Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012815

Physical Location & Seq

Genomic Coordinates Forward (+)

6018126 .. 6019493

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGACCCACTCGGACTGCCGGGTCTTCAGCGTCGACTACAACCGCTTCATCGGCGTACTCGTCAAGCACTCGCGGTACGATCTCGCCGAGCACTACTACTACGAAATGGTGCCGAAGGGGTTCTCATTGGACCCCTTTACTTACTCAAGGTTCATTTCTGGCTTGTGCAAGATTAGAAATTTCACCCTCATTGAGAAGCTTCTTCGGGACATGGATAGGATTGGGGCATTGCCTGACATCTGGGCTTTCAATATATATTTGAATCTTCTGTGCCAAGAAGACAGGATGGATTTCGCTTTGGAATTGCTTCATAGGATGGTTGACAAAGGAAGAGAGCCGGATGTTGTATCGTATACTATAATTATTGGTGGGTTGTGTAAAGCTGGACAATTTGATATGGCAGTTGATATTTGGAATGGTATGATTAAAAAAGGGCTCAGGCCCGATAACATTGCGTGCACGGCGCTGGTTGTTGGGTTGTGCAAGGGTGGGAAGGTTGATTTGGCTTATGACCTTGTCATTGATGAAATGAAGGGTAGTGTTAATTTTAGTAGTTTGATTTATAATGCGTTGATTAGTGGGTTTTGTCGTGCCAGTAGGATTGATAAGGCACAAGCAATCAAGTCATTTATGAAGAGAAATGGTTGCGAGCCGGATTTGGTTACTCACAATGTGTTGTTAAATTATTCTTGTAATCAGTTCATGTCGGAGGAGGCTGAGAAGTTGATGAAGAAAATGGAGAGGGGTGGTATGGAACCGGATGTGTATAGTTATAATCAGCTTCTCATGGGCCTTTGTAAAGCTAATAGACCGGATAAGGCGTATTTGTTGATGAGAACTAGGATGGAGCCAAAAGGGTTGTGTAATGTTGTGTCGTACAATACCATCATTACAGCATTTTGCAAGGCAAGCCGTACCCGAAGTGCATACAAACTGTTTGAGGAAATGCGTCACAAGGGCACCGTGCCAGATTTGGTTACATTCACTATTCTTATAAATGCCTTTTTAAGAGAAGGTAGTTCAGAGATAGCCAAGAAGCTTCTTGATCAGACAACAGCAATGGGTCTGTTGCTTGACCGTATATTTTACACTACAATAGTTGATCACCTATGCAAGAATGGGAAGATTGAAATGGCTTATAGTGTTTTCAGTGAAATGTTTGAGAAGGGAATCACCCCTGATGTGATTTCATATAATGCTCTCATTAACGGGCTGCTCAAGGCTTCTAAAGTGAGTGACGCTATGCATCTCTATGAGGAAATGCAGACTAGAGGGTGTAGTGCCGACGGGGTAACTTTTAAATTGATAATTGGAGGTCTCATAAGGGAGAATAAGCTTTCAGTCGCTTGTAGGGTATGGGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

456

Amino Acids

51.68

Weight (kDa)

8.49

Isoelectric Point (pI)

