Rw4G027510

Serine threonine-protein kinase AFC2-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
54049313 .. 54052651
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027510.1

Sequence Viewer

Length: 1299 bp
ATGGAGATGGATTACGTGACGGAGTTTCCTCTCTCTCATATTGATCGGCGCCCCAGAAAGAGGCCCAGGTTCGCTTGGGACGGCCCCCAATCCCACCCAAAGGCTCAGTCAGGAATGTATTATGAGCAAGATGTTGGAAATGGAACAAGCTATGGACATCCGAGGGTACACCCAGACCATCCTAGTCTTTTTGTAAAGGGGTTGACTCAAAAAGGCTCTCCCCCATGGCGTGAGGATGACAAAGATGGACATTACATGTTTGCTGTTGGAGAGAATTTAACTTCTCGCTATAAAATTCACAGGAAAATTGGGGAAGGAACTTTTGGTCAGGTTTTGGAATGCTGGGACAGGGAAACAAAGGAGATGGTAGCTATAAAAGTTGTCAGAAGTATCAAGAAATACCGTGAAGCAGCAATGATAGAAATTGATGTGCTACAGTTGCTTGGAAAGTATGACAGAAATGGCAGTCGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAACCATATATGTATAGTATTTGAGATGCTTGGACCAAGCTTATATGATTTCCTCCGGAAAAATAATTATCGCCCATTTCCGGTTGATCTTGTCCGCGAGCTTGGCAGGCAACTATTGGAATGTGTAGCATTCATACATGATATGCGTCTCATCCATACTGACTTGAAGCCTGAGAATATACTTTTTGTTTCGCCAGAATATATTAAAGTACCGGACTACAGGTTCACATCCCGGTCACCAAAAGATGGAACCTGTTATAGAAGGTTGCCAAAGTCTAGTGCTATCAAAGTTATTGATTTTGGTAGCACAGCGTATGAGCATCAAGAGCACAACTATATTGTATCGACAAGGCACTACCGCGCACCTGAGGTCATTCTAGGACTTGGATGGAGTTATCCATGTGACATTTGGAGTATTGGCTGCATCTTGGTAGAGTTGTGTTCGGGAGAAGCCTTGTTTCAGACACATGAGAACTTAGAACACCTGGCTATGATGGAAAGGGTACTAGGTCCATTGCCACAGCACATGTTAAAAAGAGCAGACCGCCATGCTGAGAAGTATGTCAGGAGGGGTAGGTTGGACTGGCCTGAAGGTGCAAATTCTCGGGAAAGTATTAAATCTGTTTTAAAGCTACATCGTCTCCAGAATATAGTGATGCAACATGTAGATCATTCAGCTGGTGATCTGATCGACCTCCTGCAAGGTCTCCTTAGATTTGAGCCCTCTAATAGGCTAACAGCTCCTGAAGCCCTAAGGCATCCCTTCTTTACCAGGGATCATTACAGAAGGTTTTAG

Protein Analysis

432

Amino Acids

50.64

Weight (kDa)

