Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012815

Physical Location & Seq

Genomic Coordinates Reverse (-)

55226300 .. 55230903

Gene Structure 4604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGTATCACAGTCTCGGCGTCCACCGCCTCATCTACCGCAGCCGCATGGTGCACTATATCAAAACCGGCCTCATCGATCACGCCCTCCAGGTGTTCGACGAAATGACTCAATCAAATTGCCGCGTGTTCAGCATAGATTACAATCGCTTCATTGGAGTGCTGGTCAAGCACTCGCGTTACGACCTCGCCGAGCATTATTACTACGAAATGGCGCCGCAAGGCTTCTCTCTAACCCCATTCACTTACTCGAGATTTATTTCTGGGTTGTGTAATATCAAGAATTTTACTCTCATTGAGAAGCTTCTTCGAGACATGGAGAGGCTCGGGTGTGTGCCTGACATTTGGGCTTTTAATATATATTTGAATCTTCTCTGCCAAGAAAATAGGATACAGTTGGCTCTGGAAGTGTTTGATAGGATGGTTGAGAAGGGAAGAGAGCCGGATGTTGTATCGTATACTATAGTTATTGATGGGTTGTGTAAAGCTGGAAAGTTTGATAATGCAGTTGAGGTTTGGAATGGTATGATTGGTAAAGGGTTTAGGCCTGATACTATTGCGTGCACCGCGCTTGTTGTTGGTTTGTGTGGAGGTGGAAAGGTAAATTTGGCTTATGACCTTGTAATTGGTGAGATGAAGGGTGGAGTGAAGTTCAATAATTTGATGTATAATGCGCTGATTAGTGGGTTTTGTCGAGCTCGTAGAATTGATAAGGCACAGGCAATTAAGTGGTTTATGAAGAGGAATGGGTGCCAGCCGGATTTGGTGACTCACAATGTGTTGTTGAATTATTGTTGTAATGAGTTCATGTTGGAGGAGGCAGAGAAGTTGATGAAACAAATGGAGAAGAGTGGGATGGAACTCGATGCATATAGTTATAATGGGCTGCTCAAGGGCCTTTGTAAAGATAATAGACCGGAAAAGGCATATTTGTTGATGAGGAACATGATGGAGCCAAAAGGTTTGTGTAATGTTGTTTCATTTAATACAATCATTACAGCATTTTGCAAGGCAGGGCAGACTAGAAGGGCATACAAACTGTTTGAGGAAATGTTTCAAAAAGAAATTTTACCTGATGTGGTTACATTTACCATTCTGATAGAAGCTTTATTAAGAGAAGGTAGTTCAGATATAGCCAAGAAGCTTCTTGATCAGATGACAGGGATGGATCTGTTACCTGATCGTATATTTTACACTACAATAATTGATCACCTATGTAAGAGTGGGAAGATTGCAATGGCTTTTGACGTTTTCAATGATATGTTAGAGAAGGGAATCACCGCTGATGTGGTTTTGTATAATGCACTCATTAGCGGGCTTTGCAGGGCTTCAAGAGTGACTGAAGCCATGCATTTATATGAGGAAATGCAGACTAGAGGATGCTGTCCTGATGAGGTAACTTTCAAAGTGATAATTAGAGGTCTTATAAGAGACAAGAGGCTTTCTGTGGCTTGTGGGGTATGGGATGAGATGATGGAGAAGGGCTTTACTCTGGACAGAGTTCTTTCCCAGACACTGATTAATGCTGTCCATTCAAAAGATGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

515

Amino Acids

58.79

Weight (kDa)

