FvH4_4g25400

Serine threonine-protein kinase AFC2-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
27189828 .. 27193910
4083 bp
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UTR
Exon/CDS
Intron
FvH4_4g25400.t1

Sequence Viewer

Length: 1320 bp
ATGGAGATGGATTACGTCACGGAGTTTCCTCTCTCTCATATTGATCGGCGTCCCAGAAAGAGGCCCAGGTTCGCTTGGGACGGCCCCCAATCCCACCCAAAGGCTCAGTCAGGAATATATTATGAACAAGATGTTGGGAATGGAACGAGCTATGGACCTCCGAGGGTACACCCAGACCATCCTAGTCTTTTTGTAAAGGGGTTGACTCAAAAAGGCTCTCCCCCATGGCGAGAGGACGACAAAGATGGACATTACATGTTTGGTCTTGGAGAGAATTTGACTTCTCGCTATAAAATTCACCGGAAAATTGGAGAAGGAACTTTTGGTCAGGTTTTGGAATGCTGGGACAGGGAAACAAAGGAGATGGTAGCTATAAAAGTTGTCAGAAGTATCAAGAAATATCGCGAAGCAGCAATGATAGAAATTGATGTGCTACAGTTGCTTGGAAAGTATGACAGAAATGGCAGCCGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAACCATATATGTATAGTATTTGAGATGCTTGGACCAAGCCTATATGATTTCCTCCGGAAAAATAATTATCGCCCATTTCCTGTTGATCTTGTCCGCGAGCTTGGCAGGCAACTATTGGAATGTGTAGCATTCATACATGATATGCGTCTCATCCATACCGACTTGAAACCTGAGAATATACTGTTTGTTTCTCCAGAATATGTTAAAGTACCGGACTACAGGTTTGCATCCCGGTCCCCAAAAGATGGAACCTGTTATAGAAGGTTGCCAAAGTCTAGTGCTATCAAAGTTATTGATTTTGGTAGCACAGCGTATGAACATCAAGAGCACAACTATATTGTATCGACAAGGCACTATCGTGCACCTGAGGTCATTCTAGGACTTGGATGGAGTTATCCATGTGATATTTGGAGTATTGGCTGCATCCTGGTAGAGTTGTGTTCGGGAGAAGCTTTGTTTCAGACTCATGAAAACCTAGAACACCTGGCTATGATGGAACGGGTACTAGGTCCATTGCCGCAGCACATGTTAAAAAGAGCAGAGTATGTGCCGGCCATTGGAGGCCGCCATGCTGAAAAGTATGTGAGGAGGGGAAGGTTGGACTGGCCTGAAGGTGCAAATTCTCGGGAAAGTATTAAATCGGTATTAAAGCTACATCGCCTCCAGAATATAGTGATGCAGCATGTAGATCATTCAGCTGGTGATCTCATCGACCTCCTGCAAGGTCTCCTTAGATTTGAGCCCTCTAATAGGCTAACAGCTTCTGAAGCCCTAAGGCATCCCTTCTTTACCAGGGATCATTACAGAAGGTTCTAG

Protein Analysis

440

Amino Acids

51.2

Weight (kDa)

