Rmu_sc0012180.1_g000012

Serine threonine-protein kinase AFC2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012180.1
Physical Location & Seq
Reverse (-)
36988 .. 40320
3333 bp
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UTR
Exon/CDS
Intron
Rmu_sc0012180.1_g000012.1.cds

Sequence Viewer

Length: 1293 bp
atggattacgtgacggagtttcctctctctcatattgatcggcgccccagaaagaggcccaggttcgcttgggacggcccccaatcccacccaaaggctcagtcaggaatgtattatgagcaagatgttggaaatggaacaagctatggacatccgagggtacacccagaccatcctagtctttttgtaaaggggttgactcaaaaaggctctcccccatggcgtgaggatgacaaagatggacattacatgtttgctgttggagagaatttaacttctcgctataaaattcacaggaaaattggggaaggaacttttggtcaggttttggaatgctgggacagggaaacaaaggagatggtagctataaaagttgtcagaagtatcaagaaataccgtgaagcagcaatgatagaaattgatgtgctacagttgcttggaaagtatgacagaaatggcagtcgttgtgttcaaatacggaactggtttgactatcgtaaccatatatgtatagtatttgagatgcttggaccaagcttatatgatttcctccggaaaaataattatcgcccatttccggttgatcttgtccgcgagcttggcaggcaactattggaatgtgtagcattcatacatgatatgcgtctcatccatactgacttgaagcctgagaatatactttttgtttcgccagaatatattaaagtaccggactacaggttcacatcccggtcaccaaaagatggaacctgttatagaaggttgccaaagtctagtgctatcaaagttattgattttggtagcacagcgtatgagcatcaagagcacaactatattgtatcgacaaggcactaccgcgcacctgaggtcattctaggacttggatggagttatccatgtgacatttggagtattggctgcatcttggtagagttgtgttcgggagaagccttgtttcagacacatgagaacttagaacacctggctatgatggaaagggtactaggtccattgccacagcacatgttaaaaagagcagaccgccatgctgagaagtatgtcaggaggggtaggttggactggcctgaaggtgcaaattctcgggaaagtattaaatctgttttaaagctacatcgtctccagaatatagtgatgcaacatgtagatcattcagctggtgatctgatcgacctcctgcaaggtctccttagatttgagccctctaataggctaacagctcctgaagccctaaggcatcccttctttaccagggatcattacagaaggttttag

Protein Analysis

430

Amino Acids

50.38

Weight (kDa)

