Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002302

Physical Location & Seq

Genomic Coordinates Reverse (-)

24448737 .. 24453324

Gene Structure 4588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G248800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGAGACACAGAGGATAATGGAGTTTCCTCACAAGAATATGGATAAGCGGCCCAGAAAGAGGCCTCGATTAGCATGGGACATGCCCCCTCCTCTTCCTCCTCCTGAGCTGTTCCCAGCAATTTACTGCGGGCAGGATTTTGGGAATGGGCCAATCCCCAATTACACCTATACGTCTATGTTTTATGGGGGGTTGCCACGCAATGCTTCCCCTCCGTGGAGACCTGATGATAAAGATGGTCATTACGTGTTCGGCATCGGAGAAAATTTAACCCCTCGATACAGAATTCTCAGCAAAATGGGAGAGGGAACTTTTGGGCAAGTGTTGGAATGTATTGACAATGAAAAGAAAGAAGTTGTGGCAATCAAAATTGTCCGCTCCATACATAAGTATCGTGAAGCTGCGATGATTGAAATTGATGTCCTACAAAGGCTTGGAAGGCATGATATTGGTGGCACTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCTAGCTTATACGATTTTCTTCGCAAAAACAGCTACCGTTCATTTCCCATTGATCTTGTTCGGGAGCTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGACTTACGCCTTATACATACTGATCTGAAGCCAGAAAATATTCTGCTTGTTTCATCTGACTACATCAAAGTGCCAGACTATAAGTTTCTATCACGGTCGACTAAAGAGGGTTCCTATTTCAAGAATCTGCCCAAGTCAAGTGCCATTAAGCTCATTGATTTTGGGAGTACAACATTTGAACATCAGGATCACAGCTATGTGGTGTCAACACGCCATTATCGTGCACCGGAGGTTATTTTAGGTCTTGGATGGAACTATCCTTGTGATATCTGGAGTGTGGGTTGCATACTTGTTGAACTTTGCTCTGGTGAGGCCCTATTTCAGACACATGAGAACTTGGAGCATCTTGCCATGATGGAGAGGGTTTTGGGGCCACTACCACAGCATATGGTGCTCAGAGCTGATCGTCGTGCTGACAAATATTTTAGAAGGGGAGCACGACTGGATTGGCCTGATGGAGCAACTTCTAGAGAAAGCATGAGGGCAGTTTGCAAATTGCCCCGGTTACCGAACCTAATAATGCAGCATGTGGACCATTCTGCTGGAGATTTGATTGAACTCTTACAAGGGCTCCTAAGATACGAGCCAGCGGAGCGTCTCAAAGCAAGGGAAGCACTAAGACATCCCTTTTTCACTAGAGATATGAGAAGGGGTGGCTACCCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

434

Amino Acids

50.3

Weight (kDa)