7.76

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	80 - 125	5.8e-07	PPR repeat family
PPR_3	PF13812	100 - 156	2.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	112 - 161	5.2e-16	PPR repeat family
PPR_1	PF12854	143 - 175	8.6e-12	PPR repeat
PPR_2	PF13041	147 - 195	9.8e-13	PPR repeat family
PPR	PF01535	150 - 180	1e-07	PPR repeat
TPR_24	PF23276	198 - 308	5.4e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	213 - 266	1.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	214 - 240	1.8e-06	PPR repeat
PPR_2	PF13041	221 - 266	2.3e-12	PPR repeat family
PPR_1	PF12854	248 - 281	4.9e-07	PPR repeat
PPR_2	PF13041	252 - 301	1.1e-14	PPR repeat family
PPR_long	PF17177	261 - 390	4.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	284 - 315	1.6e-06	PPR repeat
PPR_1	PF12854	320 - 350	1.7e-10	PPR repeat
PPR_3	PF13812	322 - 368	7.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	323 - 370	3.5e-17	PPR repeat family
PPR	PF01535	325 - 353	3.1e-07	PPR repeat
PPR_3	PF13812	345 - 402	1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	354 - 386	6.8e-07	PPR repeat
PPR_3	PF13812	380 - 437	4.5e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	389 - 420	1.9e-07	PPR repeat
PPR_2	PF13041	392 - 430	2.8e-10	PPR repeat family
PPR	PF01535	397 - 425	2.5e-06	PPR repeat
TPR_24	PF23276	405 - 511	7e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	416 - 472	2.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	423 - 456	1.8e-10	PPR repeat
PPR_2	PF13041	428 - 475	8.9e-17	PPR repeat family
PPR	PF01535	430 - 460	2.7e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13040 AT1G13040
fragaria_vesca	FvH4_4g25420
malus_domestica	MD13G1103100.v1.1 MD16G1103300.v1.1
prunus_persica	Prupe.1G242700_v2.0.a1
pyrus_communis	pycom13g09010 pycom16g08810
rosa_chinensis	RchiOBHm_Chr4g0432731
rosa_laevigata	RLG00000006817
rosa_multiflora	Rmu_co8522421.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374190
rosa_rugosa	Rorug04G0262000
rosa_samantha	Rh4AG316500 Rh4BG324500 Rh4CG339500 Rh4DG319800
rosa_wichuraiana	Rw4G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	876, 1424
AccB1I	GGYRCC	2 cut(s)	211, 747
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	3 cut(s)	123, 175, 566
AciI	CCGC	8 cut(s)	25, 37, 43, 121, 215, 564, 1278, 1311
AclWI	GGATC	1 cut(s)	1173
AcsI	RAATTY	3 cut(s)	280, 601, 1062
AcuI	CTGAAG	1 cut(s)	1359
AcyI	GRCGYC	2 cut(s)	18, 212
AdeI	CACNNNGTG	1 cut(s)	775
AgsI	TTSAA	8 cut(s)	364, 652, 784, 1055, 1252, 1329, 1402, 1533
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	5 cut(s)	301, 485, 695, 1103, 1141
AluI	AGCT	5 cut(s)	301, 485, 695, 1103, 1141
Alw21I	GWGCWC	3 cut(s)	54, 563, 697
Alw26I	GTCTC	3 cut(s)	17, 303, 1422
Alw44I	GTGCAC	2 cut(s)	50, 559
AlwI	GGATC	1 cut(s)	1173
AlwNI	CAGNNNCTG	1 cut(s)	1513
Ama87I	CYCGRG	2 cut(s)	247, 323
AoxI	GGCC	3 cut(s)	67, 542, 892
ApaLI	GTGCAC	2 cut(s)	50, 559
ApeKI	GCWGC	2 cut(s)	39, 883
ApoI	RAATTY	3 cut(s)	280, 601, 1062
AseI	ATTAAT	1 cut(s)	1518
Asp700I	GAANNNNTTC	1 cut(s)	1050