9.01

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 42
AccB7I CCANNNNNTGG 1 cut(s) 743
AccII CGCG 2 cut(s) 594, 858
AccIII TCCGGA 1 cut(s) 552
AciI CCGC 3 cut(s) 592, 856, 1042
AclWI GGATC 1 cut(s) 1281
AcsI RAATTY 3 cut(s) 268, 288, 1096
AcuI CTGAAG 2 cut(s) 1107, 1263
AcyI GRCGYC 1 cut(s) 43
AfaI GTAC 3 cut(s) 162, 708, 1002
AfiI CCNNNNNNNGG 5 cut(s) 54, 94, 577, 743, 1227
AflIII ACRYGT 3 cut(s) 249, 1023, 1159
AgsI TTSAA 2 cut(s) 473, 664
AjnI CCWGG 3 cut(s) 59, 981, 1268
AjuI GAANNNNNNNTTGG 2 cut(s) 300, 332
AloI GAACNNNNNNTCC 2 cut(s) 704, 736
AluBI AGCT 7 cut(s) 144, 365, 537, 598, 1129, 1175, 1238
AluI AGCT 7 cut(s) 144, 365, 537, 598, 1129, 1175, 1238
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 3 cut(s) 650, 1142, 1208
AlwI GGATC 1 cut(s) 1281
AlwNI CAGNNNCTG 1 cut(s) 1241
Ama87I CYCGRG 1 cut(s) 1101
Aor13HI TCCGGA 1 cut(s) 552
AoxI GGCC 3 cut(s) 56, 76, 1082
ApeKI GCWGC 2 cut(s) 404, 918
ApoI RAATTY 3 cut(s) 268, 288, 1096
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspLEI GCGC 2 cut(s) 45, 860
AspS9I GGNCC 4 cut(s) 57, 77, 530, 1007
AsuC2I CCSGG 1 cut(s) 730
AsuHPI GGTGA 2 cut(s) 726, 1190
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 2 cut(s) 530, 1007
AxyI CCTNAGG 2 cut(s) 864, 1250
BanI GGYRCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 1221
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 2 cut(s) 416, 905
BccI CCATC 6 cut(s) 180, 233, 352, 737, 879, 985
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 3 cut(s) 61, 983, 1270
BcnI CCSGG 1 cut(s) 730
BcoDI GTCTC 3 cut(s) 650, 1142, 1208
BfaI CTAG 4 cut(s) 177, 774, 875, 1004
BfmI CTRYAG 2 cut(s) 428, 715
BfoI RGCGCY 1 cut(s) 46
BisI GCNGC 2 cut(s) 405, 919
BlsI GCNGC 2 cut(s) 406, 920
Bme1390I CCNGG 4 cut(s) 61, 730, 983, 1270
Bme18I GGWCC 2 cut(s) 530, 1007
BmeT110I CYCGRG 1 cut(s) 1101
BmgT120I GGNCC 4 cut(s) 57, 77, 530, 1007
BmiI GGNNCC 3 cut(s) 44, 79, 748
BmrFI CCNGG 4 cut(s) 61, 730, 983, 1270
BmsI GCATC 5 cut(s) 513, 826, 930, 1143, 1264
BpmI CTGGAG 1 cut(s) 1124
BpuMI CCSGG 1 cut(s) 730
BsaAI YACGTR 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 1208
BsaJI CCNNGG 4 cut(s) 59, 155, 218, 1269
BsaWI WCCGGW 3 cut(s) 552, 577, 709
BsaXI ACNNNNNCTCC 2 cut(s) 1122, 1152
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 94, 577, 743, 1227
Bse1I ACTGG 2 cut(s) 488, 1085
Bse21I CCTNAGG 2 cut(s) 864, 1250
Bse3DI GCAATG 2 cut(s) 414, 1010
BseAI TCCGGA 1 cut(s) 552
BseBI CCWGG 3 cut(s) 61, 983, 1270
BseDI CCNNGG 4 cut(s) 59, 155, 218, 1269
BseGI GGATG 7 cut(s) 151, 172, 235, 648, 725, 890, 1255
BseLI CCNNNNNNNGG 5 cut(s) 54, 94, 577, 743, 1227
BseMI GCAATG 2 cut(s) 414, 1010
BseMII CTCAG 4 cut(s) 113, 660, 855, 1041
