Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011055

Physical Location & Seq

Genomic Coordinates Forward (+)

27665041 .. 27671548

Gene Structure 6508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26130.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGCGCTGTGTAAGAGACAGATGGTGTTGGCTGTTGTTGGTTTGGTTTTTGTGTTGTGTTTGGATCTGAGTTTGGTGTGTGCATCTGGGGAGGCTCATGTTCATAGTCACAAATGTAGTCATGGGCATGATCATGATCATGGGCATCAGGGGCAGAGCTTGGTGGGGTCGAAGCTTCTGCCGGAGGAATTGGCCGAGGAGGAGGATATGAGGTTGCATGGATTTGGGTTTCAGCATGACCACGATCACAGTCATGGTCATGAGCATTTTGGTGCTTTGCAGCTCTCGGTTACTGGTCTTTGGATTCATTCATTGGGATGCTCGCTTTTGGTCAGCATGGCTTCCCTCATTTGCCTGATTATCTTGCCAGTAATATTTGTACAGGGGAAACCGTCCAAGGCAGTTGTTGATTCGTTGGCTTTATTTGGGGCTGGCGCTATGTTAGGGGATGCTTTCCTTCATCAATTACCACATGCTTTTGGTGGAGGGCACTCCCACTCACATGACGACCATGTAGGCCATGATCATCATGATCATAGTGAACATGAGCATTCACATGCGCACTCTTTAGAAGATCTTTCTGTAGGAATTGCAGTCCTGGCGGGAATTGTATTGTTTCTTCTGGTAGAAAAGATAGTAAGGTATGTTGAGGAACACTCTGGAGGAACCAATGCTTGGGGTCATGGTCATCATCACCATCATCACAGCAAGAAATTGAAGGATGACAATGATTCTCATGATGACTTGCTGTCAGAATCTTCCACTGGAAAAGATGGGAGGAAGCCAAATGTATCATCTGAAGGAAAAGAGGAAAATTCTCGTAGTGATTCTCAATTGCGTAAGAGAAACACTACCACAGGTGATAGGGATAATAAACAAGATGTGGATGCTGCAGATGACTTGAGTCATGATGCTAAATCTTTAGATGGAGAACCTGCACGAAAACCAAACAATCTTGTGTTTGGTTATCTCAATCTCTTCTCTGACGGTGTTCACAATTTCACGGATGGTATGGCTTTAGGAAGTGCTTTCCTGCTTCATGGTACTGTTGGTGGGTGGTCTAGAACTCTATTCTTGCTTGCACATGAGATTCCTCAGGAGGTTGGTGATTTTGGTATTCTGGTGAGGTCTGGTTTCAGTGTATCTAAAGCACTCTTTTTCAATTTCCTCTCAGCACTTGTGGCCCTAGTTGGAACCGCAATGGCTTTGCTTATCGGACAAGATCCAGGACAGTCATCTTTGATGGAGGGCTTTACAGCCGGTGGATTTATATACATTGCTGTTGCTGGAGTGCTTGCAGAAATGAATAACAATGGCAACTCATCATTGAAAAGCACGGCGATGCAGTTAACTTCGTTGATACTAGGCATGTCAATTGCTCTATGTATTTCACTTTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

468

Amino Acids

50.24

Weight (kDa)

