Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002302

Physical Location & Seq

Genomic Coordinates Reverse (-)

35910138 .. 35913979

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGACGCAGAGGATTATTGAATTTCCTCACCAGAATATGGATAAGCGGCCCAGGAAGAGGCCTCGATTAACATGGGATATGCCTCCTCCTCTTCCTCCTCCCGAGCTGCTCCCAGCAATATACTGCGGGCCGGAGTTTGGAACTGGGCCAATTCCCAATTACACATATACGTCTATGTTTTATGGGGGATTACCTCGGAATGCCTCCCCTCCGTGGAGGCCTGATGATAAAGATGGTCATTATGTGTTTGGGATTGGAGATAATCTAACCCCTCGATATAGGATTCTCAACAAAATGGGAGAGGGGACTTTTGGGCAAGTGTTGGAGTGTTTTGACAATGAAAAGAAAGAATTTGTGGCAATTAAAATTATCCGCTCCATACATAAGTATCGTGAAGCTGCGATGATTGAAATTGATGTCCTACAAAGGCTTGCAAGGCATGATATTGGTGGCACTCGTTGTGTGCAAATTCGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCTAGCTTATACGATTTTCTTCGCAAAAACAGCTACCGTTCATTTCCCATTGATCTTGTTCGGGAGCTTGCCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTACGCCTTATTCATACTGATTTGAAGCCGGAAAATATTCTGCTTGTTTCCCCGACTACGTCAAAGTGCCAGACTATAGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

240

Amino Acids

27.99

Weight (kDa)

