Rorug03G0088600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002302
Physical Location & Seq
Forward (+)
6911255 .. 6911702
448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0088600.1

Sequence Viewer

Length: 324 bp
ATGGAACCACGAACTCTGCAACTAATGGAGCTACAAACCCAGCAACAAATCGAGGATAGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTATGACAAGGGAGTTAAGTGCCCAACTGCAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAAAAGCAGATGAAAAGGTGCAATCAGGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

107

Amino Acids

12.69

Weight (kDa)

8.88

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 2.9e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 165
AfaI GTAC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 2 cut(s) 31, 223
AluI AGCT 2 cut(s) 31, 223
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 74, 317
AsuC2I CCSGG 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 285
BaeGI GKGCMC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 286
BauI CACGAG 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 86, 304
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 210
BisI GCNGC 2 cut(s) 75, 318
BlsI GCNGC 2 cut(s) 76, 319
Bme1390I CCNGG 2 cut(s) 79, 118
BmeT110I CYCGRG 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 6, 269
BmrFI CCNGG 2 cut(s) 79, 118
BpmI CTGGAG 2 cut(s) 117, 203
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 229
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 2 cut(s) 86, 304
BseYI CCCAGC 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 3 cut(s) 188, 201, 286
Bsp143I GATC 3 cut(s) 136, 157, 210
BspLI GGNNCC 2 cut(s) 6, 269
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 229
BssMI GATC 3 cut(s) 136, 157, 210
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 118
BstKTI GATC 3 cut(s) 139, 160, 213
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 136, 157, 210
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 2 cut(s) 77, 116
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 86, 304
BstX2I RGATCY 2 cut(s) 157, 210
BstYI RGATCY 2 cut(s) 157, 210
CsiI ACCWGGT 1 cut(s) 116
Csp6I GTAC 1 cut(s) 114
CviJI RGCY 6 cut(s) 31, 77, 111, 223, 284, 317
CviKI_1 RGCY 6 cut(s) 31, 77, 111, 223, 284, 317
CviQI GTAC 1 cut(s) 114
DpnI GATC 3 cut(s) 138, 159, 212
DpnII GATC 3 cut(s) 136, 157, 210
Eco24I GRGCYC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 286
FaiI YATR 2 cut(s) 168, 234
Fnu4HI GCNGC 2 cut(s) 75, 318
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 75, 318
GluI GCNGC 2 cut(s) 75, 318
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 2 cut(s) 117, 203
HapII CCGG 1 cut(s) 78
HinfI GANTC 2 cut(s) 124, 147
HpaII CCGG 1 cut(s) 78
Hpy188III TCNNGA 4 cut(s) 134, 206, 271, 287
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 19, 194, 309
HpySE526I ACGT 1 cut(s) 276
Kzo9I GATC 3 cut(s) 136, 157, 210
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 86, 304
MabI ACCWGGT 1 cut(s) 116
MaeII ACGT 1 cut(s) 276
MalI GATC 3 cut(s) 138, 159, 212
MboI GATC 3 cut(s) 136, 157, 210
MflI RGATCY 2 cut(s) 157, 210
MhlI GDGCHC 3 cut(s) 188, 201, 286
MnlI CCTC 4 cut(s) 46, 53, 161, 238
MseI TTAA 2 cut(s) 180, 322
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 79, 118
MvaI CCWGG 1 cut(s) 118
NciI CCSGG 1 cut(s) 79
NdeII GATC 3 cut(s) 136, 157, 210
NlaIV GGNNCC 2 cut(s) 6, 269
PaeR7I CTCGAG 1 cut(s) 285
PfeI GAWTC 2 cut(s) 124, 147
PkrI GCNGC 2 cut(s) 76, 319
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 6, 269
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 2 cut(s) 157, 210
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 2 cut(s) 180, 322
SatI GCNGC 2 cut(s) 75, 318
Sau3AI GATC 3 cut(s) 136, 157, 210
ScrFI CCNGG 2 cut(s) 79, 118
SduI GDGCHC 3 cut(s) 188, 201, 286
SetI ASST 6 cut(s) 33, 122, 225, 243, 279, 308
SexAI ACCWGGT 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 285
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 152, 285
SmoI CTYRAG 2 cut(s) 152, 285
StyD4I CCNGG 2 cut(s) 77, 116
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 51, 286
TfiI GAWTC 2 cut(s) 124, 147
Tru1I TTAA 2 cut(s) 180, 322
Tru9I TTAA 2 cut(s) 180, 322
TseI GCWGC 2 cut(s) 74, 317
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.