5.85

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	99 - 463	1.5e-57	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68100 AT1G68100
fragaria_vesca	FvH4_4g26130 FvH4_4g26130
malus_domestica	MD13G1015600.v1.1 MD16G1013100.v1.1
prunus_persica	Prupe.1G338200_v2.0.a1
pyrus_communis	pycom13g01320 pycom16g01230
rosa_chinensis	RchiOBHm_Chr4g0433701
rosa_laevigata	RLG00000006737
rosa_multiflora	Rmu_sc0000312.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375140
rosa_rugosa	Rorug04G0270900.1 Rorug04G0271000.1
rosa_samantha	Rh4AG325300 Rh4BG333100 Rh4CG348300 Rh4DG329700
rosa_wichuraiana	Rw4G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	561
Acc36I	ACCTGC	1 cut(s)	943
AccB7I	CCANNNNNTGG	1 cut(s)	675
AciI	CCGC	2 cut(s)	602, 1197
AclWI	GGATC	2 cut(s)	72, 1217
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	814
AcuI	CTGAAG	1 cut(s)	819
AfaI	GTAC	2 cut(s)	381, 1045
AfiI	CCNNNNNNNGG	1 cut(s)	675
AgsI	TTSAA	3 cut(s)	718, 1162, 1330
AhdI	GACNNNNNGTC	1 cut(s)	748
AjnI	CCWGG	2 cut(s)	597, 1225
AjuI	GAANNNNNNNTTGG	2 cut(s)	658, 690
AluBI	AGCT	3 cut(s)	159, 175, 283
AluI	AGCT	3 cut(s)	159, 175, 283
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	72, 1217
AoxI	GGCC	3 cut(s)	192, 517, 1182
ApeKI	GCWGC	2 cut(s)	280, 890
ApoI	RAATTY	1 cut(s)	814
AspLEI	GCGC	3 cut(s)	7, 437, 562
AspS9I	GGNCC	1 cut(s)	1183
AsuHPI	GGTGA	4 cut(s)	686, 872, 1118, 1135
AxyI	CCTNAGG	1 cut(s)	1095
BaeGI	GKGCMC	1 cut(s)	492
BarI	GAAGNNNNNNTAC	2 cut(s)	603, 635
BbvI	GCAGC	2 cut(s)	292, 877
BccI	CCATC	6 cut(s)	16, 705, 767, 920, 1001, 1237
BceAI	ACGGC	1 cut(s)	1353
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	2 cut(s)	599, 1227
BclI	TGATCA	4 cut(s)	130, 136, 523, 532
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	3 cut(s)	1062, 1187, 1364
BfmI	CTRYAG	2 cut(s)	582, 891
BfoI	RGCGCY	2 cut(s)	8, 438
BfuAI	ACCTGC	1 cut(s)	943
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	2 cut(s)	281, 891
BlsI	GCNGC	2 cut(s)	282, 892
Bme1390I	CCNGG	2 cut(s)	599, 1227
BmeRI	GACNNNNNGTC	1 cut(s)	748
BmgT120I	GGNCC	1 cut(s)	1183
BmiI	GGNNCC	2 cut(s)	667, 1195
BmrFI	CCNGG	2 cut(s)	599, 1227
BmsI	GCATC	7 cut(s)	92, 154, 308, 439, 877, 901, 1332
BoxI	GACNNNNGTC	1 cut(s)	903
BplI	GAGNNNNNCTC	2 cut(s)	641, 673
BpmI	CTGGAG	2 cut(s)	681, 1308
BpuEI	CTTGAG	1 cut(s)	922
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	195, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	675
Bse118I	RCCGGY	1 cut(s)	1259
Bse1I	ACTGG	3 cut(s)	298, 368, 769
Bse21I	CCTNAGG	1 cut(s)	1095
Bse3DI	GCAATG	2 cut(s)	1206, 1275
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	599, 1227
BseDI	CCNNGG	2 cut(s)	195, 396
BseGI	GGATG	5 cut(s)	323, 454, 727, 892, 1012
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	675
BseMI	GCAATG	2 cut(s)	1206, 1275
BseMII	CTCAG	3 cut(s)	59, 1109, 1185
BseNI	ACTGG	3 cut(s)	298, 368, 769
BseRI	GAGGAG	2 cut(s)	212, 215
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	2 cut(s)	292, 877
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	3 cut(s)	194, 519, 1184
BsiSI	CCGG	2 cut(s)	182, 1260
BslI	CCNNNNNNNGG	1 cut(s)	675
BsmAI	GTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	3 cut(s)	194, 519, 1184
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	8 cut(s)	64, 130, 136, 244, 523, 532, 574, 1222
BspACI	CCGC	2 cut(s)	602, 1197
BspANI	GGCC	3 cut(s)	194, 519, 1184
BspCNI	CTCAG	3 cut(s)	60, 1108, 1184
BspHI	TCATGA	5 cut(s)	133, 259, 529, 736, 907