27.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	13 - 57	4e-07	PPR repeat family
PPR_2	PF13041	78 - 127	4.5e-14	PPR repeat family
PPR_1	PF12854	109 - 141	5.1e-09	PPR repeat
PPR_2	PF13041	113 - 162	1.2e-14	PPR repeat family
PPR	PF01535	116 - 146	1.8e-07	PPR repeat
PPR_3	PF13812	181 - 229	2.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	186 - 232	3.4e-12	PPR repeat family
PPR_1	PF12854	187 - 211	6.9e-06	PPR repeat
PPR_2	PF13041	221 - 267	1.2e-11	PPR repeat family
PPR_1	PF12854	250 - 279	8e-08	PPR repeat
PPR_1	PF12854	286 - 317	1.7e-10	PPR repeat
PPR_3	PF13812	288 - 335	8.3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	289 - 336	8.4e-18	PPR repeat family
PPR	PF01535	291 - 320	1.4e-07	PPR repeat
TPR_24	PF23276	337 - 453	6.9e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	346 - 403	8.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	354 - 386	9.2e-07	PPR repeat
PPR_2	PF13041	361 - 405	4.3e-15	PPR repeat family
PPR	PF01535	363 - 391	1.4e-06	PPR repeat
PPR_1	PF12854	389 - 422	2.3e-08	PPR repeat
PPR_2	PF13041	393 - 441	3.2e-14	PPR repeat family
PPR	PF01535	396 - 426	3.5e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13040 AT1G13040
fragaria_vesca	FvH4_4g25420
malus_domestica	MD13G1103100.v1.1 MD16G1103300.v1.1
prunus_persica	Prupe.1G242700_v2.0.a1
pyrus_communis	pycom13g09010 pycom16g08810
rosa_chinensis	RchiOBHm_Chr4g0432731
rosa_laevigata	RLG00000006817
rosa_multiflora	Rmu_co8522421.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374190
rosa_rugosa	Rorug04G0262000
rosa_samantha	Rh4AG316500 Rh4BG324500 Rh4CG339500 Rh4DG319800
rosa_wichuraiana	Rw4G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	564, 774, 995
AasI	GACNNNNNNGTC	1 cut(s)	20
AccB1I	GGYRCC	2 cut(s)	109, 959
AccI	GTMKAC	2 cut(s)	33, 353
AccII	CGCG	1 cut(s)	73
AciI	CCGC	2 cut(s)	43, 73
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	10
AdeI	CACNNNGTG	1 cut(s)	673
AfaI	GTAC	4 cut(s)	57, 77, 878, 916
AgsI	TTSAA	3 cut(s)	250, 262, 1130
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	6 cut(s)	199, 383, 781, 803, 1039, 1336
AluI	AGCT	6 cut(s)	199, 383, 781, 803, 1039, 1336
Alw21I	GWGCWC	2 cut(s)	93, 461
Alw26I	GTCTC	1 cut(s)	1322
Alw44I	GTGCAC	1 cut(s)	457
AoxI	GGCC	2 cut(s)	440, 790
ApaLI	GTGCAC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	1213
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	2 cut(s)	119, 306
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	3 cut(s)	130, 441, 790
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	3 cut(s)	175, 1097, 1165
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	2 cut(s)	461, 962
BanI	GGYRCC	2 cut(s)	109, 959
BanII	GRGCYC	1 cut(s)	438
BbsI	GAAGAC	2 cut(s)	16, 285
Bbv12I	GWGCWC	2 cut(s)	93, 461
BbvI	GCAGC	1 cut(s)	1200
BccI	CCATC	4 cut(s)	280, 310, 838, 893
BceAI	ACGGC	2 cut(s)	477, 897
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BclI	TGATCA	2 cut(s)	1045, 1102
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	1322
BfaI	CTAG	2 cut(s)	840, 1269
BfoI	RGCGCY	1 cut(s)	467
BisI	GCNGC	1 cut(s)	1214
BlsI	GCNGC	1 cut(s)	1215
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	130, 441, 790
BmiI	GGNNCC	5 cut(s)	111, 132, 756, 849, 961
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	1255
BpiI	GAAGAC	2 cut(s)	16, 285
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	130, 1202
BpuMI	CCSGG	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	1363
BsaI	GGTCTC	1 cut(s)	1322
BsaWI	WCCGGW	2 cut(s)	757, 811
