Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002302

Physical Location & Seq

Genomic Coordinates Forward (+)

59934122 .. 59937906

Gene Structure 3785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG339300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTAGCTATAAAAGTTGTCAGAAGTATCAAGAAATACCGTGAAGCAGCAATGATAGAAATTGATGTGCTACAGTTGCTTGGAAAGTATGACAGAAATGGCAGTCGTTGTGTTCAAATACGGAACTGGTTTGACTATCGTAACCATATATGTATAGTATTTGAGATGCTTGGACCAAGCTTATATGATTTCCTCCGGAAAAATAATTATCGCCCATTTCCGGTTGATCTTGTCCGCGAGCTTGGCAGGCAACTATTGGAATGTGTAGCATTCATACATGATATGCGTCTCATCCATACTGACTTGAAGCCTGAGAATATACTTTTTGTTTCGCCAGAATATATTAAAGTACCGGACTACAGGTTCACATCCCGGTCGCCAAAAGATGGAACCTGTTATAGAAGGTTGCCAAAGTCTAGTGCTATCAAAGTTATTGATTTTGGTAGCACAGCGTATGAGCATCAAGAGCACAACTATATTGTATCGACAAGGCACTACCGCGCACCTGAGGTCATTCTAGGACTTGGATGGAGTTATCCATGTGACATTTGGAGTATTGGCTGCATCTTGGTAGAGTTGTGTTCGGGAGAAGCCTTGTTTCAGACACATGAGAACTTAGAACACCTGGCTATGATGGAAAGGGTACTAGGTCCATTGCCACAGCACATGTTAAAAAGAGCAGACCGCCATGCTGAGAAGTATGTCAGGAGGGGTAGGTTGGACTGGCCTGAAGGTGCAAATTCTCGGGAAAGTATTAAATCTGTTTTAAAGCTACATCGTCTCCAGAATATAGTGATGCAGCATGTAGATCATTCAGCTGGTGATCTGATCGACCTCCTGCAAGGTCTCCTTAGATTTGAGCCCTCTAATAGGCTAACAGCTCCTGAAGCCCTAAGGCATCCCTTCTTTACCAGGGATCATTACAGAAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

311

Amino Acids

36.54

Weight (kDa)