8.93

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 97 - 424 3.5e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 98 - 334 4.9e-20 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AccB7I CCANNNNNTGG 1 cut(s) 749
AccII CGCG 2 cut(s) 600, 864
AccIII TCCGGA 1 cut(s) 558
AciI CCGC 3 cut(s) 598, 862, 1048
AclWI GGATC 1 cut(s) 1287
AcsI RAATTY 3 cut(s) 274, 294, 1102
AcuI CTGAAG 2 cut(s) 1113, 1269
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 3 cut(s) 168, 714, 1008
AfiI CCNNNNNNNGG 5 cut(s) 60, 100, 583, 749, 1233
AflIII ACRYGT 3 cut(s) 255, 1029, 1165
AgsI TTSAA 2 cut(s) 479, 670
AjnI CCWGG 3 cut(s) 65, 987, 1274
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AloI GAACNNNNNNTCC 2 cut(s) 710, 742
AluBI AGCT 7 cut(s) 150, 371, 543, 604, 1135, 1181, 1244
AluI AGCT 7 cut(s) 150, 371, 543, 604, 1135, 1181, 1244
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 3 cut(s) 656, 1148, 1214
AlwI GGATC 1 cut(s) 1287
AlwNI CAGNNNCTG 1 cut(s) 1247
Ama87I CYCGRG 1 cut(s) 1107
Aor13HI TCCGGA 1 cut(s) 558
AoxI GGCC 3 cut(s) 62, 82, 1088
ApeKI GCWGC 2 cut(s) 410, 924
ApoI RAATTY 3 cut(s) 274, 294, 1102
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspLEI GCGC 2 cut(s) 51, 866
AspS9I GGNCC 4 cut(s) 63, 83, 536, 1013
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 2 cut(s) 732, 1196
AvaI CYCGRG 1 cut(s) 1107
AvaII GGWCC 2 cut(s) 536, 1013
AxyI CCTNAGG 2 cut(s) 870, 1256
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 1227
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 2 cut(s) 422, 911
BccI CCATC 6 cut(s) 186, 239, 358, 743, 885, 991
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 3 cut(s) 67, 989, 1276
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 3 cut(s) 656, 1148, 1214
BfaI CTAG 4 cut(s) 183, 780, 881, 1010
BfmI CTRYAG 2 cut(s) 434, 721
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 2 cut(s) 411, 925
BlsI GCNGC 2 cut(s) 412, 926
Bme1390I CCNGG 4 cut(s) 67, 736, 989, 1276
Bme18I GGWCC 2 cut(s) 536, 1013
BmeT110I CYCGRG 1 cut(s) 1107
BmgT120I GGNCC 4 cut(s) 63, 83, 536, 1013
BmiI GGNNCC 3 cut(s) 50, 85, 754
BmrFI CCNGG 4 cut(s) 67, 736, 989, 1276
BmsI GCATC 5 cut(s) 519, 832, 936, 1149, 1270
BpmI CTGGAG 1 cut(s) 1130
BpuMI CCSGG 1 cut(s) 736
BsaAI YACGTR 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 1214
BsaJI CCNNGG 4 cut(s) 65, 161, 224, 1275
BsaWI WCCGGW 3 cut(s) 558, 583, 715
BsaXI ACNNNNNCTCC 2 cut(s) 1128, 1158
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 100, 583, 749, 1233
Bse1I ACTGG 2 cut(s) 494, 1091
Bse21I CCTNAGG 2 cut(s) 870, 1256
Bse3DI GCAATG 2 cut(s) 420, 1016
BseAI TCCGGA 1 cut(s) 558
BseBI CCWGG 3 cut(s) 67, 989, 1276
BseDI CCNNGG 4 cut(s) 65, 161, 224, 1275
