Prupe.1G242700_v2.0.a1

Pentatricopeptide repeat-containing protein At1g13040

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
25643400 .. 25646808
3409 bp
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UTR
Exon/CDS
Intron
Prupe.1G242700.1

Sequence Viewer

Length: 1698 bp
ATGTATCGCAGTCTCGGCGTTAACCGCCTCATATTCCGCAGTCGCATAGTTTACTACGTGAAAACTGGTCTAATCGATCAAGCTCTCCAAGTGTTCGACGAAATGACCCGCTCCGATTGCCGCGTATTTAGCATTGACTACAATCGCTTCATCGGCGTATTGGTCCGCCATTCGCGTTACGATCTCGCCGAGCACTACTACTACGAAATGGTGCCACAGGGCTTCTCTTTAAGCGCATTTACTTACTCTAGGTTCATTTCTGGTCTGTGCAAGATCAGAAATTTCACTCTCATTGAAAAACTTATTCGAGACATGGATAGGCTTGGGGCTGTGCCTGACATTTGGGCTTTCAATATATATTTGAATCTTCTGTGCCAAGAAAACAGGGCACATTTTGCTCTGGAAGTGTTCCATAGGATGGTTGATAAAGGAAGAGAGCCTGATGTTGTATCATATACTATACTTATTGATGGGTTGTGTAAAGCTAGACAATTTGATAAGGCAGTTGATATTTGGACTAGTATGATTAGGAAAGGGTTCAAGCCCGATAATATTGCGTGTACAGCGCTTGTTGTTGGATTGTGTGATGGTGGGAAGGTTGATTTGGCATATAACCTTGTAATAGGTGAAATGAAGGGTCAAGTCAAGTTTAGTAATTTGATGTATAATACGTTGATTAATGGGTTTTGTCGAGCTGGTAGAATTGATAAGGCACAGGCAATCAAGTCATTTATGAAGAGGAATGGGTGCGAGTCGGATTTGGTTACTCACAATGTGTTATTGAAATATTGTTGTAATGAGTTCATGTTAGAGGAGGCTGAGAAGTTGATGAAGAAAATGGAGAGGAGTGGTATGGAACCTGACGTGTATAGTTACAATCAGCTTCTCAAGGGCCTTTGTCAAGCTAATAGAGCGGATAAGGCATATTTGTTGATGAGGACTAGGATGGAGCCAAAGGGGCTGTGTAATGTTGTGTCATATAATACCATCATCACAGCATTTTGCAGGGCACACCGCACTGGAAGGGCTTATAAACTGTTTGAGGAAATGGGTCAAAAGGGCACCATGCCAGACGTGGTGACGTTCACTATTCTTATAGAAGCTTTTTTAAGAGAAGGTAGTTCAGATATAGCCAATAAGCTTCTTGATCAGATGACAGTTATGGGTCTGTTGCCTGACCGGATATTTTACACTACAATAGTTGATCACCTATGTAAGAGTGGGAAGATTGCAATGGCTTATAGTGTTTTCAGTGATATGTTAGAGAAGGGCATCGCCCCTGATGCTGTTTCATTTAATGCTCTTATTAATGGGCTTTGCAAGGCTTCTAGAGTGAGTGAAGCTATGCATCTCTACGAGGAAATGCAGAATCGAGGATGTTGTCCTGATGAGGTAACTTTTAAATTGATAATTGGAGGTCTCATAAGGGAAAACAAGCTTTCAGTGGCTTGTAGGGTATGGGATCAGATGATGGAGAAGGGCTTTACTCTTGATGGAGCTGTCTCTGAGAGACTGGTTAATGCCATCCATTCAAAAGATGGCATGAAAATGCAAAATGGTCAGCATGGATGCACAATGACCGTTGTTGGGATAATAGCTGACATGCAGAGGCTGCGGATCCATTTTGAGAACGTTAGCGTGAGAACACTATTGATCAAATTTGGGCATGGGTATGGCTTCTTATGTGATATGCAGTGA

Protein Analysis

566

Amino Acids

64.4

Weight (kDa)