9.1

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 303	2.5e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 213	9.6e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53570 AT3G53570 AT3G53570 AT3G53570 AT3G53570
fragaria_vesca	FvH4_4g25400 FvH4_4g25400 FvH4_4g25400 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570
malus_domestica	MD12G1136400.v1.1 MD16G1103500.v1.1
prunus_persica	Prupe.1G242500_v2.0.a1 Prupe.1G242500_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1
pyrus_communis	pycom13g09030
rosa_chinensis	RchiOBHm_Chr3g0467621 RchiOBHm_Chr4g0432711
rosa_laevigata	RLG00000006818 RLG00000024484
rosa_multiflora	Rmu_co8522421.1_g000003 Rmu_sc0012180.1_g000012
rosa_roxburghii	Rroxscaffold_5G00374170 Rroxscaffold_6G00413540
rosa_rugosa	Rorug03G0088600 Rorug04G0261900 Rorug04G0262000 Rorug04G0262000
rosa_samantha	Rh3AG136900 Rh3BG158700 Rh3CG158300 Rh3DG159200 Rh4AG316300 Rh4BG324300 Rh4CG339300 Rh4DG319600
rosa_wichuraiana	Rw3G012970 Rw4G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccII	CGCG	2 cut(s)	237, 501
AccIII	TCCGGA	1 cut(s)	195
AciI	CCGC	3 cut(s)	235, 499, 685
AclWI	GGATC	1 cut(s)	924
AcsI	RAATTY	1 cut(s)	739
AcuI	CTGAAG	2 cut(s)	750, 906
AfaI	GTAC	2 cut(s)	351, 645
AfiI	CCNNNNNNNGG	3 cut(s)	220, 386, 870
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	2 cut(s)	116, 307
AjnI	CCWGG	2 cut(s)	624, 911
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	6 cut(s)	8, 180, 241, 772, 818, 881
AluI	AGCT	6 cut(s)	8, 180, 241, 772, 818, 881
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	3 cut(s)	293, 785, 851
AlwI	GGATC	1 cut(s)	924
AlwNI	CAGNNNCTG	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	744
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	1 cut(s)	725
ApeKI	GCWGC	3 cut(s)	47, 561, 799
ApoI	RAATTY	1 cut(s)	739
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	173, 650
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	833
AvaI	CYCGRG	1 cut(s)	744
AvaII	GGWCC	2 cut(s)	173, 650
AxyI	CCTNAGG	2 cut(s)	507, 893
BanII	GRGCYC	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	59, 548, 811
BccI	CCATC	3 cut(s)	380, 522, 628
BciT130I	CCWGG	2 cut(s)	626, 913
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	3 cut(s)	293, 785, 851
BfaI	CTAG	3 cut(s)	417, 518, 647
BfmI	CTRYAG	2 cut(s)	71, 358
BisI	GCNGC	3 cut(s)	48, 562, 800
BlsI	GCNGC	3 cut(s)	49, 563, 801
Bme1390I	CCNGG	3 cut(s)	373, 626, 913
Bme18I	GGWCC	2 cut(s)	173, 650
BmeT110I	CYCGRG	1 cut(s)	744
BmgT120I	GGNCC	2 cut(s)	173, 650
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	3 cut(s)	373, 626, 913
BmsI	GCATC	5 cut(s)	156, 469, 573, 786, 907
BpmI	CTGGAG	1 cut(s)	767
BpuMI	CCSGG	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	851
BsaJI	CCNNGG	1 cut(s)	912
BsaWI	WCCGGW	3 cut(s)	195, 220, 352
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 386, 870
Bse1I	ACTGG	2 cut(s)	131, 728
Bse21I	CCTNAGG	2 cut(s)	507, 893
Bse3DI	GCAATG	2 cut(s)	57, 653
BseAI	TCCGGA	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	626, 913
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	4 cut(s)	291, 368, 533, 898
BseLI	CCNNNNNNNGG	3 cut(s)	220, 386, 870
BseMI	GCAATG	2 cut(s)	57, 653
BseMII	CTCAG	3 cut(s)	303, 498, 684
BseNI	ACTGG	2 cut(s)	131, 728
BseXI	GCAGC	3 cut(s)	59, 548, 811
Bsh1236I	CGCG	2 cut(s)	237, 501
Bsh1285I	CGRYCG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	727
BsiEI	CGRYCG	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	744
BsiSI	CCGG	4 cut(s)	196, 221, 353, 373
BslI	CCNNNNNNNGG	3 cut(s)	220, 386, 870
BsmAI	GTCTC	3 cut(s)	293, 785, 851
BsmBI	CGTCTC	2 cut(s)	293, 785
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	727
Bso31I	GGTCTC	1 cut(s)	851
BsoBI	CYCGRG	1 cut(s)	744
Bsp1286I	GDGCHC	2 cut(s)	471, 864
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	5 cut(s)	226, 808, 823, 828, 916
BspACI	CCGC	3 cut(s)	235, 499, 685
BspANI	GGCC	1 cut(s)	727
BspCNI	CTCAG	3 cut(s)	304, 499, 685
BspEI	TCCGGA	1 cut(s)	195
BspFNI	CGCG	2 cut(s)	237, 501
BspLI	GGNNCC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	924
BspTNI	GGTCTC	1 cut(s)	851
BsrDI	GCAATG	2 cut(s)	57, 653
BsrI	ACTGG	2 cut(s)	131, 728
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	5 cut(s)	226, 808, 823, 828, 916
Bst2UI	CCWGG	2 cut(s)	626, 913
Bst4CI	ACNGT	2 cut(s)	41, 75
BstC8I	GCNNGC	2 cut(s)	239, 248
BstDEI	CTNAG	6 cut(s)	312, 507, 616, 693, 851, 893
BstENI	CCTNNNNNAGG	1 cut(s)	868
BstF5I	GGATG	4 cut(s)	291, 368, 533, 898
BstFNI	CGCG	2 cut(s)	237, 501
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	5 cut(s)	229, 811, 826, 831, 919
BstMAI	GTCTC	3 cut(s)	293, 785, 851
BstMBI	GATC	5 cut(s)	226, 808, 823, 828, 916
BstMCI	CGRYCG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 243, 247, 466, 887