8.93

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	94 - 229	2.8e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	96 - 234	1.1e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53570 AT3G53570 AT3G53570 AT3G53570 AT3G53570
fragaria_vesca	FvH4_4g25400 FvH4_4g25400 FvH4_4g25400 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570 FvH4_6g14570
malus_domestica	MD12G1136400.v1.1 MD16G1103500.v1.1
prunus_persica	Prupe.1G242500_v2.0.a1 Prupe.1G242500_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1 Prupe.6G248800_v2.0.a1
pyrus_communis	pycom13g09030
rosa_chinensis	RchiOBHm_Chr3g0467621 RchiOBHm_Chr4g0432711
rosa_laevigata	RLG00000006818 RLG00000024484
rosa_multiflora	Rmu_co8522421.1_g000003 Rmu_sc0012180.1_g000012
rosa_roxburghii	Rroxscaffold_5G00374170 Rroxscaffold_6G00413540
rosa_rugosa	Rorug03G0088600 Rorug04G0261900 Rorug04G0262000 Rorug04G0262000
rosa_samantha	Rh3AG136900 Rh3BG158700 Rh3CG158300 Rh3DG159200 Rh4AG316300 Rh4BG324300 Rh4CG339300 Rh4DG319600
rosa_wichuraiana	Rw3G012970 Rw4G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	378
AciI	CCGC	3 cut(s)	49, 129, 376
AcsI	RAATTY	3 cut(s)	23, 353, 471
AfiI	CCNNNNNNNGG	4 cut(s)	40, 60, 140, 216
AgsI	TTSAA	3 cut(s)	23, 413, 661
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	6 cut(s)	109, 401, 523, 534, 561, 595
AluI	AGCT	6 cut(s)	109, 401, 523, 534, 561, 595
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	5 cut(s)	50, 62, 131, 149, 221
ApeKI	GCWGC	2 cut(s)	109, 401
ApoI	RAATTY	3 cut(s)	23, 353, 471
Asp700I	GAANNNNTTC	1 cut(s)	672
AspS9I	GGNCC	4 cut(s)	51, 131, 149, 527
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	527
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BbvI	GCAGC	2 cut(s)	96, 388
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	55
BfaI	CTAG	2 cut(s)	531, 721
BfmI	CTRYAG	2 cut(s)	618, 711
BisI	GCNGC	3 cut(s)	50, 110, 402
BlsI	GCNGC	3 cut(s)	51, 111, 403
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	527
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	4 cut(s)	51, 131, 149, 527
BmrFI	CCNGG	1 cut(s)	55
BmrI	ACTGGG	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	53, 197, 215
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 60, 140, 216
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	3 cut(s)	53, 197, 215
BseLI	CCNNNNNNNGG	4 cut(s)	40, 60, 140, 216
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	3 cut(s)	78, 81, 90
BseXI	GCAGC	2 cut(s)	96, 388
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	5 cut(s)	52, 64, 133, 151, 223
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	134, 665
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	40, 60, 140, 216
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	5 cut(s)	52, 64, 133, 151, 223
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	580
BspACI	CCGC	3 cut(s)	49, 129, 376
BspANI	GGCC	5 cut(s)	52, 64, 133, 151, 223
BsrBI	CCGCTC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	53, 197, 215
BssMI	GATC	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	2 cut(s)	53, 99
BstC8I	GCNNGC	3 cut(s)	131, 435, 597
BstDSI	CCRYGG	1 cut(s)	215
BstKTI	GATC	1 cut(s)	583
BstMBI	GATC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 558
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	618, 711
BstV1I	GCAGC	2 cut(s)	96, 388
BsuRI	GGCC	5 cut(s)	52, 64, 133, 151, 223
BtgI	CCRYGG	1 cut(s)	215
BtgZI	GCGATG	1 cut(s)	419
Cac8I	GCNNGC	3 cut(s)	131, 435, 597
Cfr13I	GGNCC	4 cut(s)	51, 131, 149, 527
CseI	GACGC	1 cut(s)	16
CviAII	CATG	3 cut(s)	75, 443, 632
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
Eam1104I	CTCTTC	2 cut(s)	53, 99
EarI	CTCTTC	2 cut(s)	53, 99
Eco147I	AGGCCT	2 cut(s)	64, 223
Eco47I	GGWCC	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	633
FaeI	CATG	3 cut(s)	78, 446, 635
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	74, 442, 631
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	3 cut(s)	50, 110, 402
Fsp4HI	GCNGC	3 cut(s)	50, 110, 402
FspBI	CTAG	2 cut(s)	531, 721
GluI	GCNGC	3 cut(s)	50, 110, 402
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	5 cut(s)	52, 64, 133, 151, 223
HapII	CCGG	2 cut(s)	134, 665
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	3 cut(s)	78, 446, 635
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	2 cut(s)	286, 614
HpaII	CCGG	2 cut(s)	134, 665
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	201, 477
Hpy188III	TCNNGA	3 cut(s)	104, 395, 590
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4IV	ACGT	2 cut(s)	173, 695
HpyCH4V	TGCA	3 cut(s)	437, 469, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 558
HpySE526I	ACGT	2 cut(s)	173, 695
Hsp92II	CATG	3 cut(s)	78, 446, 635
Kzo9I	GATC	1 cut(s)	580
LmnI	GCTCC	3 cut(s)	117, 383, 592
Lsp1109I	GCAGC	2 cut(s)	96, 388
MaeI	CTAG	2 cut(s)	531, 721
MaeII	ACGT	2 cut(s)	173, 695
MalI	GATC	1 cut(s)	582
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	1 cut(s)	580
MboII	GAAGA	3 cut(s)	70, 86, 539
MluCI	AATT	9 cut(s)	23, 153, 160, 353, 363, 369, 414, 471, 478
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	2 cut(s)	71, 366
MspI	CCGG	2 cut(s)	134, 665
MspR9I	CCNGG	1 cut(s)	55
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	439, 558
NdeII	GATC	1 cut(s)	580
NlaIII	CATG	3 cut(s)	78, 446, 635
NsiI	ATGCAT	1 cut(s)	633
PceI	AGGCCT	2 cut(s)	64, 223
PctI	GAATGC	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	286
PflFI	GACNNNGTC	1 cut(s)	694
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	51, 111, 403
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	4 cut(s)	51, 131, 149, 527
PsyI	GACNNNGTC	1 cut(s)	694
SaqAI	TTAA	2 cut(s)	71, 366
SatI	GCNGC	3 cut(s)	50, 110, 402
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	4 cut(s)	51, 131, 149, 527
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	55
SfcI	CTRYAG	2 cut(s)	618, 711
SinI	GGWCC	1 cut(s)	527
Sse9I	AATT	9 cut(s)	23, 153, 160, 353, 363, 369, 414, 471, 478
SseBI	AGGCCT	2 cut(s)	64, 223
SsiI	CCGC	3 cut(s)	49, 129, 376
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	2 cut(s)	531, 721
StuI	AGGCCT	2 cut(s)	64, 223
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	566
TaiI	ACGT	2 cut(s)	176, 698
TaqI	TCGA	2 cut(s)	67, 277
TasI	AATT	9 cut(s)	23, 153, 160, 353, 363, 369, 414, 471, 478
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	2 cut(s)	71, 366
Tru9I	TTAA	2 cut(s)	71, 366
TseI	GCWGC	2 cut(s)	109, 401
TspDTI	ATGAA	3 cut(s)	357, 558, 638
TspGWI	ACGGA	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	694
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	3 cut(s)	23, 353, 471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	531, 721
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.