACGAG	1 cut(s)	971
Bbv12I	GWGCWC	1 cut(s)	834
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	422, 819
BccI	CCATC	5 cut(s)	186, 239, 743, 885, 991
BciT130I	CCWGG	2 cut(s)	67, 736
BcnI	CCSGG	1 cut(s)	863
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	3 cut(s)	183, 780, 989
BfmI	CTRYAG	1 cut(s)	434
BisI	GCNGC	3 cut(s)	227, 411, 808
BlsI	GCNGC	3 cut(s)	228, 412, 809
Bme1390I	CCNGG	3 cut(s)	67, 736, 863
Bme18I	GGWCC	2 cut(s)	79, 1013
BmgT120I	GGNCC	3 cut(s)	79, 536, 1013
BmiI	GGNNCC	3 cut(s)	81, 754, 867
BmrFI	CCNGG	3 cut(s)	67, 736, 863
BmsI	GCATC	3 cut(s)	519, 832, 936
Bpu10I	CCTNAGC	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	863
Bsa29I	ATCGAT	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	16
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	65, 224
BsaWI	WCCGGW	1 cut(s)	558
BsaXI	ACNNNNNCTCC	2 cut(s)	907, 937
Bsc4I	CCNNNNNNNGG	1 cut(s)	749
Bse1I	ACTGG	2 cut(s)	494, 756
Bse21I	CCTNAGG	1 cut(s)	870
Bse3DI	GCAATG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	67, 736
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	2 cut(s)	65, 224
BseGI	GGATG	4 cut(s)	178, 654, 731, 896
BseLI	CCNNNNNNNGG	1 cut(s)	749
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	4 cut(s)	101, 119, 666, 861
BseNI	ACTGG	2 cut(s)	494, 756
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	2 cut(s)	422, 819
BseYI	CCCAGC	1 cut(s)	342
Bsh1236I	CGCG	2 cut(s)	226, 600
BshFI	GGCC	2 cut(s)	538, 739
BshNI	GGYRCC	1 cut(s)	865
BshVI	ATCGAT	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	2 cut(s)	559, 862
BslFI	GGGAC	2 cut(s)	157, 897
BslI	CCNNNNNNNGG	1 cut(s)	749
BsmAI	GTCTC	1 cut(s)	656
BsmBI	CGTCTC	1 cut(s)	656
BsmFI	GGGAC	2 cut(s)	157, 897
BsmI	GAATGC	2 cut(s)	344, 632
BsnI	GGCC	2 cut(s)	538, 739
Bsp1286I	GDGCHC	2 cut(s)	834, 868
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	43, 294, 585, 589
BspACI	CCGC	3 cut(s)	224, 226, 598
BspANI	GGCC	2 cut(s)	538, 739
BspCNI	CTCAG	4 cut(s)	100, 118, 667, 862
BspDI	ATCGAT	1 cut(s)	588
BspEI	TCCGGA	1 cut(s)	558
BspFNI	CGCG	2 cut(s)	226, 600
BspLI	GGNNCC	3 cut(s)	81, 754, 867
BspPI	GGATC	2 cut(s)	289, 593
BspT107I	GGYRCC	1 cut(s)	865
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	2 cut(s)	494, 756
BssECI	CCNNGG	2 cut(s)	65, 224
BssMI	GATC	4 cut(s)	43, 294, 585, 589
BssNI	GRCGYC	1 cut(s)	49
BssSI	CACGAG	1 cut(s)	971
Bst2BI	CACGAG	1 cut(s)	971
Bst2UI	CCWGG	2 cut(s)	67, 736
Bst4CI	ACNGT	3 cut(s)	404, 438, 618
BstACI	GRCGYC	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	646
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	611
BstDEI	CTNAG	4 cut(s)	87, 105, 675, 870
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	4 cut(s)	178, 654, 731, 896
BstFNI	CGCG	2 cut(s)	226, 600
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	4 cut(s)	46, 297, 588, 592