AspLEI	GCGC	3 cut(s)	214, 568, 673
AspS9I	GGNCC	1 cut(s)	892
AsuHPI	GGTGA	4 cut(s)	638, 775, 1199, 1267
AvaI	CYCGRG	2 cut(s)	247, 323
BaeGI	GKGCMC	2 cut(s)	54, 563
BanI	GGYRCC	2 cut(s)	211, 747
BanII	GRGCYC	1 cut(s)	697
Bbv12I	GWGCWC	3 cut(s)	54, 563, 697
BbvI	GCAGC	2 cut(s)	51, 870
BccI	CCATC	6 cut(s)	412, 464, 847, 940, 1156, 1465
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	381
BclI	TGATCA	2 cut(s)	1147, 1204
BcoDI	GTCTC	3 cut(s)	17, 303, 1422
BfaI	CTAG	2 cut(s)	1020, 1371
BfmI	CTRYAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	5 cut(s)	40, 43, 121, 215, 884
BlsI	GCNGC	5 cut(s)	41, 44, 122, 216, 885
Bme1390I	CCNGG	1 cut(s)	89
BmeT110I	CYCGRG	2 cut(s)	247, 323
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	3 cut(s)	213, 749, 951
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	853, 1367
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	872
Bsa29I	ATCGAT	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	2 cut(s)	18, 212
BsaWI	WCCGGW	1 cut(s)	913
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bse118I	RCCGGY	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	1239
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	75
BseGI	GGATG	6 cut(s)	423, 448, 858, 1167, 1382, 1468
BseJI	GATNNNNATC	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	1239
BseRI	GAGGAG	1 cut(s)	827
BseSI	GKGCMC	2 cut(s)	54, 563
BseXI	GCAGC	2 cut(s)	51, 870
Bsh1236I	CGCG	3 cut(s)	123, 175, 566
BshFI	GGCC	3 cut(s)	69, 544, 894
BshNI	GGYRCC	2 cut(s)	211, 747
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	54, 563, 697
BsiHKCI	CYCGRG	2 cut(s)	247, 323
BsiSI	CCGG	4 cut(s)	66, 440, 755, 914
BsmAI	GTCTC	3 cut(s)	17, 303, 1422
BsnI	GGCC	3 cut(s)	69, 544, 894
BsoBI	CYCGRG	2 cut(s)	247, 323
Bsp1286I	GDGCHC	3 cut(s)	54, 563, 697
Bsp143I	GATC	5 cut(s)	76, 1147, 1165, 1177, 1204
BspACI	CCGC	8 cut(s)	25, 37, 43, 121, 215, 564, 1278, 1311
BspANI	GGCC	3 cut(s)	69, 544, 894
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	3 cut(s)	123, 175, 566
BspLI	GGNNCC	3 cut(s)	213, 749, 951
BspPI	GGATC	1 cut(s)	1173
BspT107I	GGYRCC	2 cut(s)	211, 747
BsrDI	GCAATG	1 cut(s)	1239
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	5 cut(s)	76, 1147, 1165, 1177, 1204
BssNAI	GTATAC	1 cut(s)	456
BssNI	GRCGYC	2 cut(s)	18, 212
Bst1107I	GTATAC	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	11, 393, 1038
Bst6I	CTCTTC	3 cut(s)	427, 731, 839
BstACI	GRCGYC	2 cut(s)	18, 212
BstC8I	GCNNGC	3 cut(s)	559, 752, 1313
BstF5I	GGATG	6 cut(s)	423, 448, 858, 1167, 1382, 1468
BstFNI	CGCG	3 cut(s)	123, 175, 566
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	3 cut(s)	214, 568, 673
BstKTI	GATC	5 cut(s)	79, 1150, 1168, 1180, 1207
BstMAI	GTCTC	3 cut(s)	17, 303, 1422
BstMBI	GATC	5 cut(s)	76, 1147, 1165, 1177, 1204
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 129, 166, 563, 1317
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	2 cut(s)	54, 563
BstUI	CGCG	3 cut(s)	123, 175, 566
BstV1I	GCAGC	2 cut(s)	51, 870
BstX2I	RGATCY	1 cut(s)	1165