8.68

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012815)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13040 AT1G13040
fragaria_vesca FvH4_4g25420
malus_domestica MD13G1103100.v1.1 MD16G1103300.v1.1
prunus_persica Prupe.1G242700_v2.0.a1
pyrus_communis pycom13g09010 pycom16g08810
rosa_chinensis RchiOBHm_Chr4g0432731
rosa_laevigata RLG00000006817
rosa_multiflora Rmu_co8522421.1_g000001
rosa_roxburghii Rroxscaffold_5G00374190
rosa_rugosa Rorug04G0262000
rosa_samantha Rh4AG316500 Rh4BG324500 Rh4CG339500 Rh4DG319800
rosa_wichuraiana Rw4G027530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1032
AccB1I GGYRCC 2 cut(s) 211, 1061
AccB7I CCANNNNNTGG 1 cut(s) 418
AccBSI CCGCTC 2 cut(s) 111, 914
AccII CGCG 2 cut(s) 123, 175
AciI CCGC 8 cut(s) 25, 37, 109, 121, 166, 914, 1015, 1615
AclI AACGTT 1 cut(s) 1632
AclWI GGATC 3 cut(s) 1470, 1612, 1625
AcsI RAATTY 2 cut(s) 280, 1658
AdeI CACNNNGTG 1 cut(s) 775
AfaI GTAC 1 cut(s) 562
AfeI AGCGCT 1 cut(s) 567
AfiI CCNNNNNNNGG 2 cut(s) 418, 1587
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 6 cut(s) 296, 352, 364, 541, 784, 1533
AhlI ACTAGT 1 cut(s) 518
AjiI CACGTC 2 cut(s) 865, 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 5 cut(s) 17, 303, 1424, 1504, 1507
AlwI GGATC 3 cut(s) 1470, 1612, 1625
AlwNI CAGNNNCTG 1 cut(s) 1612
Aor51HI AGCGCT 1 cut(s) 567
AoxI GGCC 1 cut(s) 892
ApeKI GCWGC 1 cut(s) 1612
ApoI RAATTY 2 cut(s) 280, 1658
AseI ATTAAT 2 cut(s) 678, 1308
Asp700I GAANNNNTTC 1 cut(s) 536
AspLEI GCGC 2 cut(s) 236, 568
AspS9I GGNCC 2 cut(s) 163, 892
AsuHPI GGTGA 3 cut(s) 638, 1090, 1199
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 3 cut(s) 391, 1012, 1064
BamHI GGATCC 1 cut(s) 1617
BanI GGYRCC 2 cut(s) 211, 1061
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 1599
BccI CCATC 9 cut(s) 412, 464, 581, 940, 995, 1465, 1487, 1532, 1532
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BclI TGATCA 3 cut(s) 1147, 1204, 1653
BcoDI GTCTC 5 cut(s) 17, 303, 1424, 1504, 1507
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 5 cut(s) 249, 486, 519, 942, 1329
BfoI RGCGCY 1 cut(s) 569
BglI GCCNNNNNGGC 1 cut(s) 958
BisI GCNGC 2 cut(s) 121, 1613
BlsI GCNGC 2 cut(s) 122, 1614
Bme18I GGWCC 1 cut(s) 163
BmgBI CACGTC 2 cut(s) 865, 1075
BmgT120I GGNCC 2 cut(s) 163, 892
BmiI GGNNCC 5 cut(s) 213, 858, 951, 1063, 1619
BmsI GCATC 4 cut(s) 1273, 1281, 1357, 1559
BpuEI CTTGAG 1 cut(s) 872
Bsa29I ATCGAT 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 1424
BsaWI WCCGGW 1 cut(s) 1179
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 1587
Bse1I ACTGG 3 cut(s) 70, 1024, 1518