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	3 cut(s)	227, 450, 1065
BseCI	ATCGAT	1 cut(s)	1363
BseGI	GGATG	5 cut(s)	291, 321, 346, 766, 849
BseMI	GCAATG	3 cut(s)	227, 450, 1065
BseMII	CTCAG	2 cut(s)	451, 708
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	2 cut(s)	461, 962
BseXI	GCAGC	1 cut(s)	1200
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	442, 792
BshNI	GGYRCC	2 cut(s)	109, 959
BshVI	ATCGAT	1 cut(s)	1363
BsiHKAI	GWGCWC	2 cut(s)	93, 461
BsiSI	CCGG	5 cut(s)	19, 338, 653, 758, 812
BslFI	GGGAC	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	1322
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	442, 792
Bso31I	GGTCTC	1 cut(s)	1322
Bsp1286I	GDGCHC	4 cut(s)	93, 438, 461, 962
Bsp143I	GATC	4 cut(s)	79, 1045, 1102, 1360
BspACI	CCGC	2 cut(s)	43, 73
BspANI	GGCC	2 cut(s)	442, 792
BspCNI	CTCAG	2 cut(s)	450, 709
BspDI	ATCGAT	1 cut(s)	1363
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	5 cut(s)	111, 132, 756, 849, 961
BspT107I	GGYRCC	2 cut(s)	109, 959
BspTNI	GGTCTC	1 cut(s)	1322
BsrDI	GCAATG	3 cut(s)	227, 450, 1065
BsrI	ACTGG	1 cut(s)	594
BssMI	GATC	4 cut(s)	79, 1045, 1102, 1360
BssNAI	GTATAC	1 cut(s)	354
Bst1107I	GTATAC	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	936, 964, 1079
Bst6I	CTCTTC	2 cut(s)	325, 629
BstC8I	GCNNGC	3 cut(s)	457, 650, 910
BstDEI	CTNAG	2 cut(s)	437, 717
BstF5I	GGATG	5 cut(s)	291, 321, 346, 766, 849
BstFNI	CGCG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	4 cut(s)	82, 1048, 1105, 1363
BstMAI	GTCTC	1 cut(s)	1322
BstMBI	GATC	4 cut(s)	79, 1045, 1102, 1360
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 461, 909
BstSCI	CCNGG	1 cut(s)	18
BstSLI	GKGCMC	2 cut(s)	461, 962
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	1200
BstV2I	GAAGAC	2 cut(s)	16, 285
BstZ17I	GTATAC	1 cut(s)	354
Bsu15I	ATCGAT	1 cut(s)	1363
BsuRI	GGCC	2 cut(s)	442, 792
BsuTUI	ATCGAT	1 cut(s)	1363
BtsCI	GGATG	5 cut(s)	291, 321, 346, 766, 849
BtsIMutI	CAGTG	1 cut(s)	1156
Cac8I	GCNNGC	3 cut(s)	457, 650, 910
CfoI	GCGC	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	130, 441, 790
ClaI	ATCGAT	1 cut(s)	1363
CseI	GACGC	3 cut(s)	19, 938, 1247
Csp6I	GTAC	4 cut(s)	56, 76, 877, 915
CviAII	CATG	3 cut(s)	211, 703, 787
CviQI	GTAC	4 cut(s)	56, 76, 877, 915
DdeI	CTNAG	2 cut(s)	437, 717
DpnI	GATC	4 cut(s)	81, 1047, 1104, 1362
DpnII	GATC	4 cut(s)	79, 1045, 1102, 1360
DraI	TTTAAA	1 cut(s)	1300
DraIII	CACNNNGTG	1 cut(s)	673
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
Eam1104I	CTCTTC	2 cut(s)	325, 629
EarI	CTCTTC	2 cut(s)	325, 629
Eco24I	GRGCYC	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	1322
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	1248
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	3 cut(s)	214, 706, 790
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	210, 702, 786
FbaI	TGATCA	2 cut(s)	1045, 1102
FblI	GTMKAC	2 cut(s)	33, 353
Fnu4HI	GCNGC	1 cut(s)	1214
FokI	GGATG	5 cut(s)	298, 328, 353, 773, 856
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	1214
FspBI	CTAG	2 cut(s)	840, 1269
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	1 cut(s)	1214
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	442, 792
HapII	CCGG	5 cut(s)	19, 338, 653, 758, 812
HgaI	GACGC	3 cut(s)	19, 938, 1247
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	214, 706, 790
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	2 cut(s)	34, 322
HindII	GTYRAC	2 cut(s)	34, 322
HindIII	AAGCTT	3 cut(s)	197, 1037, 1334