BseGI GGATG 7 cut(s) 157, 178, 241, 654, 731, 896, 1261
BseLI CCNNNNNNNGG 5 cut(s) 60, 100, 583, 749, 1233
BseMI GCAATG 2 cut(s) 420, 1016
BseMII CTCAG 4 cut(s) 119, 666, 861, 1047
BseNI ACTGG 2 cut(s) 494, 1091
BseXI GCAGC 2 cut(s) 422, 911
BseYI CCCAGC 1 cut(s) 342
Bsh1236I CGCG 2 cut(s) 600, 864
BshFI GGCC 3 cut(s) 64, 84, 1090
BshNI GGYRCC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 834
BsiHKCI CYCGRG 1 cut(s) 1107
BsiSI CCGG 4 cut(s) 559, 584, 716, 736
BslFI GGGAC 2 cut(s) 92, 359
BslI CCNNNNNNNGG 5 cut(s) 60, 100, 583, 749, 1233
BsmAI GTCTC 3 cut(s) 656, 1148, 1214
BsmBI CGTCTC 2 cut(s) 656, 1148
BsmFI GGGAC 2 cut(s) 92, 359
BsmI GAATGC 2 cut(s) 344, 632
BsnI GGCC 3 cut(s) 64, 84, 1090
Bso31I GGTCTC 1 cut(s) 1214
BsoBI CYCGRG 1 cut(s) 1107
Bsp1286I GDGCHC 2 cut(s) 834, 1227
Bsp13I TCCGGA 1 cut(s) 558
Bsp143I GATC 6 cut(s) 43, 589, 1171, 1186, 1191, 1279
Bsp19I CCATGG 1 cut(s) 224
BspACI CCGC 3 cut(s) 598, 862, 1048
BspANI GGCC 3 cut(s) 64, 84, 1090
BspCNI CTCAG 4 cut(s) 118, 667, 862, 1048
BspEI TCCGGA 1 cut(s) 558
BspFNI CGCG 2 cut(s) 600, 864
BspLI GGNNCC 3 cut(s) 50, 85, 754
BspPI GGATC 1 cut(s) 1287
BspT107I GGYRCC 1 cut(s) 48
BspTNI GGTCTC 1 cut(s) 1214
BsrDI GCAATG 2 cut(s) 420, 1016
BsrI ACTGG 2 cut(s) 494, 1091
BssECI CCNNGG 4 cut(s) 65, 161, 224, 1275
BssMI GATC 6 cut(s) 43, 589, 1171, 1186, 1191, 1279
BssNI GRCGYC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 224
Bst2UI CCWGG 3 cut(s) 67, 989, 1276
Bst4CI ACNGT 2 cut(s) 404, 438
BstACI GRCGYC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 602, 611
BstDEI CTNAG 7 cut(s) 105, 675, 870, 979, 1056, 1214, 1256
BstDSI CCRYGG 1 cut(s) 224
BstEII GGTNACC 1 cut(s) 738
BstENI CCTNNNNNAGG 1 cut(s) 1231
BstF5I GGATG 7 cut(s) 157, 178, 241, 654, 731, 896, 1261
BstFNI CGCG 2 cut(s) 600, 864
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 2 cut(s) 51, 866
BstKTI GATC 6 cut(s) 46, 592, 1174, 1189, 1194, 1282
BstMAI GTCTC 3 cut(s) 656, 1148, 1214
BstMBI GATC 6 cut(s) 43, 589, 1171, 1186, 1191, 1279
BstMWI GCNNNNNNNGC 5 cut(s) 439, 606, 610, 829, 1250
BstNI CCWGG 3 cut(s) 67, 989, 1276
BstNSI RCATGY 3 cut(s) 259, 1033, 1169
BstPI GGTNACC 1 cut(s) 738
BstSCI CCNGG 4 cut(s) 65, 734, 987, 1274
BstSFI CTRYAG 2 cut(s) 434, 721
BstUI CGCG 2 cut(s) 600, 864
BstV1I GCAGC 2 cut(s) 422, 911
Bsu36I CCTNAGG 2 cut(s) 870, 1256
BsuRI GGCC 3 cut(s) 64, 84, 1090
BtgI CCRYGG 1 cut(s) 224
BtsCI GGATG 7 cut(s) 157, 178, 241, 654, 731, 896, 1261
Cac8I GCNNGC 2 cut(s) 602, 611
CaiI CAGNNNCTG 1 cut(s) 1247
CfoI GCGC 2 cut(s) 51, 866
Cfr13I GGNCC 4 cut(s) 63, 83, 536, 1013
CseI GACGC 1 cut(s) 638
Csp6I GTAC 3 cut(s) 167, 713, 1007
CviAII CATG 8 cut(s) 225, 256, 641, 903, 971, 1030, 1052, 1166
CviQI GTAC 3 cut(s) 167, 713, 1007