Bse3DI GCAATG 1 cut(s) 1239
BseCI ATCGAT 1 cut(s) 75
BseGI GGATG 5 cut(s) 423, 951, 1382, 1524, 1574
BseLI CCNNNNNNNGG 2 cut(s) 418, 1587
BseMI GCAATG 1 cut(s) 1239
BseMII CTCAG 2 cut(s) 810, 1497
BseNI ACTGG 3 cut(s) 70, 1024, 1518
BseRI GAGGAG 2 cut(s) 827, 859
BseSI GKGCMC 3 cut(s) 391, 1012, 1064
BseXI GCAGC 1 cut(s) 1599
Bsh1236I CGCG 2 cut(s) 123, 175
BshFI GGCC 1 cut(s) 894
BshNI GGYRCC 2 cut(s) 211, 1061
BshVI ATCGAT 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 1180
BslI CCNNNNNNNGG 2 cut(s) 418, 1587
BsmAI GTCTC 5 cut(s) 17, 303, 1424, 1504, 1507
BsnI GGCC 1 cut(s) 894
Bso31I GGTCTC 1 cut(s) 1424
Bsp1286I GDGCHC 4 cut(s) 195, 391, 1012, 1064
Bsp1407I TGTACA 1 cut(s) 560
Bsp143I GATC 8 cut(s) 76, 181, 273, 1147, 1204, 1462, 1617, 1653
BspACI CCGC 8 cut(s) 25, 37, 109, 121, 166, 914, 1015, 1615
BspANI GGCC 1 cut(s) 894
BspCNI CTCAG 2 cut(s) 811, 1498
BspDI ATCGAT 1 cut(s) 75
BspFNI CGCG 2 cut(s) 123, 175
BspLI GGNNCC 5 cut(s) 213, 858, 951, 1063, 1619
BspPI GGATC 3 cut(s) 1470, 1612, 1625
BspT107I GGYRCC 2 cut(s) 211, 1061
BspTNI GGTCTC 1 cut(s) 1424
BsrBI CCGCTC 2 cut(s) 111, 914
BsrDI GCAATG 1 cut(s) 1239
BsrGI TGTACA 1 cut(s) 560
BsrI ACTGG 3 cut(s) 70, 1024, 1518
BssMI GATC 8 cut(s) 76, 181, 273, 1147, 1204, 1462, 1617, 1653
Bst4CI ACNGT 3 cut(s) 1038, 1159, 1582
Bst6I CTCTTC 2 cut(s) 427, 731
BstAPI GCANNNNNTGC 2 cut(s) 395, 1612
BstAUI TGTACA 1 cut(s) 560
BstBAI YACGTR 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 819, 1506
BstF5I GGATG 5 cut(s) 423, 951, 1382, 1524, 1574
BstFNI CGCG 2 cut(s) 123, 175
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 2 cut(s) 236, 568
BstKTI GATC 8 cut(s) 79, 184, 276, 1150, 1207, 1465, 1620, 1656
BstMAI GTCTC 5 cut(s) 17, 303, 1424, 1504, 1507
BstMBI GATC 8 cut(s) 76, 181, 273, 1147, 1204, 1462, 1617, 1653
BstNSI RCATGY 1 cut(s) 1606
BstSLI GKGCMC 3 cut(s) 391, 1012, 1064
BstUI CGCG 2 cut(s) 123, 175
BstV1I GCAGC 1 cut(s) 1599
BstX2I RGATCY 1 cut(s) 1617
BstYI RGATCY 1 cut(s) 1617
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 894
BsuTUI ATCGAT 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 1258
BtrI CACGTC 2 cut(s) 865, 1075
BtsCI GGATG 5 cut(s) 423, 951, 1382, 1524, 1574
BtsIMutI CAGTG 3 cut(s) 1017, 1258, 1449
CaiI CAGNNNCTG 1 cut(s) 1612
CfoI GCGC 2 cut(s) 236, 568
Cfr13I GGNCC 2 cut(s) 163, 892
ClaI ATCGAT 1 cut(s) 75
Csp6I GTAC 1 cut(s) 561
CviAII CATG 7 cut(s) 313, 805, 1066, 1543, 1565, 1603, 1667
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 2 cut(s) 819, 1506
DpnI GATC 8 cut(s) 78, 183, 275, 1149, 1206, 1464, 1619, 1655
DpnII GATC 8 cut(s) 76, 181, 273, 1147, 1204, 1462, 1617, 1653
