Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8522421.1

Orthogroup ID

OG0002302

Physical Location & Seq

Genomic Coordinates Reverse (-)

6436 .. 8509

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8522421.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgactataggaacttttggtcaggttttggaatgctgggacagggaaacaaaggagatggtagctataaaagttgtcagaagtatcaagaaataccgtgaagcagcaatgatagaaattgatgtgctacagttgcttggaaagtatgacagaaatggcagtcgttgtgttcaaatacggaactggtttgactatcgtaaccatatatgtatagtatttgagatgcttggaccaagcttatatgatttcctccggaaaaataattatcgcccatttccggttgatcttgtccgcgagcttggcaggcaactattggaatgtgtagcattcatacatgatatgcgtctcatccatactgacttgaagcctgagaatatactttttgtttcgccagaatatattaaagtaccggactacaggttcacatcccggtcaccaaaagatggaacctgttatagaaggttgccaaagtctagtgctatcaaagttattgattttggtagcacagcgtatgagcatcaagagcacaactatattgtatcgacaaggcactaccgcgcacctgaggtcattctaggacttggatggagttatccatgtgacatttggagtattggctgcatcttggtagagttgtgttcgggagaagccttgtttcagacacatgagaacttagaacacctggctatgatggaaagggtactaggtccattgccacagcacatgttaaaaagagcagaccgccatgctgagaagtatgtcaggaggggtaggttggactggcctgaaggtgcaaattctcgggaaagtattaaatctgttttaaagctacatcgtctccagaatatagtgatgcaacatgtagatcattcagctggtgatctgatcgacctcctgcaaggtctccttagatttgagccctctaataggctaacagctcctgaagccctaaggcatcccttctttaccagggatcattacagaaggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

330

Amino Acids

38.77

Weight (kDa)