BseNI ACTGG 2 cut(s) 488, 1085
BseXI GCAGC 2 cut(s) 416, 905
BseYI CCCAGC 1 cut(s) 336
Bsh1236I CGCG 2 cut(s) 594, 858
BshFI GGCC 3 cut(s) 58, 78, 1084
BshNI GGYRCC 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 828
BsiHKCI CYCGRG 1 cut(s) 1101
BsiSI CCGG 4 cut(s) 553, 578, 710, 730
BslFI GGGAC 2 cut(s) 86, 353
BslI CCNNNNNNNGG 5 cut(s) 54, 94, 577, 743, 1227
BsmAI GTCTC 3 cut(s) 650, 1142, 1208
BsmBI CGTCTC 2 cut(s) 650, 1142
BsmFI GGGAC 2 cut(s) 86, 353
BsmI GAATGC 2 cut(s) 338, 626
BsnI GGCC 3 cut(s) 58, 78, 1084
Bso31I GGTCTC 1 cut(s) 1208
BsoBI CYCGRG 1 cut(s) 1101
Bsp1286I GDGCHC 2 cut(s) 828, 1221
Bsp13I TCCGGA 1 cut(s) 552
Bsp143I GATC 6 cut(s) 37, 583, 1165, 1180, 1185, 1273
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 3 cut(s) 592, 856, 1042
BspANI GGCC 3 cut(s) 58, 78, 1084
BspCNI CTCAG 4 cut(s) 112, 661, 856, 1042
BspEI TCCGGA 1 cut(s) 552
BspFNI CGCG 2 cut(s) 594, 858
BspLI GGNNCC 3 cut(s) 44, 79, 748
BspPI GGATC 1 cut(s) 1281
BspT107I GGYRCC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 1208
BsrDI GCAATG 2 cut(s) 414, 1010
BsrI ACTGG 2 cut(s) 488, 1085
BssECI CCNNGG 4 cut(s) 59, 155, 218, 1269
BssMI GATC 6 cut(s) 37, 583, 1165, 1180, 1185, 1273
BssNI GRCGYC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 3 cut(s) 61, 983, 1270
Bst4CI ACNGT 2 cut(s) 398, 432
BstACI GRCGYC 1 cut(s) 43
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 596, 605
BstDEI CTNAG 7 cut(s) 99, 669, 864, 973, 1050, 1208, 1250
BstDSI CCRYGG 1 cut(s) 218
BstEII GGTNACC 1 cut(s) 732
BstENI CCTNNNNNAGG 1 cut(s) 1225
BstF5I GGATG 7 cut(s) 151, 172, 235, 648, 725, 890, 1255
BstFNI CGCG 2 cut(s) 594, 858
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 2 cut(s) 45, 860
BstKTI GATC 6 cut(s) 40, 586, 1168, 1183, 1188, 1276
BstMAI GTCTC 3 cut(s) 650, 1142, 1208
BstMBI GATC 6 cut(s) 37, 583, 1165, 1180, 1185, 1273
BstMWI GCNNNNNNNGC 5 cut(s) 433, 600, 604, 823, 1244
BstNI CCWGG 3 cut(s) 61, 983, 1270
BstNSI RCATGY 3 cut(s) 253, 1027, 1163
BstPI GGTNACC 1 cut(s) 732
BstSCI CCNGG 4 cut(s) 59, 728, 981, 1268
BstSFI CTRYAG 2 cut(s) 428, 715
BstUI CGCG 2 cut(s) 594, 858
BstV1I GCAGC 2 cut(s) 416, 905
Bsu36I CCTNAGG 2 cut(s) 864, 1250
BsuRI GGCC 3 cut(s) 58, 78, 1084
BtgI CCRYGG 1 cut(s) 218
BtsCI GGATG 7 cut(s) 151, 172, 235, 648, 725, 890, 1255
Cac8I GCNNGC 2 cut(s) 596, 605
CaiI CAGNNNCTG 1 cut(s) 1241
CfoI GCGC 2 cut(s) 45, 860
Cfr13I GGNCC 4 cut(s) 57, 77, 530, 1007
CseI GACGC 1 cut(s) 632
Csp6I GTAC 3 cut(s) 161, 707, 1001
CviAII CATG 8 cut(s) 219, 250, 635, 897, 965, 1024, 1046, 1160
CviQI GTAC 3 cut(s) 161, 707, 1001
DdeI CTNAG 7 cut(s) 99, 669, 864, 973, 1050, 1208, 1250
DinI GGCGCC 1 cut(s) 44
DpnI GATC 6 cut(s) 39, 585, 1167, 1182, 1187, 1275