8.93

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 97 - 431 7.4e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 98 - 334 5e-20 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 749
AccII CGCG 2 cut(s) 405, 600
AccIII TCCGGA 1 cut(s) 558
AciI CCGC 3 cut(s) 598, 1022, 1069
AclWI GGATC 1 cut(s) 1308
AcoI YGGCCR 1 cut(s) 1056
AcsI RAATTY 3 cut(s) 274, 294, 1123
AcuI CTGAAG 2 cut(s) 1134, 1290
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 3 cut(s) 168, 714, 1008
AfiI CCNNNNNNNGG 5 cut(s) 60, 100, 749, 1061, 1254
AflIII ACRYGT 2 cut(s) 255, 1029
AgsI TTSAA 2 cut(s) 479, 670
AjnI CCWGG 4 cut(s) 65, 930, 987, 1295
AjuI GAANNNNNNNTTGG 4 cut(s) 117, 149, 306, 338
AleI CACNNNNGTG 1 cut(s) 861
AluBI AGCT 7 cut(s) 150, 371, 604, 956, 1156, 1202, 1265
AluI AGCT 7 cut(s) 150, 371, 604, 956, 1156, 1202, 1265
Alw21I GWGCWC 2 cut(s) 834, 868
Alw26I GTCTC 2 cut(s) 656, 1235
Alw44I GTGCAC 1 cut(s) 864
AlwI GGATC 1 cut(s) 1308
AlwNI CAGNNNCTG 1 cut(s) 1268
Ama87I CYCGRG 1 cut(s) 1128
Aor13HI TCCGGA 1 cut(s) 558
AoxI GGCC 5 cut(s) 62, 82, 1056, 1066, 1109
ApaLI GTGCAC 1 cut(s) 864
ApeKI GCWGC 5 cut(s) 410, 465, 924, 1024, 1183
ApoI RAATTY 3 cut(s) 274, 294, 1123
ArsI GACNNNNNNTTYG 4 cut(s) 92, 124, 710, 742
AspS9I GGNCC 6 cut(s) 63, 83, 155, 536, 738, 1013
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 2 cut(s) 290, 1217
AvaI CYCGRG 1 cut(s) 1128
AvaII GGWCC 4 cut(s) 155, 536, 738, 1013
AxyI CCTNAGG 2 cut(s) 870, 1277
BaeGI GKGCMC 1 cut(s) 868
BanII GRGCYC 1 cut(s) 1248
Bbv12I GWGCWC 2 cut(s) 834, 868
BbvI GCAGC 5 cut(s) 422, 477, 911, 1036, 1195
BccI CCATC 6 cut(s) 186, 239, 358, 743, 885, 991
BceAI ACGGC 2 cut(s) 97, 453
BciT130I CCWGG 4 cut(s) 67, 932, 989, 1297
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 2 cut(s) 656, 1235
BfaI CTAG 6 cut(s) 183, 780, 881, 980, 1010, 1318
BfmI CTRYAG 2 cut(s) 434, 721
BisI GCNGC 7 cut(s) 411, 466, 925, 1022, 1025, 1069, 1184
BlsI GCNGC 7 cut(s) 412, 467, 926, 1023, 1026, 1070, 1185
Bme1390I CCNGG 5 cut(s) 67, 736, 932, 989, 1297
Bme18I GGWCC 4 cut(s) 155, 536, 738, 1013
BmeT110I CYCGRG 1 cut(s) 1128
BmgT120I GGNCC 6 cut(s) 63, 83, 155, 536, 738, 1013
BmiI GGNNCC 3 cut(s) 85, 740, 754
BmrFI CCNGG 5 cut(s) 67, 736, 932, 989, 1297
BmsI GCATC 5 cut(s) 519, 740, 936, 1170, 1291
BpmI CTGGAG 2 cut(s) 681, 1151
BpuMI CCSGG 1 cut(s) 736
BsaHI GRCGYC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 1235
BsaJI CCNNGG 4 cut(s) 65, 161, 224, 1296
BsaWI WCCGGW 3 cut(s) 300, 558, 715
BsaXI ACNNNNNCTCC 2 cut(s) 1149, 1179
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 100, 749, 1061, 1254
Bse118I RCCGGY 1 cut(s) 1054
Bse1I ACTGG 2 cut(s) 494, 1112
Bse21I CCTNAGG 2 cut(s) 870, 1277
Bse3DI GCAATG 2 cut(s) 420, 1016
BseAI TCCGGA 1 cut(s) 558
BseBI CCWGG 4 cut(s) 67, 932, 989, 1297
BseDI CCNNGG 4 cut(s) 65, 161, 224, 1296