9.03

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53570 AT3G53570 AT3G53570 AT3G53570 AT3G53570
fragaria_vesca	FvH4_4g25400 FvH4_4g25400 FvH4_4g25400 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570
malus_domestica	MD12G1136400.v1.1 MD16G1103500.v1.1
prunus_persica	Prupe.1G242500_v2.0.a1 Prupe.1G242500_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1
pyrus_communis	pycom13g09030
rosa_chinensis	RchiOBHm_Chr3g0467621 RchiOBHm_Chr4g0432711
rosa_laevigata	RLG00000006818 RLG00000024484
rosa_multiflora	Rmu_co8522421.1_g000003 Rmu_sc0012180.1_g000012
rosa_roxburghii	Rroxscaffold_5G00374170 Rroxscaffold_6G00413540
rosa_rugosa	Rorug03G0088600 Rorug04G0261900 Rorug04G0262000 Rorug04G0262000
rosa_samantha	Rh3AG136900 Rh3BG158700 Rh3CG158300 Rh3DG159200 Rh4AG316300 Rh4BG324300 Rh4CG339300 Rh4DG319600
rosa_wichuraiana	Rw3G012970 Rw4G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	378
AccI	GTMKAC	1 cut(s)	731
AciI	CCGC	4 cut(s)	49, 129, 376, 1223
AclWI	GGATC	1 cut(s)	828
AcsI	RAATTY	2 cut(s)	265, 285
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	1 cut(s)	802
AfiI	CCNNNNNNNGG	2 cut(s)	60, 216
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	5 cut(s)	413, 754, 812, 929, 1190
AluBI	AGCT	9 cut(s)	109, 401, 523, 534, 561, 595, 784, 828, 1034
AluI	AGCT	9 cut(s)	109, 401, 523, 534, 561, 595, 784, 828, 1034
Alw21I	GWGCWC	3 cut(s)	859, 1029, 1072
Alw26I	GTCTC	2 cut(s)	214, 1235
Alw44I	GTGCAC	1 cut(s)	855
AlwI	GGATC	1 cut(s)	828
AoxI	GGCC	6 cut(s)	50, 62, 149, 945, 1004, 1082
ApaLI	GTGCAC	1 cut(s)	855
ApeKI	GCWGC	2 cut(s)	401, 1156
ApoI	RAATTY	2 cut(s)	265, 285
Asp700I	GAANNNNTTC	1 cut(s)	672
AspS9I	GGNCC	6 cut(s)	51, 149, 527, 946, 1004, 1165
AsuC2I	CCSGG	1 cut(s)	1135
AsuHPI	GGTGA	1 cut(s)	953
AvaII	GGWCC	2 cut(s)	527, 1165
BaeGI	GKGCMC	1 cut(s)	859
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BanII	GRGCYC	1 cut(s)	1206
Bbv12I	GWGCWC	3 cut(s)	859, 1029, 1072
BbvI	GCAGC	2 cut(s)	388, 1168
BccI	CCATC	4 cut(s)	230, 876, 982, 1082
BcnI	CCSGG	1 cut(s)	1135
BcoDI	GTCTC	2 cut(s)	214, 1235
BfaI	CTAG	3 cut(s)	531, 1101, 1269
BfmI	CTRYAG	1 cut(s)	618
BisI	GCNGC	3 cut(s)	50, 402, 1157
BlsI	GCNGC	3 cut(s)	51, 403, 1158
Bme1390I	CCNGG	1 cut(s)	1135
Bme18I	GGWCC	2 cut(s)	527, 1165
BmgT120I	GGNCC	6 cut(s)	51, 149, 527, 946, 1004, 1165
BmiI	GGNNCC	3 cut(s)	745, 1005, 1205
BmrFI	CCNGG	1 cut(s)	1135
BmsI	GCATC	2 cut(s)	264, 985
BpmI	CTGGAG	2 cut(s)	925, 1197
Bpu10I	CCTNAGC	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	1135
BsaAI	YACGTR	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	215, 1133
BsaWI	WCCGGW	1 cut(s)	859
BsaXI	ACNNNNNCTCC	4 cut(s)	898, 928, 1188, 1218
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 216
Bse1I	ACTGG	1 cut(s)	1080
Bse3DI	GCAATG	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	215, 1133
BseGI	GGATG	2 cut(s)	887, 1255
BseLI	CCNNNNNNNGG	2 cut(s)	60, 216
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	3 cut(s)	96, 304, 1042
BseNI	ACTGG	1 cut(s)	1080
BseRI	GAGGAG	2 cut(s)	81, 90
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	2 cut(s)	388, 1168
BseYI	CCCAGC	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	731
BshFI	GGCC	6 cut(s)	52, 64, 151, 947, 1006, 1084
BsiEI	CGRYCG	1 cut(s)	731
BsiHKAI	GWGCWC	3 cut(s)	859, 1029, 1072
BsiSI	CCGG	2 cut(s)	860, 1135