BstYI	RGATCY	1 cut(s)	1165
BstZ17I	GTATAC	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	69, 544, 894
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	6 cut(s)	423, 448, 858, 1167, 1382, 1468
BtsIMutI	CAGTG	1 cut(s)	1511
Cac8I	GCNNGC	3 cut(s)	559, 752, 1313
CaiI	CAGNNNCTG	1 cut(s)	1513
CfoI	GCGC	3 cut(s)	214, 568, 673
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	892
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	1 cut(s)	7
CviAII	CATG	6 cut(s)	46, 313, 805, 943, 1345, 1545
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	5 cut(s)	78, 1149, 1167, 1179, 1206
DpnII	GATC	5 cut(s)	76, 1147, 1165, 1177, 1204
DraIII	CACNNNGTG	1 cut(s)	775
Eam1104I	CTCTTC	3 cut(s)	427, 731, 839
EarI	CTCTTC	3 cut(s)	427, 731, 839
Ecl136II	GAGCTC	1 cut(s)	695
Eco147I	AGGCCT	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	697
Eco53kI	GAGCTC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	1359
Eco88I	CYCGRG	2 cut(s)	247, 323
EcoICRI	GAGCTC	1 cut(s)	695
EcoO109I	RGGNCCY	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	87
EcoT22I	ATGCAT	2 cut(s)	868, 1350
EcoT38I	GRGCYC	1 cut(s)	697
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
FaeI	CATG	6 cut(s)	49, 316, 808, 946, 1348, 1548
FatI	CATG	6 cut(s)	45, 312, 804, 942, 1344, 1544
FauI	CCCGC	1 cut(s)	1304
FbaI	TGATCA	2 cut(s)	1147, 1204
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	5 cut(s)	40, 43, 121, 215, 884
FokI	GGATG	6 cut(s)	430, 455, 865, 1174, 1389, 1475
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	5 cut(s)	40, 43, 121, 215, 884
FspBI	CTAG	2 cut(s)	1020, 1371
GlaI	GCGC	3 cut(s)	213, 567, 672
GluI	GCNGC	5 cut(s)	40, 43, 121, 215, 884
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	69, 544, 894
HapII	CCGG	4 cut(s)	66, 440, 755, 914
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	3 cut(s)	214, 568, 673
Hin1I	GRCGYC	2 cut(s)	18, 212
Hin1II	CATG	6 cut(s)	49, 316, 808, 946, 1348, 1548
Hin6I	GCGC	3 cut(s)	212, 566, 671
HinP1I	GCGC	3 cut(s)	212, 566, 671
HindIII	AAGCTT	3 cut(s)	299, 1101, 1139
HinfI	GANTC	4 cut(s)	106, 364, 766, 1272
HpaII	CCGG	4 cut(s)	66, 440, 755, 914
HphI	GGTGA	4 cut(s)	638, 775, 1199, 1267
Hpy166II	GTNNAC	4 cut(s)	22, 52, 456, 561
Hpy188I	TCNGA	3 cut(s)	1095, 1126, 1152
Hpy188III	TCNNGA	8 cut(s)	249, 277, 308, 401, 1145, 1329, 1385, 1490
Hpy8I	GTNNAC	4 cut(s)	22, 52, 456, 561
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	6 cut(s)	421, 628, 1017, 1109, 1261, 1471
HpyCH4III	ACNGT	3 cut(s)	11, 393, 1038
HpyCH4IV	ACGT	1 cut(s)	1245
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 129, 166, 563, 1317
HpySE526I	ACGT	1 cut(s)	1245
Hsp92I	GRCGYC	2 cut(s)	18, 212
Hsp92II	CATG	6 cut(s)	49, 316, 808, 946, 1348, 1548
HspAI	GCGC	3 cut(s)	212, 566, 671
KasI	GGCGCC	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	1147, 1204
Kzo9I	GATC	5 cut(s)	76, 1147, 1165, 1177, 1204
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	2 cut(s)	51, 870
LweI	GCATC	2 cut(s)	853, 1367
MaeI	CTAG	2 cut(s)	1020, 1371