BseGI GGATG 6 cut(s) 178, 654, 731, 896, 927, 1282
BseLI CCNNNNNNNGG 5 cut(s) 60, 100, 749, 1061, 1254
BseMI GCAATG 2 cut(s) 420, 1016
BseMII CTCAG 3 cut(s) 119, 666, 861
BseNI ACTGG 2 cut(s) 494, 1112
BseRI GAGGAG 1 cut(s) 1105
BseSI GKGCMC 1 cut(s) 868
BseXI GCAGC 5 cut(s) 422, 477, 911, 1036, 1195
BseYI CCCAGC 1 cut(s) 342
Bsh1236I CGCG 2 cut(s) 405, 600
BshFI GGCC 5 cut(s) 64, 84, 1058, 1068, 1111
BsiHKAI GWGCWC 2 cut(s) 834, 868
BsiHKCI CYCGRG 1 cut(s) 1128
BsiSI CCGG 5 cut(s) 301, 559, 716, 736, 1055
BslFI GGGAC 4 cut(s) 36, 92, 359, 724
BslI CCNNNNNNNGG 5 cut(s) 60, 100, 749, 1061, 1254
BsmAI GTCTC 2 cut(s) 656, 1235
BsmBI CGTCTC 1 cut(s) 656
BsmFI GGGAC 4 cut(s) 36, 92, 359, 724
BsmI GAATGC 2 cut(s) 344, 632
BsnI GGCC 5 cut(s) 64, 84, 1058, 1068, 1111
Bso31I GGTCTC 1 cut(s) 1235
BsoBI CYCGRG 1 cut(s) 1128
Bsp1286I GDGCHC 3 cut(s) 834, 868, 1248
Bsp13I TCCGGA 1 cut(s) 558
Bsp143I GATC 5 cut(s) 43, 589, 1192, 1207, 1300
Bsp19I CCATGG 1 cut(s) 224
Bsp68I TCGCGA 1 cut(s) 405
BspACI CCGC 3 cut(s) 598, 1022, 1069
BspANI GGCC 5 cut(s) 64, 84, 1058, 1068, 1111
BspCNI CTCAG 3 cut(s) 118, 667, 862
BspEI TCCGGA 1 cut(s) 558
BspFNI CGCG 2 cut(s) 405, 600
BspHI TCATGA 1 cut(s) 970
BspLI GGNNCC 3 cut(s) 85, 740, 754
BspPI GGATC 1 cut(s) 1308
BspTNI GGTCTC 1 cut(s) 1235
BsrDI GCAATG 2 cut(s) 420, 1016
BsrFI RCCGGY 1 cut(s) 1054
BsrI ACTGG 2 cut(s) 494, 1112
BssAI RCCGGY 1 cut(s) 1054
BssECI CCNNGG 4 cut(s) 65, 161, 224, 1296
BssMI GATC 5 cut(s) 43, 589, 1192, 1207, 1300
BssNI GRCGYC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 224
Bst2UI CCWGG 4 cut(s) 67, 932, 989, 1297
Bst4CI ACNGT 2 cut(s) 438, 687
BstACI GRCGYC 1 cut(s) 49
BstC8I GCNNGC 3 cut(s) 602, 611, 1056
BstDEI CTNAG 5 cut(s) 105, 675, 870, 1235, 1277
BstDSI CCRYGG 1 cut(s) 224
BstENI CCTNNNNNAGG 1 cut(s) 1252
BstF5I GGATG 6 cut(s) 178, 654, 731, 896, 927, 1282
BstFNI CGCG 2 cut(s) 405, 600
BstKTI GATC 5 cut(s) 46, 592, 1195, 1210, 1303
BstMAI GTCTC 2 cut(s) 656, 1235
BstMBI GATC 5 cut(s) 43, 589, 1192, 1207, 1300
BstMWI GCNNNNNNNGC 4 cut(s) 439, 606, 610, 1271
BstNI CCWGG 4 cut(s) 67, 932, 989, 1297
BstNSI RCATGY 3 cut(s) 259, 1033, 1190
BstSCI CCNGG 5 cut(s) 65, 734, 930, 987, 1295
BstSFI CTRYAG 2 cut(s) 434, 721
BstSLI GKGCMC 1 cut(s) 868
BstUI CGCG 2 cut(s) 405, 600
BstV1I GCAGC 5 cut(s) 422, 477, 911, 1036, 1195
Bsu36I CCTNAGG 2 cut(s) 870, 1277
BsuRI GGCC 5 cut(s) 64, 84, 1058, 1068, 1111
BtgI CCRYGG 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 1145
BtsCI GGATG 6 cut(s) 178, 654, 731, 896, 927, 1282
BtuMI TCGCGA 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 602, 611, 1056
CaiI CAGNNNCTG 1 cut(s) 1268
CciI TCATGA 1 cut(s) 970
Cfr10I RCCGGY 1 cut(s) 1054
Cfr13I GGNCC 6 cut(s) 63, 83, 155, 536, 738, 1013
CseI GACGC 2 cut(s) 38, 638
Csp6I GTAC 3 cut(s) 167, 713, 1007
