Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002302

Physical Location & Seq

Genomic Coordinates Forward (+)

11926759 .. 11930502

Gene Structure 3744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGACGCAGAGGATAATTGAATTTCCTCACCAGAATATGGATAAGCGGCCCAGGAAGAGGCCTCGATTAACATGGGATATGCCCCCTCCTCTTCCTCCTCCCGAGCTGCTGCCAGCAATATACTGCGGGCCGGAGTTTGGAAGTGGGCCAATTCCCAATTACACATATACGTCTATGTTTTATGGGGGATTGCCTCGGAATGCCTCCCCTCCGTGGAGGCCTGATGATAAAGATGGTCATTATGTGTTTGGGATTGGAGATAATCTAACCCCTCGATATAGGATTCTCAACAAAATGGGAGAGGGGACTTTTGGGCAAGTGTTGGAGTGTTTTGACAATGAAAAGAAAGAATTTGTGGCAATTAAAATTATCCGCTCCATACATAAGTATCGTGAAGCTGCGATGATTGAAATTGATGTCCTACAAAGGCTTGCAAGGCATGATATTGGTGGCACTCGTTGTGTGCAAATTCGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCTAGCTTATACGATTTTCTTCGCAAAAACAGCTACCGTTCATTTCCCATTGATCTTGTTCGGGAGCTTGCCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTACGCCTTATTCATACTGATTTGAAGCCGGAAAATATTCTGCTTGTTTCCTCCGACTACATCAAAGTGCCAGACTATAGGTTTCTGGCACGGTCAACTAAAGAGGGTTCTTATTTCAAGAATCTGCCCAAGTCAAGTGCCATAAAGCTCATTGATTTTGGAAGCACAACATTTGAACATCAGGATCATAGCTATGTGGTGTCAACACGCCATTATCGTGCACCGGAGGTTATCTTAGGTCTTGGGTGGAACTATCCTTGTGACATATGGAGTGTGGGCTGCATACTTGTTGAACTATGCTCTGTAAGTACCCGTGGGTTGATATGGCCCATCATTTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

326

Amino Acids

37.93

Weight (kDa)