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	60, 216
BsmAI	GTCTC	2 cut(s)	214, 1235
BsmBI	CGTCTC	1 cut(s)	1235
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	6 cut(s)	52, 64, 151, 947, 1006, 1084
Bso31I	GGTCTC	1 cut(s)	214
Bsp1286I	GDGCHC	4 cut(s)	859, 1029, 1072, 1206
Bsp143I	GATC	4 cut(s)	580, 655, 820, 1036
BspACI	CCGC	4 cut(s)	49, 129, 376, 1223
BspANI	GGCC	6 cut(s)	52, 64, 151, 947, 1006, 1084
BspCNI	CTCAG	3 cut(s)	97, 303, 1041
BspLI	GGNNCC	3 cut(s)	745, 1005, 1205
BspPI	GGATC	1 cut(s)	828
BspTNI	GGTCTC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	1080
BssECI	CCNNGG	2 cut(s)	215, 1133
BssMI	GATC	4 cut(s)	580, 655, 820, 1036
Bst4CI	ACNGT	2 cut(s)	566, 729
Bst6I	CTCTTC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	1024
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	131, 1221
BstDEI	CTNAG	5 cut(s)	105, 290, 1028, 1208, 1250
BstDSI	CCRYGG	1 cut(s)	215
BstEII	GGTNACC	1 cut(s)	1137
BstF5I	GGATG	2 cut(s)	887, 1255
BstKTI	GATC	4 cut(s)	583, 658, 823, 1039
BstMAI	GTCTC	2 cut(s)	214, 1235
BstMBI	GATC	4 cut(s)	580, 655, 820, 1036
BstMCI	CGRYCG	1 cut(s)	731
BstMWI	GCNNNNNNNGC	5 cut(s)	439, 558, 1024, 1225, 1244
BstNSI	RCATGY	2 cut(s)	85, 1163
BstPI	GGTNACC	1 cut(s)	1137
BstSCI	CCNGG	1 cut(s)	1133
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	2 cut(s)	388, 1168
BstXI	CCANNNNNNTGG	1 cut(s)	1175
BsuRI	GGCC	6 cut(s)	52, 64, 151, 947, 1006, 1084
BtgI	CCRYGG	1 cut(s)	215
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	2 cut(s)	887, 1255
Cac8I	GCNNGC	2 cut(s)	131, 1221
Cfr13I	GGNCC	6 cut(s)	51, 149, 527, 946, 1004, 1165
CseI	GACGC	1 cut(s)	1217
Csp6I	GTAC	1 cut(s)	801
CviAII	CATG	8 cut(s)	75, 82, 443, 632, 962, 985, 1111, 1160
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	5 cut(s)	105, 290, 1028, 1208, 1250
DpnI	GATC	4 cut(s)	582, 657, 822, 1038
DpnII	GATC	4 cut(s)	580, 655, 820, 1036
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	1206
Eco31I	GGTCTC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	901
Eco47I	GGWCC	2 cut(s)	527, 1165
Eco57I	CTGAAG	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	1137
EcoO109I	RGGNCCY	1 cut(s)	946
EcoO65I	GGTNACC	1 cut(s)	1137
EcoRI	GAATTC	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	901
EcoT22I	ATGCAT	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	1206
Esp3I	CGTCTC	1 cut(s)	1235
FaeI	CATG	8 cut(s)	78, 85, 446, 635, 965, 988, 1114, 1163
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	8 cut(s)	74, 81, 442, 631, 961, 984, 1110, 1159
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	1020
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	3 cut(s)	50, 402, 1157
FokI	GGATG	2 cut(s)	894, 1242
FriOI	GRGCYC	1 cut(s)	1206
Fsp4HI	GCNGC	3 cut(s)	50, 402, 1157
FspBI	CTAG	3 cut(s)	531, 1101, 1269
GluI	GCNGC	3 cut(s)	50, 402, 1157
GsaI	CCCAGC	1 cut(s)	119
GsuI	CTGGAG	2 cut(s)	925, 1197
HaeIII	GGCC	6 cut(s)	52, 64, 151, 947, 1006, 1084
HapII	CCGG	2 cut(s)	860, 1135
HgaI	GACGC	1 cut(s)	1217
Hin1II	CATG	8 cut(s)	78, 85, 446, 635, 965, 988, 1114, 1163
HincII	GTYRAC	2 cut(s)	732, 840
HindII	GTYRAC	2 cut(s)	732, 840
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	2 cut(s)	614, 757
HpaII	CCGG	2 cut(s)	860, 1135
HphI	GGTGA	1 cut(s)	953
Hpy166II	GTNNAC	4 cut(s)	732, 840, 857, 1165
Hpy188I	TCNGA	5 cut(s)	260, 660, 691, 957, 1031
Hpy188III	TCNNGA	7 cut(s)	104, 395, 590, 754, 818, 904, 1101