CviAII CATG 8 cut(s) 225, 256, 641, 903, 971, 1030, 1073, 1187
CviQI GTAC 3 cut(s) 167, 713, 1007
DdeI CTNAG 5 cut(s) 105, 675, 870, 1235, 1277
DpnI GATC 5 cut(s) 45, 591, 1194, 1209, 1302
DpnII GATC 5 cut(s) 43, 589, 1192, 1207, 1300
EaeI YGGCCR 1 cut(s) 1056
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 1248
Eco31I GGTCTC 1 cut(s) 1235
Eco47I GGWCC 4 cut(s) 155, 536, 738, 1013
Eco57I CTGAAG 2 cut(s) 1134, 1290
Eco81I CCTNAGG 2 cut(s) 870, 1277
Eco88I CYCGRG 1 cut(s) 1128
EcoNI CCTNNNNNAGG 1 cut(s) 1252
EcoRII CCWGG 4 cut(s) 65, 930, 987, 1295
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 1248
ErhI CCWWGG 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 8 cut(s) 228, 259, 644, 906, 974, 1033, 1076, 1190
FalI AAGNNNNNCTT 2 cut(s) 1218, 1250
FaqI GGGAC 4 cut(s) 36, 92, 359, 724
FatI CATG 8 cut(s) 224, 255, 640, 902, 970, 1029, 1072, 1186
Fnu4HI GCNGC 7 cut(s) 411, 466, 925, 1022, 1025, 1069, 1184
FokI GGATG 6 cut(s) 165, 641, 718, 903, 914, 1269
FriOI GRGCYC 1 cut(s) 1248
Fsp4HI GCNGC 7 cut(s) 411, 466, 925, 1022, 1025, 1069, 1184
FspBI CTAG 6 cut(s) 183, 780, 881, 980, 1010, 1318
GluI GCNGC 7 cut(s) 411, 466, 925, 1022, 1025, 1069, 1184
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 2 cut(s) 681, 1151
HaeIII GGCC 5 cut(s) 64, 84, 1058, 1068, 1111
HapII CCGG 5 cut(s) 301, 559, 716, 736, 1055
HgaI GACGC 2 cut(s) 38, 638
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 8 cut(s) 228, 259, 644, 906, 974, 1033, 1076, 1190
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 954
HinfI GANTC 2 cut(s) 205, 967
HpaII CCGG 5 cut(s) 301, 559, 716, 736, 1055
HphI GGTGA 2 cut(s) 290, 1217
Hpy166II GTNNAC 3 cut(s) 169, 204, 866
Hpy188I TCNGA 4 cut(s) 162, 386, 966, 1270
Hpy8I GTNNAC 3 cut(s) 169, 204, 866
HpyAV CCTTC 6 cut(s) 308, 759, 1092, 1109, 1297, 1305
HpyCH4III ACNGT 2 cut(s) 438, 687
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 6 cut(s) 731, 866, 927, 1121, 1183, 1225
HpyF10VI GCNNNNNNNGC 4 cut(s) 439, 606, 610, 1271
HpyF3I CTNAG 5 cut(s) 105, 675, 870, 1235, 1277
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 8 cut(s) 228, 259, 644, 906, 974, 1033, 1076, 1190
Kpn2I TCCGGA 1 cut(s) 558
KroI GCCGGC 1 cut(s) 1054
KroNI GCCGGC 1 cut(s) 1056
Kzo9I GATC 5 cut(s) 43, 589, 1192, 1207, 1300
Lsp1109I GCAGC 5 cut(s) 422, 477, 911, 1036, 1195
LweI GCATC 5 cut(s) 519, 740, 936, 1170, 1291
MaeI CTAG 6 cut(s) 183, 780, 881, 980, 1010, 1318
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 16, 503
MalI GATC 5 cut(s) 45, 591, 1194, 1209, 1302
MboI GATC 5 cut(s) 43, 589, 1192, 1207, 1300
MhlI GDGCHC 3 cut(s) 834, 868, 1248
MluCI AATT 6 cut(s) 274, 294, 306, 423, 568, 1123
MlyI GAGTC 2 cut(s) 199, 961
MmeI TCCRAC 1 cut(s) 1083
MroI TCCGGA 1 cut(s) 558
MroNI GCCGGC 1 cut(s) 1054
MseI TTAA 4 cut(s) 708, 1034, 1140, 1151