MaeII	ACGT	1 cut(s)	1245
MaeIII	GTNAC	6 cut(s)	176, 763, 1078, 1170, 1333, 1393
MalI	GATC	5 cut(s)	78, 1149, 1167, 1179, 1206
MboI	GATC	5 cut(s)	76, 1147, 1165, 1177, 1204
MboII	GAAGA	6 cut(s)	296, 359, 444, 748, 856, 1237
MflI	RGATCY	1 cut(s)	1165
MhlI	GDGCHC	3 cut(s)	54, 563, 697
Mly113I	GGCGCC	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	100, 760
MmeI	TCCRAC	1 cut(s)	789
Mph1103I	ATGCAT	2 cut(s)	868, 1350
MroXI	GAANNNNTTC	1 cut(s)	1050
MseI	TTAA	5 cut(s)	351, 723, 981, 1109, 1518
MslI	CAYNNNNRTG	2 cut(s)	155, 1353
MspA1I	CMGCKG	1 cut(s)	1280
MspI	CCGG	4 cut(s)	66, 440, 755, 914
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	3 cut(s)	123, 175, 566
MwoI	GCNNNNNNNGC	5 cut(s)	24, 129, 166, 563, 1317
NarI	GGCGCC	1 cut(s)	212
NdeII	GATC	5 cut(s)	76, 1147, 1165, 1177, 1204
NlaIII	CATG	6 cut(s)	49, 316, 808, 946, 1348, 1548
NlaIV	GGNNCC	3 cut(s)	213, 749, 951
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	763, 1333
NsiI	ATGCAT	2 cut(s)	868, 1350
PaeR7I	CTCGAG	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	1050
PfeI	GAWTC	2 cut(s)	364, 1272
PkrI	GCNGC	5 cut(s)	41, 44, 122, 216, 885
PleI	GAGTC	2 cut(s)	100, 760
PluTI	GGCGCC	1 cut(s)	215
PpsI	GAGTC	2 cut(s)	100, 760
PshBI	ATTAAT	1 cut(s)	1518
PsiI	TTATAA	2 cut(s)	876, 1424
Psp124BI	GAGCTC	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	213, 749, 951
PspPI	GGNCC	1 cut(s)	892
PstNI	CAGNNNCTG	1 cut(s)	1513
PsuI	RGATCY	1 cut(s)	1165
RseI	CAYNNNNRTG	2 cut(s)	155, 1353
SacI	GAGCTC	1 cut(s)	697
SaqAI	TTAA	5 cut(s)	351, 723, 981, 1109, 1518
SatI	GCNGC	5 cut(s)	40, 43, 121, 215, 884
Sau3AI	GATC	5 cut(s)	76, 1147, 1165, 1177, 1204
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	2 cut(s)	100, 760
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	3 cut(s)	54, 563, 697
SfaNI	GCATC	2 cut(s)	853, 1367
SfcI	CTRYAG	1 cut(s)	459
SfoI	GGCGCC	1 cut(s)	213
Sfr274I	CTCGAG	1 cut(s)	247
SlaI	CTCGAG	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	155, 1353
SmlI	CTYRAG	2 cut(s)	247, 887
SmoI	CTYRAG	2 cut(s)	247, 887
SseBI	AGGCCT	1 cut(s)	544
SsiI	CCGC	8 cut(s)	25, 37, 43, 121, 215, 564, 1278, 1311
SspDI	GGCGCC	1 cut(s)	211
SspMI	CTAG	2 cut(s)	1020, 1371
SstI	GAGCTC	1 cut(s)	697
StuI	AGGCCT	1 cut(s)	544
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	11, 393, 1038
TaiI	ACGT	1 cut(s)	1248
TaqI	TCGA	6 cut(s)	75, 96, 248, 307, 691, 861
TauI	GCSGC	3 cut(s)	45, 123, 217
TfiI	GAWTC	2 cut(s)	364, 1272
Tru1I	TTAA	5 cut(s)	351, 723, 981, 1109, 1518
Tru9I	TTAA	5 cut(s)	351, 723, 981, 1109, 1518
TscAI	CASTG	1 cut(s)	1518
TseFI	GTSAC	2 cut(s)	763, 1333
TseI	GCWGC	2 cut(s)	39, 883
Tsp45I	GTSAC	2 cut(s)	763, 1333
TspDTI	ATGAA	6 cut(s)	139, 647, 749, 793, 845, 966
TspRI	CASTG	1 cut(s)	1518
VneI	GTGCAC	2 cut(s)	50, 559
VspI	ATTAAT	1 cut(s)	1518
XapI	RAATTY	3 cut(s)	280, 601, 1062
XhoI	CTCGAG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	1050
XspI	CTAG	2 cut(s)	1020, 1371
Zsp2I	ATGCAT	2 cut(s)	868, 1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.