DdeI CTNAG 7 cut(s) 105, 675, 870, 979, 1056, 1214, 1256
DinI GGCGCC 1 cut(s) 50
DpnI GATC 6 cut(s) 45, 591, 1173, 1188, 1193, 1281
DpnII GATC 6 cut(s) 43, 589, 1171, 1186, 1191, 1279
DraI TTTAAA 1 cut(s) 1131
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 1227
Eco31I GGTCTC 1 cut(s) 1214
Eco47I GGWCC 2 cut(s) 536, 1013
Eco57I CTGAAG 2 cut(s) 1113, 1269
Eco81I CCTNAGG 2 cut(s) 870, 1256
Eco88I CYCGRG 1 cut(s) 1107
Eco91I GGTNACC 1 cut(s) 738
EcoNI CCTNNNNNAGG 1 cut(s) 1231
EcoO65I GGTNACC 1 cut(s) 738
EcoRII CCWGG 3 cut(s) 65, 987, 1274
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 1227
EgeI GGCGCC 1 cut(s) 50
EheI GGCGCC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 224
Esp3I CGTCTC 2 cut(s) 656, 1148
FaeI CATG 8 cut(s) 228, 259, 644, 906, 974, 1033, 1055, 1169
FalI AAGNNNNNCTT 2 cut(s) 1197, 1229
FaqI GGGAC 2 cut(s) 92, 359
FatI CATG 8 cut(s) 224, 255, 640, 902, 970, 1029, 1051, 1165
Fnu4HI GCNGC 2 cut(s) 411, 925
FokI GGATG 7 cut(s) 144, 165, 248, 641, 718, 903, 1248
FriOI GRGCYC 1 cut(s) 1227
Fsp4HI GCNGC 2 cut(s) 411, 925
FspBI CTAG 4 cut(s) 183, 780, 881, 1010
GlaI GCGC 2 cut(s) 50, 865
GluI GCNGC 2 cut(s) 411, 925
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 1130
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 3 cut(s) 64, 84, 1090
HapII CCGG 4 cut(s) 559, 584, 716, 736
HgaI GACGC 1 cut(s) 638
HhaI GCGC 2 cut(s) 51, 866
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 8 cut(s) 228, 259, 644, 906, 974, 1033, 1055, 1169
Hin6I GCGC 2 cut(s) 49, 864
HinP1I GCGC 2 cut(s) 49, 864
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 1 cut(s) 205
HpaII CCGG 4 cut(s) 559, 584, 716, 736
HphI GGTGA 2 cut(s) 732, 1196
Hpy166II GTNNAC 3 cut(s) 169, 204, 729
Hpy188I TCNGA 4 cut(s) 162, 386, 966, 1191
Hpy188III TCNNGA 9 cut(s) 111, 394, 559, 827, 948, 1069, 1109, 1147, 1247
Hpy8I GTNNAC 3 cut(s) 169, 204, 729
HpyAV CCTTC 5 cut(s) 308, 759, 1088, 1276, 1284
HpyCH4III ACNGT 2 cut(s) 404, 438
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 927, 1100, 1162, 1204
HpyF10VI GCNNNNNNNGC 5 cut(s) 439, 606, 610, 829, 1250
HpyF3I CTNAG 7 cut(s) 105, 675, 870, 979, 1056, 1214, 1256
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 8 cut(s) 228, 259, 644, 906, 974, 1033, 1055, 1169
HspAI GCGC 2 cut(s) 49, 864
KasI GGCGCC 1 cut(s) 48
Kpn2I TCCGGA 1 cut(s) 558
Kzo9I GATC 6 cut(s) 43, 589, 1171, 1186, 1191, 1279
LmnI GCTCC 1 cut(s) 1249
Lsp1109I GCAGC 2 cut(s) 422, 911
LweI GCATC 5 cut(s) 519, 832, 936, 1149, 1270
MaeI CTAG 4 cut(s) 183, 780, 881, 1010
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 4 cut(s) 16, 503, 738, 905
MalI GATC 6 cut(s) 45, 591, 1173, 1188, 1193, 1281
MboI GATC 6 cut(s) 43, 589, 1171, 1186, 1191, 1279
MhlI GDGCHC 2 cut(s) 834, 1227