8.82

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53570 AT3G53570 AT3G53570 AT3G53570 AT3G53570
fragaria_vesca	FvH4_4g25400 FvH4_4g25400 FvH4_4g25400 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570
malus_domestica	MD12G1136400.v1.1 MD16G1103500.v1.1
prunus_persica	Prupe.1G242500_v2.0.a1 Prupe.1G242500_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1
pyrus_communis	pycom13g09030
rosa_chinensis	RchiOBHm_Chr3g0467621 RchiOBHm_Chr4g0432711
rosa_laevigata	RLG00000006818 RLG00000024484
rosa_multiflora	Rmu_co8522421.1_g000003 Rmu_sc0012180.1_g000012
rosa_roxburghii	Rroxscaffold_5G00374170 Rroxscaffold_6G00413540
rosa_rugosa	Rorug03G0088600 Rorug04G0261900 Rorug04G0262000 Rorug04G0262000
rosa_samantha	Rh3AG136900 Rh3BG158700 Rh3CG158300 Rh3DG159200 Rh4AG316300 Rh4BG324300 Rh4CG339300 Rh4DG319600
rosa_wichuraiana	Rw3G012970 Rw4G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	443
AccII	CGCG	2 cut(s)	294, 558
AccIII	TCCGGA	1 cut(s)	252
AciI	CCGC	3 cut(s)	292, 556, 742
AclWI	GGATC	1 cut(s)	981
AcsI	RAATTY	1 cut(s)	796
AcuI	CTGAAG	2 cut(s)	807, 963
AfaI	GTAC	2 cut(s)	408, 702
AfiI	CCNNNNNNNGG	3 cut(s)	277, 443, 927
AflIII	ACRYGT	2 cut(s)	723, 859
AgsI	TTSAA	2 cut(s)	173, 364
AjnI	CCWGG	2 cut(s)	681, 968
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
AluBI	AGCT	6 cut(s)	65, 237, 298, 829, 875, 938
AluI	AGCT	6 cut(s)	65, 237, 298, 829, 875, 938
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	3 cut(s)	350, 842, 908
AlwI	GGATC	1 cut(s)	981
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	1 cut(s)	801
Aor13HI	TCCGGA	1 cut(s)	252
AoxI	GGCC	1 cut(s)	782
ApeKI	GCWGC	2 cut(s)	104, 618
ApoI	RAATTY	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	2 cut(s)	230, 707
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	426, 890
AvaI	CYCGRG	1 cut(s)	801
AvaII	GGWCC	2 cut(s)	230, 707
AxyI	CCTNAGG	2 cut(s)	564, 950
BanII	GRGCYC	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	116, 605
BccI	CCATC	4 cut(s)	52, 437, 579, 685
BciT130I	CCWGG	2 cut(s)	683, 970
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	350, 842, 908
BfaI	CTAG	3 cut(s)	474, 575, 704
BfmI	CTRYAG	3 cut(s)	6, 128, 415
BisI	GCNGC	2 cut(s)	105, 619
BlsI	GCNGC	2 cut(s)	106, 620
Bme1390I	CCNGG	3 cut(s)	430, 683, 970
Bme18I	GGWCC	2 cut(s)	230, 707
BmeT110I	CYCGRG	1 cut(s)	801
BmgT120I	GGNCC	2 cut(s)	230, 707
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	3 cut(s)	430, 683, 970
BmsI	GCATC	5 cut(s)	213, 526, 630, 843, 964
BpmI	CTGGAG	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	430
BsaI	GGTCTC	1 cut(s)	908
BsaJI	CCNNGG	1 cut(s)	969
BsaWI	WCCGGW	3 cut(s)	252, 277, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 443, 927
Bse1I	ACTGG	2 cut(s)	188, 785
Bse21I	CCTNAGG	2 cut(s)	564, 950
Bse3DI	GCAATG	2 cut(s)	114, 710
BseAI	TCCGGA	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	683, 970
BseDI	CCNNGG	1 cut(s)	969
BseGI	GGATG	4 cut(s)	348, 425, 590, 955
BseLI	CCNNNNNNNGG	3 cut(s)	277, 443, 927
BseMI	GCAATG	2 cut(s)	114, 710
BseMII	CTCAG	3 cut(s)	360, 555, 741
BseNI	ACTGG	2 cut(s)	188, 785
BseXI	GCAGC	2 cut(s)	116, 605
BseYI	CCCAGC	1 cut(s)	36
Bsh1236I	CGCG	2 cut(s)	294, 558