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	43, 294, 585, 589
BstMWI	GCNNNNNNNGC	4 cut(s)	439, 606, 646, 829
BstNI	CCWGG	2 cut(s)	67, 736
BstNSI	RCATGY	2 cut(s)	259, 1033
BstSCI	CCNGG	3 cut(s)	65, 734, 861
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	868
BstUI	CGCG	2 cut(s)	226, 600
BstV1I	GCAGC	2 cut(s)	422, 819
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	588
Bsu36I	CCTNAGG	1 cut(s)	870
BsuRI	GGCC	2 cut(s)	538, 739
BsuTUI	ATCGAT	1 cut(s)	588
BtgI	CCRYGG	1 cut(s)	224
BtsCI	GGATG	4 cut(s)	178, 654, 731, 896
Cac8I	GCNNGC	1 cut(s)	611
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	79, 536, 1013
Cfr42I	CCGCGG	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	588
CseI	GACGC	2 cut(s)	38, 638
Csp6I	GTAC	2 cut(s)	167, 713
CviAII	CATG	5 cut(s)	256, 637, 641, 903, 1030
CviQI	GTAC	2 cut(s)	167, 713
DdeI	CTNAG	4 cut(s)	87, 105, 675, 870
DpnI	GATC	4 cut(s)	45, 296, 587, 591
DpnII	GATC	4 cut(s)	43, 294, 585, 589
Eco47I	GGWCC	2 cut(s)	79, 1013
Eco57I	CTGAAG	2 cut(s)	681, 689
Eco81I	CCTNAGG	1 cut(s)	870
EcoRII	CCWGG	2 cut(s)	65, 734
EcoT22I	ATGCAT	1 cut(s)	642
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	5 cut(s)	259, 640, 644, 906, 1033
FaqI	GGGAC	2 cut(s)	157, 897
FatI	CATG	5 cut(s)	255, 636, 640, 902, 1029
FauI	CCCGC	1 cut(s)	231
FauNDI	CATATG	1 cut(s)	911
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	3 cut(s)	227, 411, 808
FokI	GGATG	4 cut(s)	165, 641, 718, 903
Fsp4HI	GCNGC	3 cut(s)	227, 411, 808
FspBI	CTAG	3 cut(s)	183, 780, 989
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	227, 411, 808
GsaI	CCCAGC	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	538, 739
HapII	CCGG	2 cut(s)	559, 862
HgaI	GACGC	2 cut(s)	38, 638
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	5 cut(s)	259, 640, 644, 906, 1033
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	2 cut(s)	204, 849
HindII	GTYRAC	2 cut(s)	204, 849
HindIII	AAGCTT	3 cut(s)	148, 541, 954
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	559, 862
HphI	GGTGA	2 cut(s)	86, 323
Hpy166II	GTNNAC	3 cut(s)	204, 729, 849
Hpy188I	TCNGA	5 cut(s)	22, 269, 585, 700, 966
Hpy188III	TCNNGA	8 cut(s)	111, 173, 385, 394, 559, 827, 948, 1059
Hpy8I	GTNNAC	3 cut(s)	204, 729, 849
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	3 cut(s)	404, 438, 618
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	640, 927
HpyF10VI	GCNNNNNNNGC	4 cut(s)	439, 606, 646, 829
HpyF3I	CTNAG	4 cut(s)	87, 105, 675, 870
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	5 cut(s)	259, 640, 644, 906, 1033
HspAI	GCGC	1 cut(s)	263
Kpn2I	TCCGGA	1 cut(s)	558
KspI	CCGCGG	1 cut(s)	227
Kzo9I	GATC	4 cut(s)	43, 294, 585, 589
Lsp1109I	GCAGC	2 cut(s)	422, 819
LweI	GCATC	3 cut(s)	519, 832, 936
MaeI	CTAG	3 cut(s)	183, 780, 989
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	503, 905