BstNI	CCWGG	2 cut(s)	626, 913
BstNSI	RCATGY	2 cut(s)	670, 806
BstSCI	CCNGG	3 cut(s)	371, 624, 911
BstSFI	CTRYAG	2 cut(s)	71, 358
BstUI	CGCG	2 cut(s)	237, 501
BstV1I	GCAGC	3 cut(s)	59, 548, 811
Bsu36I	CCTNAGG	2 cut(s)	507, 893
BsuRI	GGCC	1 cut(s)	727
BtsCI	GGATG	4 cut(s)	291, 368, 533, 898
Cac8I	GCNNGC	2 cut(s)	239, 248
CaiI	CAGNNNCTG	1 cut(s)	884
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	2 cut(s)	173, 650
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	350, 644
CviAII	CATG	6 cut(s)	278, 540, 608, 667, 689, 803
CviQI	GTAC	2 cut(s)	350, 644
DdeI	CTNAG	6 cut(s)	312, 507, 616, 693, 851, 893
DpnI	GATC	5 cut(s)	228, 810, 825, 830, 918
DpnII	GATC	5 cut(s)	226, 808, 823, 828, 916
DraI	TTTAAA	1 cut(s)	768
Eco24I	GRGCYC	1 cut(s)	864
Eco31I	GGTCTC	1 cut(s)	851
Eco47I	GGWCC	2 cut(s)	173, 650
Eco57I	CTGAAG	2 cut(s)	750, 906
Eco81I	CCTNAGG	2 cut(s)	507, 893
Eco88I	CYCGRG	1 cut(s)	744
EcoNI	CCTNNNNNAGG	1 cut(s)	868
EcoRII	CCWGG	2 cut(s)	624, 911
EcoT38I	GRGCYC	1 cut(s)	864
Esp3I	CGTCTC	2 cut(s)	293, 785
FaeI	CATG	6 cut(s)	281, 543, 611, 670, 692, 806
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FatI	CATG	6 cut(s)	277, 539, 607, 666, 688, 802
Fnu4HI	GCNGC	3 cut(s)	48, 562, 800
FokI	GGATG	4 cut(s)	278, 355, 540, 885
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	3 cut(s)	48, 562, 800
FspBI	CTAG	3 cut(s)	417, 518, 647
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	3 cut(s)	48, 562, 800
GsuI	CTGGAG	1 cut(s)	767
HaeIII	GGCC	1 cut(s)	727
HapII	CCGG	4 cut(s)	196, 221, 353, 373
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	6 cut(s)	281, 543, 611, 670, 692, 806
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	178
HpaII	CCGG	4 cut(s)	196, 221, 353, 373
HphI	GGTGA	1 cut(s)	833
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	3 cut(s)	23, 603, 828
Hpy188III	TCNNGA	8 cut(s)	31, 196, 464, 585, 706, 746, 784, 884
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	4 cut(s)	396, 725, 913, 921
HpyCH4III	ACNGT	2 cut(s)	41, 75
HpyCH4V	TGCA	4 cut(s)	564, 737, 799, 841
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 243, 247, 466, 887
HpyF3I	CTNAG	6 cut(s)	312, 507, 616, 693, 851, 893
Hsp92II	CATG	6 cut(s)	281, 543, 611, 670, 692, 806
HspAI	GCGC	1 cut(s)	501
Kpn2I	TCCGGA	1 cut(s)	195
Kzo9I	GATC	5 cut(s)	226, 808, 823, 828, 916
LmnI	GCTCC	1 cut(s)	886
Lsp1109I	GCAGC	3 cut(s)	59, 548, 811
LweI	GCATC	5 cut(s)	156, 469, 573, 786, 907
MaeI	CTAG	3 cut(s)	417, 518, 647
MaeIII	GTNAC	2 cut(s)	140, 542
MalI	GATC	5 cut(s)	228, 810, 825, 830, 918
MboI	GATC	5 cut(s)	226, 808, 823, 828, 916
MhlI	GDGCHC	2 cut(s)	471, 864
MluCI	AATT	3 cut(s)	60, 205, 739
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	5 cut(s)	203, 502, 702, 845, 874
MroI	TCCGGA	1 cut(s)	195
MseI	TTAA	4 cut(s)	345, 671, 756, 767
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	4 cut(s)	196, 221, 353, 373
MspR9I	CCNGG	3 cut(s)	373, 626, 913
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	2 cut(s)	626, 913
MvnI	CGCG	2 cut(s)	237, 501
MwoI	GCNNNNNNNGC	5 cut(s)	76, 243, 247, 466, 887
NciI	CCSGG	1 cut(s)	373
NdeII	GATC	5 cut(s)	226, 808, 823, 828, 916
NlaIII	CATG	6 cut(s)	281, 543, 611, 670, 692, 806
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	542
NspI	RCATGY	2 cut(s)	670, 806
PciI	ACATGT	1 cut(s)	666
PctI	GAATGC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	3 cut(s)	49, 563, 801
PscI	ACATGT	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	624, 911
PspGI	CCWGG	2 cut(s)	624, 911
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	2 cut(s)	173, 650
PstNI	CAGNNNCTG	1 cut(s)	884
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	2 cut(s)	351, 645
RsaNI	GTAC	2 cut(s)	350, 644
SaqAI	TTAA	4 cut(s)	345, 671, 756, 767
SatI	GCNGC	3 cut(s)	48, 562, 800
Sau3AI	GATC	5 cut(s)	226, 808, 823, 828, 916
Sau96I	GGNCC	2 cut(s)	173, 650
ScrFI	CCNGG	3 cut(s)	373, 626, 913
SduI	GDGCHC	2 cut(s)	471, 864
SfaNI	GCATC	5 cut(s)	156, 469, 573, 786, 907
SfcI	CTRYAG	2 cut(s)	71, 358
SinI	GGWCC	2 cut(s)	173, 650
Sse9I	AATT	3 cut(s)	60, 205, 739
SsiI	CCGC	3 cut(s)	235, 499, 685
SspMI	CTAG	3 cut(s)	417, 518, 647
StyD4I	CCNGG	3 cut(s)	371, 624, 911
TaaI	ACNGT	2 cut(s)	41, 75
TaqI	TCGA	2 cut(s)	485, 831
TasI	AATT	3 cut(s)	60, 205, 739
Tru1I	TTAA	4 cut(s)	345, 671, 756, 767
Tru9I	TTAA	4 cut(s)	345, 671, 756, 767
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	3 cut(s)	47, 561, 799
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	173, 650
XagI	CCTNNNNNAGG	1 cut(s)	868
XapI	RAATTY	1 cut(s)	739
XceI	RCATGY	2 cut(s)	670, 806
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XspI	CTAG	3 cut(s)	417, 518, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.