BshFI	GGCC	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	801
BsiSI	CCGG	4 cut(s)	253, 278, 410, 430
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	277, 443, 927
BsmAI	GTCTC	3 cut(s)	350, 842, 908
BsmBI	CGTCTC	2 cut(s)	350, 842
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	2 cut(s)	38, 326
BsnI	GGCC	1 cut(s)	784
Bso31I	GGTCTC	1 cut(s)	908
BsoBI	CYCGRG	1 cut(s)	801
Bsp1286I	GDGCHC	2 cut(s)	528, 921
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	5 cut(s)	283, 865, 880, 885, 973
BspACI	CCGC	3 cut(s)	292, 556, 742
BspANI	GGCC	1 cut(s)	784
BspCNI	CTCAG	3 cut(s)	361, 556, 742
BspEI	TCCGGA	1 cut(s)	252
BspFNI	CGCG	2 cut(s)	294, 558
BspLI	GGNNCC	1 cut(s)	448
BspPI	GGATC	1 cut(s)	981
BspTNI	GGTCTC	1 cut(s)	908
BsrDI	GCAATG	2 cut(s)	114, 710
BsrI	ACTGG	2 cut(s)	188, 785
BssECI	CCNNGG	1 cut(s)	969
BssMI	GATC	5 cut(s)	283, 865, 880, 885, 973
Bst2UI	CCWGG	2 cut(s)	683, 970
Bst4CI	ACNGT	2 cut(s)	98, 132
BstC8I	GCNNGC	2 cut(s)	296, 305
BstDEI	CTNAG	6 cut(s)	369, 564, 673, 750, 908, 950
BstEII	GGTNACC	1 cut(s)	432
BstENI	CCTNNNNNAGG	1 cut(s)	925
BstF5I	GGATG	4 cut(s)	348, 425, 590, 955
BstFNI	CGCG	2 cut(s)	294, 558
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	5 cut(s)	286, 868, 883, 888, 976
BstMAI	GTCTC	3 cut(s)	350, 842, 908
BstMBI	GATC	5 cut(s)	283, 865, 880, 885, 973
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 300, 304, 523, 944
BstNI	CCWGG	2 cut(s)	683, 970
BstNSI	RCATGY	2 cut(s)	727, 863
BstPI	GGTNACC	1 cut(s)	432
BstSCI	CCNGG	3 cut(s)	428, 681, 968
BstSFI	CTRYAG	3 cut(s)	6, 128, 415
BstUI	CGCG	2 cut(s)	294, 558
BstV1I	GCAGC	2 cut(s)	116, 605
Bsu36I	CCTNAGG	2 cut(s)	564, 950
BsuRI	GGCC	1 cut(s)	784
BtsCI	GGATG	4 cut(s)	348, 425, 590, 955
Cac8I	GCNNGC	2 cut(s)	296, 305
CaiI	CAGNNNCTG	1 cut(s)	941
CfoI	GCGC	1 cut(s)	560
Cfr13I	GGNCC	2 cut(s)	230, 707
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	407, 701
CviAII	CATG	6 cut(s)	335, 597, 665, 724, 746, 860
CviQI	GTAC	2 cut(s)	407, 701
DdeI	CTNAG	6 cut(s)	369, 564, 673, 750, 908, 950
DpnI	GATC	5 cut(s)	285, 867, 882, 887, 975
DpnII	GATC	5 cut(s)	283, 865, 880, 885, 973
DraI	TTTAAA	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	921
Eco31I	GGTCTC	1 cut(s)	908
Eco47I	GGWCC	2 cut(s)	230, 707
Eco57I	CTGAAG	2 cut(s)	807, 963
Eco81I	CCTNAGG	2 cut(s)	564, 950
Eco88I	CYCGRG	1 cut(s)	801
Eco91I	GGTNACC	1 cut(s)	432
EcoNI	CCTNNNNNAGG	1 cut(s)	925
EcoO65I	GGTNACC	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	681, 968
EcoT38I	GRGCYC	1 cut(s)	921
Esp3I	CGTCTC	2 cut(s)	350, 842
FaeI	CATG	6 cut(s)	338, 600, 668, 727, 749, 863
FalI	AAGNNNNNCTT	2 cut(s)	891, 923
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	6 cut(s)	334, 596, 664, 723, 745, 859
Fnu4HI	GCNGC	2 cut(s)	105, 619
FokI	GGATG	4 cut(s)	335, 412, 597, 942
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	2 cut(s)	105, 619
FspBI	CTAG	3 cut(s)	474, 575, 704
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	2 cut(s)	105, 619
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	824
HaeIII	GGCC	1 cut(s)	784
HapII	CCGG	4 cut(s)	253, 278, 410, 430
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	6 cut(s)	338, 600, 668, 727, 749, 863