HinfI	GANTC	2 cut(s)	262, 1170
HpaII	CCGG	5 cut(s)	19, 338, 653, 758, 812
HphI	GGTGA	3 cut(s)	175, 1097, 1165
Hpy166II	GTNNAC	4 cut(s)	34, 322, 354, 459
Hpy188I	TCNGA	4 cut(s)	13, 709, 1024, 1050
Hpy188III	TCNNGA	2 cut(s)	206, 1043
Hpy8I	GTNNAC	4 cut(s)	34, 322, 354, 459
Hpy99I	CGWCG	2 cut(s)	35, 1289
HpyAV	CCTTC	5 cut(s)	109, 487, 526, 1007, 1159
HpyCH4III	ACNGT	3 cut(s)	936, 964, 1079
HpyCH4V	TGCA	8 cut(s)	168, 459, 483, 903, 926, 1113, 1246, 1264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 461, 909
HpyF3I	CTNAG	2 cut(s)	437, 717
Hsp92II	CATG	3 cut(s)	214, 706, 790
HspAI	GCGC	1 cut(s)	464
Ksp22I	TGATCA	2 cut(s)	1045, 1102
Kzo9I	GATC	4 cut(s)	79, 1045, 1102, 1360
LmnI	GCTCC	1 cut(s)	847
Lsp1109I	GCAGC	1 cut(s)	1200
LweI	GCATC	1 cut(s)	1255
MaeI	CTAG	2 cut(s)	840, 1269
MaeIII	GTNAC	5 cut(s)	661, 950, 976, 1235, 1291
MalI	GATC	4 cut(s)	81, 1047, 1104, 1362
MboI	GATC	4 cut(s)	79, 1045, 1102, 1360
MboII	GAAGA	8 cut(s)	16, 194, 257, 290, 342, 646, 742, 1135
MhlI	GDGCHC	4 cut(s)	93, 438, 461, 962
MluCI	AATT	8 cut(s)	178, 302, 360, 389, 544, 682, 1301, 1308
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	8 cut(s)	197, 703, 706, 735, 934, 1249, 1265, 1307
Mph1103I	ATGCAT	1 cut(s)	1248
MroXI	GAANNNNTTC	2 cut(s)	119, 306
MseI	TTAA	6 cut(s)	426, 543, 680, 1007, 1206, 1299
MslI	CAYNNNNRTG	1 cut(s)	1251
MspI	CCGG	5 cut(s)	19, 338, 653, 758, 812
MspR9I	CCNGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	51, 461, 909
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	4 cut(s)	79, 1045, 1102, 1360
NlaIII	CATG	3 cut(s)	214, 706, 790
NlaIV	GGNNCC	5 cut(s)	111, 132, 756, 849, 961
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	950, 1235
NsiI	ATGCAT	1 cut(s)	1248
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 84
PdmI	GAANNNNTTC	2 cut(s)	119, 306
PfeI	GAWTC	2 cut(s)	262, 1170
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	1215
PsiI	TTATAA	3 cut(s)	564, 774, 995
PspN4I	GGNNCC	5 cut(s)	111, 132, 756, 849, 961
PspPI	GGNCC	3 cut(s)	130, 441, 790
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	4 cut(s)	57, 77, 878, 916
RsaNI	GTAC	4 cut(s)	56, 76, 877, 915
RseI	CAYNNNNRTG	1 cut(s)	1251
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	6 cut(s)	426, 543, 680, 1007, 1206, 1299
SatI	GCNGC	1 cut(s)	1214
Sau3AI	GATC	4 cut(s)	79, 1045, 1102, 1360
Sau96I	GGNCC	3 cut(s)	130, 441, 790
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	4 cut(s)	93, 438, 461, 962
SfaNI	GCATC	1 cut(s)	1255
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	1251
SmlI	CTYRAG	2 cut(s)	145, 1217
SmoI	CTYRAG	2 cut(s)	145, 1217
Sse9I	AATT	8 cut(s)	178, 302, 360, 389, 544, 682, 1301, 1308
SsiI	CCGC	2 cut(s)	43, 73
SspMI	CTAG	2 cut(s)	840, 1269
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	936, 964, 1079
TaqI	TCGA	2 cut(s)	33, 1363
TasI	AATT	8 cut(s)	178, 302, 360, 389, 544, 682, 1301, 1308
TfiI	GAWTC	2 cut(s)	262, 1170
Tru1I	TTAA	6 cut(s)	426, 543, 680, 1007, 1206, 1299
Tru9I	TTAA	6 cut(s)	426, 543, 680, 1007, 1206, 1299
TscAI	CASTG	1 cut(s)	1156
TseFI	GTSAC	2 cut(s)	950, 1235
TseI	GCWGC	1 cut(s)	1213
Tsp45I	GTSAC	2 cut(s)	950, 1235
TspDTI	ATGAA	9 cut(s)	37, 142, 299, 540, 545, 647, 691, 743, 1179
TspRI	CASTG	1 cut(s)	1156
Tth111I	GACNNNGTC	1 cut(s)	515
VneI	GTGCAC	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	178
XmiI	GTMKAC	2 cut(s)	33, 353
XmnI	GAANNNNTTC	2 cut(s)	119, 306
XspI	CTAG	2 cut(s)	840, 1269
Zsp2I	ATGCAT	1 cut(s)	1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.