MluCI AATT 6 cut(s) 274, 294, 306, 423, 568, 1102
Mly113I GGCGCC 1 cut(s) 49
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 3 cut(s) 115, 247, 1062
MnlI CCTC 9 cut(s) 39, 54, 156, 226, 566, 865, 1065, 1208, 1237
MroI TCCGGA 1 cut(s) 558
MseI TTAA 5 cut(s) 278, 708, 1034, 1119, 1130
MspA1I CMGCKG 1 cut(s) 1181
MspI CCGG 4 cut(s) 559, 584, 716, 736
MspR9I CCNGG 4 cut(s) 67, 736, 989, 1276
Mva1269I GAATGC 2 cut(s) 344, 632
MvaI CCWGG 3 cut(s) 67, 989, 1276
MvnI CGCG 2 cut(s) 600, 864
MwoI GCNNNNNNNGC 5 cut(s) 439, 606, 610, 829, 1250
NarI GGCGCC 1 cut(s) 49
NciI CCSGG 1 cut(s) 736
NcoI CCATGG 1 cut(s) 224
NdeII GATC 6 cut(s) 43, 589, 1171, 1186, 1191, 1279
NlaIII CATG 8 cut(s) 228, 259, 644, 906, 974, 1033, 1055, 1169
NlaIV GGNNCC 3 cut(s) 50, 85, 754
NmuCI GTSAC 3 cut(s) 16, 738, 905
NspI RCATGY 3 cut(s) 259, 1033, 1169
PciI ACATGT 3 cut(s) 255, 1029, 1165
PctI GAATGC 2 cut(s) 344, 632
PflMI CCANNNNNTGG 1 cut(s) 749
PkrI GCNGC 2 cut(s) 412, 926
PleI GAGTC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 16
PscI ACATGT 3 cut(s) 255, 1029, 1165
Psp6I CCWGG 3 cut(s) 65, 987, 1274
PspEI GGTNACC 1 cut(s) 738
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 3 cut(s) 65, 987, 1274
PspN4I GGNNCC 3 cut(s) 50, 85, 754
PspPI GGNCC 4 cut(s) 63, 83, 536, 1013
PstNI CAGNNNCTG 1 cut(s) 1247
PvuII CAGCTG 1 cut(s) 1181
RsaI GTAC 3 cut(s) 168, 714, 1008
RsaNI GTAC 3 cut(s) 167, 713, 1007
SaqAI TTAA 5 cut(s) 278, 708, 1034, 1119, 1130
SatI GCNGC 2 cut(s) 411, 925
Sau3AI GATC 6 cut(s) 43, 589, 1171, 1186, 1191, 1279
Sau96I GGNCC 4 cut(s) 63, 83, 536, 1013
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 4 cut(s) 67, 736, 989, 1276
SduI GDGCHC 2 cut(s) 834, 1227
SfaNI GCATC 5 cut(s) 519, 832, 936, 1149, 1270
SfcI CTRYAG 2 cut(s) 434, 721
SfoI GGCGCC 1 cut(s) 50
SinI GGWCC 2 cut(s) 536, 1013
Sse9I AATT 6 cut(s) 274, 294, 306, 423, 568, 1102
SsiI CCGC 3 cut(s) 598, 862, 1048
SspDI GGCGCC 1 cut(s) 48
SspMI CTAG 4 cut(s) 183, 780, 881, 1010
StyD4I CCNGG 4 cut(s) 65, 734, 987, 1274
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 404, 438
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 848, 1194
TasI AATT 6 cut(s) 274, 294, 306, 423, 568, 1102
Tru1I TTAA 5 cut(s) 278, 708, 1034, 1119, 1130
Tru9I TTAA 5 cut(s) 278, 708, 1034, 1119, 1130
TseFI GTSAC 3 cut(s) 16, 738, 905
TseI GCWGC 2 cut(s) 410, 924
Tsp45I GTSAC 3 cut(s) 16, 738, 905
TspDTI ATGAA 1 cut(s) 625
TspGWI ACGGA 2 cut(s) 35, 499
Van91I CCANNNNNTGG 1 cut(s) 749
VpaK11BI GGWCC 2 cut(s) 536, 1013
XagI CCTNNNNNAGG 1 cut(s) 1231
XapI RAATTY 3 cut(s) 274, 294, 1102
XceI RCATGY 3 cut(s) 259, 1033, 1169
XcmI CCANNNNNNNNNTGG 1 cut(s) 909
XspI CTAG 4 cut(s) 183, 780, 881, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.