MslI CAYNNNNRTG 1 cut(s) 861
MspA1I CMGCKG 1 cut(s) 1202
MspI CCGG 5 cut(s) 301, 559, 716, 736, 1055
MspR9I CCNGG 5 cut(s) 67, 736, 932, 989, 1297
Mva1269I GAATGC 2 cut(s) 344, 632
MvaI CCWGG 4 cut(s) 67, 932, 989, 1297
MvnI CGCG 2 cut(s) 405, 600
MwoI GCNNNNNNNGC 4 cut(s) 439, 606, 610, 1271
NaeI GCCGGC 1 cut(s) 1056
NciI CCSGG 1 cut(s) 736
NcoI CCATGG 1 cut(s) 224
NdeII GATC 5 cut(s) 43, 589, 1192, 1207, 1300
NgoMIV GCCGGC 1 cut(s) 1054
NlaIII CATG 8 cut(s) 228, 259, 644, 906, 974, 1033, 1076, 1190
NlaIV GGNNCC 3 cut(s) 85, 740, 754
NmuCI GTSAC 1 cut(s) 16
NruI TCGCGA 1 cut(s) 405
NspI RCATGY 3 cut(s) 259, 1033, 1190
OliI CACNNNNGTG 1 cut(s) 861
PagI TCATGA 1 cut(s) 970
PciI ACATGT 2 cut(s) 255, 1029
PctI GAATGC 2 cut(s) 344, 632
PdiI GCCGGC 1 cut(s) 1056
PflMI CCANNNNNTGG 1 cut(s) 749
PkrI GCNGC 7 cut(s) 412, 467, 926, 1023, 1026, 1070, 1185
PleI GAGTC 2 cut(s) 199, 961
PpsI GAGTC 2 cut(s) 199, 961
PscI ACATGT 2 cut(s) 255, 1029
Psp6I CCWGG 4 cut(s) 65, 930, 987, 1295
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 4 cut(s) 65, 930, 987, 1295
PspN4I GGNNCC 3 cut(s) 85, 740, 754
PspPI GGNCC 6 cut(s) 63, 83, 155, 536, 738, 1013
PstNI CAGNNNCTG 1 cut(s) 1268
PvuII CAGCTG 1 cut(s) 1202
RruI TCGCGA 1 cut(s) 405
RsaI GTAC 3 cut(s) 168, 714, 1008
RsaNI GTAC 3 cut(s) 167, 713, 1007
RseI CAYNNNNRTG 1 cut(s) 861
SaqAI TTAA 4 cut(s) 708, 1034, 1140, 1151
SatI GCNGC 7 cut(s) 411, 466, 925, 1022, 1025, 1069, 1184
Sau3AI GATC 5 cut(s) 43, 589, 1192, 1207, 1300
Sau96I GGNCC 6 cut(s) 63, 83, 155, 536, 738, 1013
SchI GAGTC 2 cut(s) 199, 961
ScrFI CCNGG 5 cut(s) 67, 736, 932, 989, 1297
SduI GDGCHC 3 cut(s) 834, 868, 1248
SfaNI GCATC 5 cut(s) 519, 740, 936, 1170, 1291
SfcI CTRYAG 2 cut(s) 434, 721
SinI GGWCC 4 cut(s) 155, 536, 738, 1013
SmiMI CAYNNNNRTG 1 cut(s) 861
Sse9I AATT 6 cut(s) 274, 294, 306, 423, 568, 1123
SsiI CCGC 3 cut(s) 598, 1022, 1069
SspMI CTAG 6 cut(s) 183, 780, 881, 980, 1010, 1318
StyD4I CCNGG 5 cut(s) 65, 734, 930, 987, 1295
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 438, 687
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 848, 1215
TasI AATT 6 cut(s) 274, 294, 306, 423, 568, 1123
TauI GCSGC 2 cut(s) 1024, 1071
Tru1I TTAA 4 cut(s) 708, 1034, 1140, 1151
Tru9I TTAA 4 cut(s) 708, 1034, 1140, 1151
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 5 cut(s) 410, 465, 924, 1024, 1183
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 4 cut(s) 138, 625, 834, 987
TspGWI ACGGA 2 cut(s) 35, 499
Van91I CCANNNNNTGG 1 cut(s) 749
VneI GTGCAC 1 cut(s) 864
VpaK11BI GGWCC 4 cut(s) 155, 536, 738, 1013
XagI CCTNNNNNAGG 1 cut(s) 1252
XapI RAATTY 3 cut(s) 274, 294, 1123
XceI RCATGY 3 cut(s) 259, 1033, 1190
XcmI CCANNNNNNNNNTGG 1 cut(s) 909
XspI CTAG 6 cut(s) 183, 780, 881, 980, 1010, 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.