Hpy8I	GTNNAC	4 cut(s)	732, 840, 857, 1165
Hpy99I	CGWCG	1 cut(s)	1044
HpyAV	CCTTC	3 cut(s)	432, 1056, 1275
HpyCH4III	ACNGT	2 cut(s)	566, 729
HpyCH4IV	ACGT	2 cut(s)	173, 246
HpyCH4V	TGCA	6 cut(s)	469, 631, 857, 918, 1125, 1156
HpyF10VI	GCNNNNNNNGC	5 cut(s)	439, 558, 1024, 1225, 1244
HpyF3I	CTNAG	5 cut(s)	105, 290, 1028, 1208, 1250
HpySE526I	ACGT	2 cut(s)	173, 246
Hsp92II	CATG	8 cut(s)	78, 85, 446, 635, 965, 988, 1114, 1163
Kzo9I	GATC	4 cut(s)	580, 655, 820, 1036
LmnI	GCTCC	7 cut(s)	383, 592, 973, 1067, 1091, 1209, 1225
Lsp1109I	GCAGC	2 cut(s)	388, 1168
LweI	GCATC	2 cut(s)	264, 985
MaeI	CTAG	3 cut(s)	531, 1101, 1269
MaeII	ACGT	2 cut(s)	173, 246
MaeIII	GTNAC	1 cut(s)	1137
MalI	GATC	4 cut(s)	582, 657, 822, 1038
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	4 cut(s)	580, 655, 820, 1036
MboII	GAAGA	2 cut(s)	86, 539
MhlI	GDGCHC	4 cut(s)	859, 1029, 1072, 1206
MluCI	AATT	8 cut(s)	120, 160, 265, 285, 369, 414, 478, 1127
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	2 cut(s)	269, 780
MslI	CAYNNNNRTG	3 cut(s)	701, 828, 852
MspA1I	CMGCKG	1 cut(s)	1223
MspI	CCGG	2 cut(s)	860, 1135
MspR9I	CCNGG	1 cut(s)	1135
MwoI	GCNNNNNNNGC	5 cut(s)	439, 558, 1024, 1225, 1244
NciI	CCSGG	1 cut(s)	1135
NdeI	CATATG	1 cut(s)	1020
NdeII	GATC	4 cut(s)	580, 655, 820, 1036
NlaIII	CATG	8 cut(s)	78, 85, 446, 635, 965, 988, 1114, 1163
NlaIV	GGNNCC	3 cut(s)	745, 1005, 1205
NsiI	ATGCAT	1 cut(s)	633
NspI	RCATGY	2 cut(s)	85, 1163
PceI	AGGCCT	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	850
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	757
PkrI	GCNGC	3 cut(s)	51, 403, 1158
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	1 cut(s)	247
PspEI	GGTNACC	1 cut(s)	1137
PspFI	CCCAGC	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	745, 1005, 1205
PspPI	GGNCC	6 cut(s)	51, 149, 527, 946, 1004, 1165
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
RseI	CAYNNNNRTG	3 cut(s)	701, 828, 852
SalI	GTCGAC	1 cut(s)	730
SaqAI	TTAA	2 cut(s)	269, 780
SatI	GCNGC	3 cut(s)	50, 402, 1157
Sau3AI	GATC	4 cut(s)	580, 655, 820, 1036
Sau96I	GGNCC	6 cut(s)	51, 149, 527, 946, 1004, 1165
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	1135
SduI	GDGCHC	4 cut(s)	859, 1029, 1072, 1206
SfaNI	GCATC	2 cut(s)	264, 985
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	2 cut(s)	527, 1165
SmiMI	CAYNNNNRTG	3 cut(s)	701, 828, 852
Sse9I	AATT	8 cut(s)	120, 160, 265, 285, 369, 414, 478, 1127
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	4 cut(s)	49, 129, 376, 1223
SspI	AATATT	2 cut(s)	673, 1055
SspMI	CTAG	3 cut(s)	531, 1101, 1269
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	1133
TaaI	ACNGT	2 cut(s)	566, 729
TaiI	ACGT	2 cut(s)	176, 249
TaqI	TCGA	3 cut(s)	67, 277, 731
TasI	AATT	8 cut(s)	120, 160, 265, 285, 369, 414, 478, 1127
TatI	WGTACW	1 cut(s)	800
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	757
Tru1I	TTAA	2 cut(s)	269, 780
Tru9I	TTAA	2 cut(s)	269, 780
TseI	GCWGC	2 cut(s)	401, 1156
TspDTI	ATGAA	3 cut(s)	357, 558, 675
TspGWI	ACGGA	2 cut(s)	204, 490
VneI	GTGCAC	1 cut(s)	855
VpaK11BI	GGWCC	2 cut(s)	527, 1165
XapI	RAATTY	2 cut(s)	265, 285
XbaI	TCTAGA	1 cut(s)	1100
XceI	RCATGY	2 cut(s)	85, 1163
XmiI	GTMKAC	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	3 cut(s)	531, 1101, 1269
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.