DraI TTTAAA 1 cut(s) 1402
DraIII CACNNNGTG 1 cut(s) 775
Eam1104I CTCTTC 2 cut(s) 427, 731
EarI CTCTTC 2 cut(s) 427, 731
EciI GGCGGA 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 1424
Eco47I GGWCC 1 cut(s) 163
Eco47III AGCGCT 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 892
EcoT22I ATGCAT 1 cut(s) 1350
FaeI CATG 7 cut(s) 316, 808, 1069, 1546, 1568, 1606, 1670
FatI CATG 7 cut(s) 312, 804, 1065, 1542, 1564, 1602, 1666
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 3 cut(s) 1147, 1204, 1653
Fnu4HI GCNGC 2 cut(s) 121, 1613
FokI GGATG 5 cut(s) 430, 958, 1389, 1511, 1581
Fsp4HI GCNGC 2 cut(s) 121, 1613
FspBI CTAG 5 cut(s) 249, 486, 519, 942, 1329
GlaI GCGC 2 cut(s) 235, 567
GluI GCNGC 2 cut(s) 121, 1613
HaeII RGCGCY 1 cut(s) 569
HaeIII GGCC 1 cut(s) 894
HapII CCGG 1 cut(s) 1180
HhaI GCGC 2 cut(s) 236, 568
Hin1II CATG 7 cut(s) 316, 808, 1069, 1546, 1568, 1606, 1670
Hin6I GCGC 2 cut(s) 234, 566
HinP1I GCGC 2 cut(s) 234, 566
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 3 cut(s) 1101, 1139, 1436
HinfI GANTC 3 cut(s) 364, 752, 1369
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 1 cut(s) 1180
HphI GGTGA 3 cut(s) 638, 1090, 1199
Hpy166II GTNNAC 4 cut(s) 22, 52, 561, 1086
Hpy188I TCNGA 7 cut(s) 115, 278, 757, 1126, 1152, 1467, 1507
Hpy188III TCNNGA 6 cut(s) 308, 401, 1145, 1329, 1385, 1490
Hpy8I GTNNAC 4 cut(s) 22, 52, 561, 1086
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 6 cut(s) 589, 628, 1017, 1109, 1261, 1471
HpyCH4III ACNGT 3 cut(s) 1038, 1159, 1582
HpyCH4IV ACGT 6 cut(s) 57, 671, 864, 1074, 1082, 1632
HpyF3I CTNAG 2 cut(s) 819, 1506
HpySE526I ACGT 6 cut(s) 57, 671, 864, 1074, 1082, 1632
Hsp92II CATG 7 cut(s) 316, 808, 1069, 1546, 1568, 1606, 1670
HspAI GCGC 2 cut(s) 234, 566
Ksp22I TGATCA 3 cut(s) 1147, 1204, 1653
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 8 cut(s) 76, 181, 273, 1147, 1204, 1462, 1617, 1653
LmnI GCTCC 3 cut(s) 116, 949, 1496
Lsp1109I GCAGC 1 cut(s) 1599
LweI GCATC 4 cut(s) 1273, 1281, 1357, 1559
MaeI CTAG 5 cut(s) 249, 486, 519, 942, 1329
MaeII ACGT 6 cut(s) 57, 671, 864, 1074, 1082, 1632
MaeIII GTNAC 5 cut(s) 176, 763, 872, 1078, 1393
MalI GATC 8 cut(s) 78, 183, 275, 1149, 1206, 1464, 1619, 1655
MbiI CCGCTC 2 cut(s) 111, 914
MboI GATC 8 cut(s) 76, 181, 273, 1147, 1204, 1462, 1617, 1653
MboII GAAGA 5 cut(s) 359, 444, 748, 844, 1237
MflI RGATCY 1 cut(s) 1617
MhlI GDGCHC 4 cut(s) 195, 391, 1012, 1064
MluCI AATT 7 cut(s) 280, 491, 655, 702, 1403, 1410, 1658
MlyI GAGTC 1 cut(s) 761
MmeI TCCRAC 2 cut(s) 556, 735
Mph1103I ATGCAT 1 cut(s) 1350