DpnII GATC 6 cut(s) 37, 583, 1165, 1180, 1185, 1273
DraI TTTAAA 1 cut(s) 1125
Eco130I CCWWGG 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 1221
Eco31I GGTCTC 1 cut(s) 1208
Eco47I GGWCC 2 cut(s) 530, 1007
Eco57I CTGAAG 2 cut(s) 1107, 1263
Eco81I CCTNAGG 2 cut(s) 864, 1250
Eco88I CYCGRG 1 cut(s) 1101
Eco91I GGTNACC 1 cut(s) 732
EcoNI CCTNNNNNAGG 1 cut(s) 1225
EcoO65I GGTNACC 1 cut(s) 732
EcoRII CCWGG 3 cut(s) 59, 981, 1268
EcoT14I CCWWGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 1221
EgeI GGCGCC 1 cut(s) 44
EheI GGCGCC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 218
Esp3I CGTCTC 2 cut(s) 650, 1142
FaeI CATG 8 cut(s) 222, 253, 638, 900, 968, 1027, 1049, 1163
FalI AAGNNNNNCTT 2 cut(s) 1191, 1223
FaqI GGGAC 2 cut(s) 86, 353
FatI CATG 8 cut(s) 218, 249, 634, 896, 964, 1023, 1045, 1159
Fnu4HI GCNGC 2 cut(s) 405, 919
FokI GGATG 7 cut(s) 138, 159, 242, 635, 712, 897, 1242
FriOI GRGCYC 1 cut(s) 1221
Fsp4HI GCNGC 2 cut(s) 405, 919
FspBI CTAG 4 cut(s) 177, 774, 875, 1004
GlaI GCGC 2 cut(s) 44, 859
GluI GCNGC 2 cut(s) 405, 919
GsaI CCCAGC 1 cut(s) 340
GsuI CTGGAG 1 cut(s) 1124
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 3 cut(s) 58, 78, 1084
HapII CCGG 4 cut(s) 553, 578, 710, 730
HgaI GACGC 1 cut(s) 632
HhaI GCGC 2 cut(s) 45, 860
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 8 cut(s) 222, 253, 638, 900, 968, 1027, 1049, 1163
Hin6I GCGC 2 cut(s) 43, 858
HinP1I GCGC 2 cut(s) 43, 858
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 535
HinfI GANTC 1 cut(s) 199
HpaII CCGG 4 cut(s) 553, 578, 710, 730
HphI GGTGA 2 cut(s) 726, 1190
Hpy166II GTNNAC 3 cut(s) 163, 198, 723
Hpy188I TCNGA 4 cut(s) 156, 380, 960, 1185
Hpy188III TCNNGA 9 cut(s) 105, 388, 553, 821, 942, 1063, 1103, 1141, 1241
Hpy8I GTNNAC 3 cut(s) 163, 198, 723
HpyAV CCTTC 5 cut(s) 302, 753, 1082, 1270, 1278
HpyCH4III ACNGT 2 cut(s) 398, 432
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 4 cut(s) 921, 1094, 1156, 1198
HpyF10VI GCNNNNNNNGC 5 cut(s) 433, 600, 604, 823, 1244
HpyF3I CTNAG 7 cut(s) 99, 669, 864, 973, 1050, 1208, 1250
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 8 cut(s) 222, 253, 638, 900, 968, 1027, 1049, 1163
HspAI GCGC 2 cut(s) 43, 858
KasI GGCGCC 1 cut(s) 42
Kpn2I TCCGGA 1 cut(s) 552
Kzo9I GATC 6 cut(s) 37, 583, 1165, 1180, 1185, 1273
LmnI GCTCC 1 cut(s) 1243
Lsp1109I GCAGC 2 cut(s) 416, 905
LweI GCATC 5 cut(s) 513, 826, 930, 1143, 1264
MaeI CTAG 4 cut(s) 177, 774, 875, 1004
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 4 cut(s) 10, 497, 732, 899
MalI GATC 6 cut(s) 39, 585, 1167, 1182, 1187, 1275
MboI GATC 6 cut(s) 37, 583, 1165, 1180, 1185, 1273
MhlI GDGCHC 2 cut(s) 828, 1221
MluCI AATT 6 cut(s) 268, 288, 300, 417, 562, 1096