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HindIII	AAGCTT	1 cut(s)	235
HpaII	CCGG	4 cut(s)	253, 278, 410, 430
HphI	GGTGA	2 cut(s)	426, 890
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	3 cut(s)	80, 660, 885
Hpy188III	TCNNGA	8 cut(s)	88, 253, 521, 642, 763, 803, 841, 941
Hpy8I	GTNNAC	1 cut(s)	423
HpyAV	CCTTC	4 cut(s)	453, 782, 970, 978
HpyCH4III	ACNGT	2 cut(s)	98, 132
HpyCH4V	TGCA	4 cut(s)	621, 794, 856, 898
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 300, 304, 523, 944
HpyF3I	CTNAG	6 cut(s)	369, 564, 673, 750, 908, 950
Hsp92II	CATG	6 cut(s)	338, 600, 668, 727, 749, 863
HspAI	GCGC	1 cut(s)	558
Kpn2I	TCCGGA	1 cut(s)	252
Kzo9I	GATC	5 cut(s)	283, 865, 880, 885, 973
LmnI	GCTCC	1 cut(s)	943
Lsp1109I	GCAGC	2 cut(s)	116, 605
LweI	GCATC	5 cut(s)	213, 526, 630, 843, 964
MaeI	CTAG	3 cut(s)	474, 575, 704
MaeIII	GTNAC	3 cut(s)	197, 432, 599
MalI	GATC	5 cut(s)	285, 867, 882, 887, 975
MboI	GATC	5 cut(s)	283, 865, 880, 885, 973
MhlI	GDGCHC	2 cut(s)	528, 921
MluCI	AATT	3 cut(s)	117, 262, 796
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	5 cut(s)	260, 559, 759, 902, 931
MroI	TCCGGA	1 cut(s)	252
MseI	TTAA	4 cut(s)	402, 728, 813, 824
MspA1I	CMGCKG	1 cut(s)	875
MspI	CCGG	4 cut(s)	253, 278, 410, 430
MspR9I	CCNGG	3 cut(s)	430, 683, 970
Mva1269I	GAATGC	2 cut(s)	38, 326
MvaI	CCWGG	2 cut(s)	683, 970
MvnI	CGCG	2 cut(s)	294, 558
MwoI	GCNNNNNNNGC	5 cut(s)	133, 300, 304, 523, 944
NciI	CCSGG	1 cut(s)	430
NdeII	GATC	5 cut(s)	283, 865, 880, 885, 973
NlaIII	CATG	6 cut(s)	338, 600, 668, 727, 749, 863
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	432, 599
NspI	RCATGY	2 cut(s)	727, 863
PciI	ACATGT	2 cut(s)	723, 859
PctI	GAATGC	2 cut(s)	38, 326
PflMI	CCANNNNNTGG	1 cut(s)	443
PkrI	GCNGC	2 cut(s)	106, 620
PscI	ACATGT	2 cut(s)	723, 859
Psp6I	CCWGG	2 cut(s)	681, 968
PspEI	GGTNACC	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	2 cut(s)	681, 968
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	2 cut(s)	230, 707
PstNI	CAGNNNCTG	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	408, 702
RsaNI	GTAC	2 cut(s)	407, 701
SaqAI	TTAA	4 cut(s)	402, 728, 813, 824
SatI	GCNGC	2 cut(s)	105, 619
Sau3AI	GATC	5 cut(s)	283, 865, 880, 885, 973
Sau96I	GGNCC	2 cut(s)	230, 707
ScrFI	CCNGG	3 cut(s)	430, 683, 970
SduI	GDGCHC	2 cut(s)	528, 921
SfaNI	GCATC	5 cut(s)	213, 526, 630, 843, 964
SfcI	CTRYAG	3 cut(s)	6, 128, 415
SinI	GGWCC	2 cut(s)	230, 707
Sse9I	AATT	3 cut(s)	117, 262, 796
SsiI	CCGC	3 cut(s)	292, 556, 742
SspMI	CTAG	3 cut(s)	474, 575, 704
StyD4I	CCNGG	3 cut(s)	428, 681, 968
TaaI	ACNGT	2 cut(s)	98, 132
TaqI	TCGA	2 cut(s)	542, 888
TasI	AATT	3 cut(s)	117, 262, 796
Tru1I	TTAA	4 cut(s)	402, 728, 813, 824
Tru9I	TTAA	4 cut(s)	402, 728, 813, 824
TseFI	GTSAC	2 cut(s)	432, 599
TseI	GCWGC	2 cut(s)	104, 618
Tsp45I	GTSAC	2 cut(s)	432, 599
TspDTI	ATGAA	1 cut(s)	319
TspGWI	ACGGA	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	443
VpaK11BI	GGWCC	2 cut(s)	230, 707
XagI	CCTNNNNNAGG	1 cut(s)	925
XapI	RAATTY	1 cut(s)	796
XceI	RCATGY	2 cut(s)	727, 863
XcmI	CCANNNNNNNNNTGG	1 cut(s)	603
XspI	CTAG	3 cut(s)	474, 575, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.