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 8 cut(s) 21, 230, 678, 1109, 1296, 1308, 1401, 1518
MslI CAYNNNNRTG 2 cut(s) 1547, 1671
MspI CCGG 1 cut(s) 1180
MvnI CGCG 2 cut(s) 123, 175
NdeII GATC 8 cut(s) 76, 181, 273, 1147, 1204, 1462, 1617, 1653
NlaIII CATG 7 cut(s) 316, 808, 1069, 1546, 1568, 1606, 1670
NlaIV GGNNCC 5 cut(s) 213, 858, 951, 1063, 1619
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 1078
NsiI ATGCAT 1 cut(s) 1350
NspI RCATGY 1 cut(s) 1606
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 2 cut(s) 364, 1369
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 2 cut(s) 122, 1614
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
Ppu21I YACGTR 1 cut(s) 58
PshBI ATTAAT 2 cut(s) 678, 1308
PsiI TTATAA 1 cut(s) 1032
Psp1406I AACGTT 1 cut(s) 1632
PspN4I GGNNCC 5 cut(s) 213, 858, 951, 1063, 1619
PspPI GGNCC 2 cut(s) 163, 892
PstNI CAGNNNCTG 1 cut(s) 1612
PsuI RGATCY 1 cut(s) 1617
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
RseI CAYNNNNRTG 2 cut(s) 1547, 1671
SaqAI TTAA 8 cut(s) 21, 230, 678, 1109, 1296, 1308, 1401, 1518
SatI GCNGC 2 cut(s) 121, 1613
Sau3AI GATC 8 cut(s) 76, 181, 273, 1147, 1204, 1462, 1617, 1653
Sau96I GGNCC 2 cut(s) 163, 892
SchI GAGTC 1 cut(s) 761
SduI GDGCHC 4 cut(s) 195, 391, 1012, 1064
SfaNI GCATC 4 cut(s) 1273, 1281, 1357, 1559
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 1547, 1671
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 518
Sse9I AATT 7 cut(s) 280, 491, 655, 702, 1403, 1410, 1658
SsiI CCGC 8 cut(s) 25, 37, 109, 121, 166, 914, 1015, 1615
SspI AATATT 2 cut(s) 553, 788
SspMI CTAG 5 cut(s) 249, 486, 519, 942, 1329
TaaI ACNGT 3 cut(s) 1038, 1159, 1582
TaiI ACGT 6 cut(s) 60, 674, 867, 1077, 1085, 1635
TaqI TCGA 5 cut(s) 75, 96, 307, 691, 1372
TasI AATT 7 cut(s) 280, 491, 655, 702, 1403, 1410, 1658
TatI WGTACW 1 cut(s) 560
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 2 cut(s) 364, 1369
Tru1I TTAA 8 cut(s) 21, 230, 678, 1109, 1296, 1308, 1401, 1518
Tru9I TTAA 8 cut(s) 21, 230, 678, 1109, 1296, 1308, 1401, 1518
TscAI CASTG 3 cut(s) 1024, 1258, 1449
TseFI GTSAC 1 cut(s) 1078
TseI GCWGC 1 cut(s) 1612
Tsp45I GTSAC 1 cut(s) 1078
TspDTI ATGAA 8 cut(s) 139, 244, 647, 749, 793, 845, 1281, 1559
TspRI CASTG 3 cut(s) 1024, 1258, 1449
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 2 cut(s) 678, 1308
XapI RAATTY 2 cut(s) 280, 1658
XbaI TCTAGA 1 cut(s) 1328
XceI RCATGY 1 cut(s) 1606
XcmI CCANNNNNNNNNTGG 2 cut(s) 1072, 1535
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 5 cut(s) 249, 486, 519, 942, 1329
Zsp2I ATGCAT 1 cut(s) 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.