8.72

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	94 - 313	1.7e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	96 - 315	6.4e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53570 AT3G53570 AT3G53570 AT3G53570 AT3G53570
fragaria_vesca	FvH4_4g25400 FvH4_4g25400 FvH4_4g25400 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570
malus_domestica	MD12G1136400.v1.1 MD16G1103500.v1.1
prunus_persica	Prupe.1G242500_v2.0.a1 Prupe.1G242500_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1
pyrus_communis	pycom13g09030
rosa_chinensis	RchiOBHm_Chr3g0467621 RchiOBHm_Chr4g0432711
rosa_laevigata	RLG00000006818 RLG00000024484
rosa_multiflora	Rmu_co8522421.1_g000003 Rmu_sc0012180.1_g000012
rosa_roxburghii	Rroxscaffold_5G00374170 Rroxscaffold_6G00413540
rosa_rugosa	Rorug03G0088600 Rorug04G0261900 Rorug04G0262000 Rorug04G0262000
rosa_samantha	Rh3AG136900 Rh3BG158700 Rh3CG158300 Rh3DG159200 Rh4AG316300 Rh4BG324300 Rh4CG339300 Rh4DG319600
rosa_wichuraiana	Rw3G012970 Rw4G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	378
AciI	CCGC	3 cut(s)	49, 129, 376
AclWI	GGATC	1 cut(s)	828
AcsI	RAATTY	3 cut(s)	23, 353, 471
AfaI	GTAC	1 cut(s)	946
AfiI	CCNNNNNNNGG	4 cut(s)	40, 60, 140, 216
AgsI	TTSAA	6 cut(s)	23, 413, 661, 754, 812, 929
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	8 cut(s)	109, 401, 523, 534, 561, 595, 784, 828
AluI	AGCT	8 cut(s)	109, 401, 523, 534, 561, 595, 784, 828
Alw21I	GWGCWC	1 cut(s)	859
Alw44I	GTGCAC	1 cut(s)	855
AlwI	GGATC	1 cut(s)	828
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	6 cut(s)	50, 62, 131, 149, 221, 962
ApaLI	GTGCAC	1 cut(s)	855
ApeKI	GCWGC	4 cut(s)	109, 112, 401, 915
ApoI	RAATTY	3 cut(s)	23, 353, 471
Asp700I	GAANNNNTTC	1 cut(s)	672
AspS9I	GGNCC	5 cut(s)	51, 131, 149, 527, 963
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	859
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
Bbv12I	GWGCWC	1 cut(s)	859
BbvI	GCAGC	4 cut(s)	96, 99, 388, 902
BccI	CCATC	2 cut(s)	230, 974
BciT130I	CCWGG	1 cut(s)	55
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	2 cut(s)	618, 712
BisI	GCNGC	5 cut(s)	50, 110, 113, 402, 916
BlsI	GCNGC	5 cut(s)	51, 111, 114, 403, 917
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	527
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	5 cut(s)	51, 131, 149, 527, 963
BmrFI	CCNGG	1 cut(s)	55
BsaJI	CCNNGG	4 cut(s)	53, 197, 215, 949
BsaWI	WCCGGW	1 cut(s)	859
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 60, 140, 216
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	4 cut(s)	53, 197, 215, 949
BseLI	CCNNNNNNNGG	4 cut(s)	40, 60, 140, 216
BseRI	GAGGAG	2 cut(s)	81, 90
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	4 cut(s)	96, 99, 388, 902
BshFI	GGCC	6 cut(s)	52, 64, 133, 151, 223, 964
BsiHKAI	GWGCWC	1 cut(s)	859
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	134, 665, 860
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	40, 60, 140, 216
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	6 cut(s)	52, 64, 133, 151, 223, 964
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	859
Bsp143I	GATC	2 cut(s)	580, 820
BspACI	CCGC	3 cut(s)	49, 129, 376
BspANI	GGCC	6 cut(s)	52, 64, 133, 151, 223, 964
BspPI	GGATC	1 cut(s)	828
BsrBI	CCGCTC	1 cut(s)	378
BssECI	CCNNGG	4 cut(s)	53, 197, 215, 949
BssMI	GATC	2 cut(s)	580, 820
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	566, 729
Bst6I	CTCTTC	2 cut(s)	53, 99
BstC8I	GCNNGC	4 cut(s)	117, 131, 435, 597
BstDEI	CTNAG	1 cut(s)	871
BstDSI	CCRYGG	2 cut(s)	215, 949
BstKTI	GATC	2 cut(s)	583, 823
BstMBI	GATC	2 cut(s)	580, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 558
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	618, 712
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	4 cut(s)	96, 99, 388, 902
BsuRI	GGCC	6 cut(s)	52, 64, 133, 151, 223, 964
BtgI	CCRYGG	2 cut(s)	215, 949
BtgZI	GCGATG	1 cut(s)	419
Cac8I	GCNNGC	4 cut(s)	117, 131, 435, 597
Cfr13I	GGNCC	5 cut(s)	51, 131, 149, 527, 963
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	945
CviAII	CATG	3 cut(s)	75, 443, 632
CviQI	GTAC	1 cut(s)	945
DdeI	CTNAG	1 cut(s)	871
DpnI	GATC	2 cut(s)	582, 822
DpnII	GATC	2 cut(s)	580, 820
Eam1104I	CTCTTC	2 cut(s)	53, 99
EarI	CTCTTC	2 cut(s)	53, 99
Eco147I	AGGCCT	2 cut(s)	64, 223
Eco47I	GGWCC	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	633
FaeI	CATG	3 cut(s)	78, 446, 635
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	74, 442, 631
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	902
Fnu4HI	GCNGC	5 cut(s)	50, 110, 113, 402, 916
Fsp4HI	GCNGC	5 cut(s)	50, 110, 113, 402, 916
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	5 cut(s)	50, 110, 113, 402, 916
HaeIII	GGCC	6 cut(s)	52, 64, 133, 151, 223, 964
HapII	CCGG	3 cut(s)	134, 665, 860
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	3 cut(s)	78, 446, 635
HincII	GTYRAC	2 cut(s)	732, 840
HindII	GTYRAC	2 cut(s)	732, 840
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	3 cut(s)	286, 614, 757
HpaII	CCGG	3 cut(s)	134, 665, 860
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	732, 840, 857
Hpy188I	TCNGA	3 cut(s)	201, 477, 691
Hpy188III	TCNNGA	5 cut(s)	104, 395, 590, 754, 818
Hpy8I	GTNNAC	3 cut(s)	732, 840, 857
HpyCH4III	ACNGT	2 cut(s)	566, 729
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	5 cut(s)	437, 469, 631, 857, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 558
HpyF3I	CTNAG	1 cut(s)	871
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	78, 446, 635
Kzo9I	GATC	2 cut(s)	580, 820
LmnI	GCTCC	2 cut(s)	383, 592
Lsp1109I	GCAGC	4 cut(s)	96, 99, 388, 902
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	896
MalI	GATC	2 cut(s)	582, 822
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	2 cut(s)	580, 820
MboII	GAAGA	3 cut(s)	70, 86, 539
MhlI	GDGCHC	1 cut(s)	859
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	2 cut(s)	306, 714
Mph1103I	ATGCAT	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	2 cut(s)	71, 366
MslI	CAYNNNNRTG	3 cut(s)	701, 828, 852
MspI	CCGG	3 cut(s)	134, 665, 860
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	439, 558
NdeI	CATATG	1 cut(s)	902
NdeII	GATC	2 cut(s)	580, 820
NlaIII	CATG	3 cut(s)	78, 446, 635
NmuCI	GTSAC	1 cut(s)	896
NsiI	ATGCAT	1 cut(s)	633
PceI	AGGCCT	2 cut(s)	64, 223
PcsI	WCGNNNNNNNCGW	1 cut(s)	850
PctI	GAATGC	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	286, 757
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	5 cut(s)	51, 111, 114, 403, 917
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	5 cut(s)	51, 131, 149, 527, 963
RsaI	GTAC	1 cut(s)	946
RsaNI	GTAC	1 cut(s)	945
RseI	CAYNNNNRTG	3 cut(s)	701, 828, 852
SaqAI	TTAA	2 cut(s)	71, 366
SatI	GCNGC	5 cut(s)	50, 110, 113, 402, 916
Sau3AI	GATC	2 cut(s)	580, 820
Sau96I	GGNCC	5 cut(s)	51, 131, 149, 527, 963
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	859
SfcI	CTRYAG	2 cut(s)	618, 712
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	3 cut(s)	701, 828, 852
SseBI	AGGCCT	2 cut(s)	64, 223
SsiI	CCGC	3 cut(s)	49, 129, 376
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	1 cut(s)	531
StuI	AGGCCT	2 cut(s)	64, 223
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	566, 729
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	67, 277
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	286, 757
Tru1I	TTAA	2 cut(s)	71, 366
Tru9I	TTAA	2 cut(s)	71, 366
TseFI	GTSAC	1 cut(s)	896
TseI	GCWGC	4 cut(s)	109, 112, 401, 915
Tsp45I	GTSAC	1 cut(s)	896
TspDTI	ATGAA	3 cut(s)	357, 558, 638
TspGWI	ACGGA	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	855
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	3 cut(s)	23, 353, 471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	1 cut(s)	531
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.