MalI	GATC	4 cut(s)	45, 296, 587, 591
MboI	GATC	4 cut(s)	43, 294, 585, 589
MboII	GAAGA	1 cut(s)	687
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	834, 868
MluCI	AATT	4 cut(s)	274, 306, 568, 835
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	115, 600
MnlI	CCTC	7 cut(s)	39, 96, 102, 156, 566, 865, 996
Mph1103I	ATGCAT	1 cut(s)	642
MroI	TCCGGA	1 cut(s)	558
MseI	TTAA	2 cut(s)	278, 708
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	2 cut(s)	559, 862
MspR9I	CCNGG	3 cut(s)	67, 736, 863
Mva1269I	GAATGC	2 cut(s)	344, 632
MvaI	CCWGG	2 cut(s)	67, 736
MvnI	CGCG	2 cut(s)	226, 600
MwoI	GCNNNNNNNGC	4 cut(s)	439, 606, 646, 829
NciI	CCSGG	1 cut(s)	863
NdeI	CATATG	1 cut(s)	911
NdeII	GATC	4 cut(s)	43, 294, 585, 589
NlaIII	CATG	5 cut(s)	259, 640, 644, 906, 1033
NlaIV	GGNNCC	3 cut(s)	81, 754, 867
NmuCI	GTSAC	1 cut(s)	905
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	2 cut(s)	259, 1033
PciI	ACATGT	2 cut(s)	255, 1029
PctI	GAATGC	2 cut(s)	344, 632
PflMI	CCANNNNNTGG	1 cut(s)	749
PkrI	GCNGC	3 cut(s)	228, 412, 809
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	16
PscI	ACATGT	2 cut(s)	255, 1029
PsiI	TTATAA	1 cut(s)	762
Psp6I	CCWGG	2 cut(s)	65, 734
PspFI	CCCAGC	1 cut(s)	342
PspGI	CCWGG	2 cut(s)	65, 734
PspN4I	GGNNCC	3 cut(s)	81, 754, 867
PspPI	GGNCC	3 cut(s)	79, 536, 1013
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	2 cut(s)	168, 714
RsaNI	GTAC	2 cut(s)	167, 713
RseI	CAYNNNNRTG	1 cut(s)	183
SacII	CCGCGG	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	847
SaqAI	TTAA	2 cut(s)	278, 708
SatI	GCNGC	3 cut(s)	227, 411, 808
Sau3AI	GATC	4 cut(s)	43, 294, 585, 589
Sau96I	GGNCC	3 cut(s)	79, 536, 1013
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	3 cut(s)	67, 736, 863
SduI	GDGCHC	2 cut(s)	834, 868
SfaNI	GCATC	3 cut(s)	519, 832, 936
SfcI	CTRYAG	1 cut(s)	434
Sfr303I	CCGCGG	1 cut(s)	227
SgrBI	CCGCGG	1 cut(s)	227
SinI	GGWCC	2 cut(s)	79, 1013
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	4 cut(s)	274, 306, 568, 835
SsiI	CCGC	3 cut(s)	224, 226, 598
SspMI	CTAG	3 cut(s)	183, 780, 989
StyD4I	CCNGG	3 cut(s)	65, 734, 861
TaaI	ACNGT	3 cut(s)	404, 438, 618
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	588, 848
TasI	AATT	4 cut(s)	274, 306, 568, 835
TauI	GCSGC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	278, 708
Tru9I	TTAA	2 cut(s)	278, 708
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	2 cut(s)	410, 807
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	1 cut(s)	625
TspGWI	ACGGA	1 cut(s)	499
Van91I	CCANNNNNTGG	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	79, 1013
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	2 cut(s)	259, 1033
XcmI	CCANNNNNNNNNTGG	3 cut(s)	73, 305, 909
XmiI	GTMKAC	1 cut(s)	848
XspI	CTAG	3 cut(s)	183, 780, 989
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.