Mly113I GGCGCC 1 cut(s) 43
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 3 cut(s) 109, 241, 1056
MnlI CCTC 9 cut(s) 33, 48, 150, 220, 560, 859, 1059, 1202, 1231
MroI TCCGGA 1 cut(s) 552
MseI TTAA 5 cut(s) 272, 702, 1028, 1113, 1124
MspA1I CMGCKG 1 cut(s) 1175
MspI CCGG 4 cut(s) 553, 578, 710, 730
MspR9I CCNGG 4 cut(s) 61, 730, 983, 1270
Mva1269I GAATGC 2 cut(s) 338, 626
MvaI CCWGG 3 cut(s) 61, 983, 1270
MvnI CGCG 2 cut(s) 594, 858
MwoI GCNNNNNNNGC 5 cut(s) 433, 600, 604, 823, 1244
NarI GGCGCC 1 cut(s) 43
NciI CCSGG 1 cut(s) 730
NcoI CCATGG 1 cut(s) 218
NdeII GATC 6 cut(s) 37, 583, 1165, 1180, 1185, 1273
NlaIII CATG 8 cut(s) 222, 253, 638, 900, 968, 1027, 1049, 1163
NlaIV GGNNCC 3 cut(s) 44, 79, 748
NmuCI GTSAC 3 cut(s) 10, 732, 899
NspI RCATGY 3 cut(s) 253, 1027, 1163
PciI ACATGT 3 cut(s) 249, 1023, 1159
PctI GAATGC 2 cut(s) 338, 626
PflMI CCANNNNNTGG 1 cut(s) 743
PkrI GCNGC 2 cut(s) 406, 920
PleI GAGTC 1 cut(s) 193
PluTI GGCGCC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 10
PscI ACATGT 3 cut(s) 249, 1023, 1159
Psp6I CCWGG 3 cut(s) 59, 981, 1268
PspEI GGTNACC 1 cut(s) 732
PspFI CCCAGC 1 cut(s) 336
PspGI CCWGG 3 cut(s) 59, 981, 1268
PspN4I GGNNCC 3 cut(s) 44, 79, 748
PspPI GGNCC 4 cut(s) 57, 77, 530, 1007
PstNI CAGNNNCTG 1 cut(s) 1241
PvuII CAGCTG 1 cut(s) 1175
RsaI GTAC 3 cut(s) 162, 708, 1002
RsaNI GTAC 3 cut(s) 161, 707, 1001
SaqAI TTAA 5 cut(s) 272, 702, 1028, 1113, 1124
SatI GCNGC 2 cut(s) 405, 919
Sau3AI GATC 6 cut(s) 37, 583, 1165, 1180, 1185, 1273
Sau96I GGNCC 4 cut(s) 57, 77, 530, 1007
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 4 cut(s) 61, 730, 983, 1270
SduI GDGCHC 2 cut(s) 828, 1221
SfaNI GCATC 5 cut(s) 513, 826, 930, 1143, 1264
SfcI CTRYAG 2 cut(s) 428, 715
SfoI GGCGCC 1 cut(s) 44
SinI GGWCC 2 cut(s) 530, 1007
Sse9I AATT 6 cut(s) 268, 288, 300, 417, 562, 1096
SsiI CCGC 3 cut(s) 592, 856, 1042
SspDI GGCGCC 1 cut(s) 42
SspMI CTAG 4 cut(s) 177, 774, 875, 1004
StyD4I CCNGG 4 cut(s) 59, 728, 981, 1268
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 2 cut(s) 398, 432
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 842, 1188
TasI AATT 6 cut(s) 268, 288, 300, 417, 562, 1096
Tru1I TTAA 5 cut(s) 272, 702, 1028, 1113, 1124
Tru9I TTAA 5 cut(s) 272, 702, 1028, 1113, 1124
TseFI GTSAC 3 cut(s) 10, 732, 899
TseI GCWGC 2 cut(s) 404, 918
Tsp45I GTSAC 3 cut(s) 10, 732, 899
TspDTI ATGAA 1 cut(s) 619
TspGWI ACGGA 2 cut(s) 29, 493
Van91I CCANNNNNTGG 1 cut(s) 743
VpaK11BI GGWCC 2 cut(s) 530, 1007
XagI CCTNNNNNAGG 1 cut(s) 1225
XapI RAATTY 3 cut(s) 268, 288, 1096
XceI RCATGY 3 cut(s) 253, 1027, 1163
XcmI CCANNNNNNNNNTGG 1 cut(s) 903
XspI CTAG 4 cut(s) 177, 774, 875, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.