BspLI	GGNNCC	2 cut(s)	667, 1195
BspMAI	CTGCAG	1 cut(s)	895
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	2 cut(s)	72, 1217
BsrDI	GCAATG	2 cut(s)	1206, 1275
BsrFI	RCCGGY	1 cut(s)	1259
BsrGI	TGTACA	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	298, 368, 769
BssAI	RCCGGY	1 cut(s)	1259
BssECI	CCNNGG	2 cut(s)	195, 396
BssMI	GATC	8 cut(s)	64, 130, 136, 244, 523, 532, 574, 1222
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	599, 1227
Bst4CI	ACNGT	5 cut(s)	251, 393, 989, 1048, 1233
Bst6I	CTCTTC	1 cut(s)	983
BstAUI	TGTACA	1 cut(s)	379
BstC8I	GCNNGC	4 cut(s)	323, 433, 1080, 1296
BstDEI	CTNAG	3 cut(s)	68, 1095, 1171
BstF5I	GGATG	5 cut(s)	323, 454, 727, 892, 1012
BstH2I	RGCGCY	2 cut(s)	8, 438
BstHHI	GCGC	3 cut(s)	7, 437, 562
BstKTI	GATC	8 cut(s)	67, 133, 139, 247, 526, 535, 577, 1225
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	8 cut(s)	64, 130, 136, 244, 523, 532, 574, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 599, 1181
BstNI	CCWGG	2 cut(s)	599, 1227
BstNSI	RCATGY	3 cut(s)	476, 560, 1372
BstPAI	GACNNNNGTC	1 cut(s)	903
BstSCI	CCNGG	2 cut(s)	597, 1225
BstSFI	CTRYAG	2 cut(s)	582, 891
BstSLI	GKGCMC	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	292, 877
BstX2I	RGATCY	3 cut(s)	64, 574, 1222
BstYI	RGATCY	3 cut(s)	64, 574, 1222
Bsu36I	CCTNAGG	1 cut(s)	1095
BsuRI	GGCC	3 cut(s)	194, 519, 1184
BtgZI	GCGATG	1 cut(s)	1355
BtsCI	GGATG	5 cut(s)	323, 454, 727, 892, 1012
BtsIMutI	CAGTG	2 cut(s)	762, 1144
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	4 cut(s)	323, 433, 1080, 1296
CciI	TCATGA	5 cut(s)	133, 259, 529, 736, 907
CfoI	GCGC	3 cut(s)	7, 437, 562
Cfr10I	RCCGGY	1 cut(s)	1259
Cfr13I	GGNCC	1 cut(s)	1183
Csp6I	GTAC	2 cut(s)	380, 1044
CviQI	GTAC	2 cut(s)	380, 1044
DdeI	CTNAG	3 cut(s)	68, 1095, 1171
DpnI	GATC	8 cut(s)	66, 132, 138, 246, 525, 534, 576, 1224
DpnII	GATC	8 cut(s)	64, 130, 136, 244, 523, 532, 574, 1222
DriI	GACNNNNNGTC	1 cut(s)	748
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	983
Eam1105I	GACNNNNNGTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	983
Eco130I	CCWWGG	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	819
Eco81I	CCTNAGG	1 cut(s)	1095
EcoRII	CCWGG	2 cut(s)	597, 1225
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FauI	CCCGC	1 cut(s)	595
FbaI	TGATCA	4 cut(s)	130, 136, 523, 532
Fnu4HI	GCNGC	2 cut(s)	281, 891
FokI	GGATG	5 cut(s)	330, 461, 734, 899, 1019
Fsp4HI	GCNGC	2 cut(s)	281, 891
FspAI	RTGCGCAY	1 cut(s)	561
FspBI	CTAG	3 cut(s)	1062, 1187, 1364
FspI	TGCGCA	1 cut(s)	561
GlaI	GCGC	3 cut(s)	6, 436, 561
GluI	GCNGC	2 cut(s)	281, 891
GsuI	CTGGAG	2 cut(s)	681, 1308
HaeII	RGCGCY	2 cut(s)	8, 438
HaeIII	GGCC	3 cut(s)	194, 519, 1184
HapII	CCGG	2 cut(s)	182, 1260
HhaI	GCGC	3 cut(s)	7, 437, 562
Hin6I	GCGC	3 cut(s)	5, 435, 560
HinP1I	GCGC	3 cut(s)	5, 435, 560
HincII	GTYRAC	1 cut(s)	1350
HindII	GTYRAC	1 cut(s)	1350
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	7 cut(s)	304, 410, 731, 755, 827, 904, 1090
HpaI	GTTAAC	1 cut(s)	1350
HpaII	CCGG	2 cut(s)	182, 1260
HphI	GGTGA	4 cut(s)	686, 872, 1118, 1135
Hpy166II	GTNNAC	3 cut(s)	542, 994, 1350
Hpy188I	TCNGA	5 cut(s)	69, 754, 799, 985, 1217
Hpy188III	TCNNGA	8 cut(s)	134, 260, 530, 660, 737, 908, 1062, 1097
Hpy8I	GTNNAC	3 cut(s)	542, 994, 1350
HpyAV	CCTTC	3 cut(s)	467, 712, 794
HpyCH4III	ACNGT	5 cut(s)	251, 393, 989, 1048, 1233
HpyCH4V	TGCA	9 cut(s)	83, 217, 280, 593, 893, 938, 1082, 1298, 1345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 599, 1181
HpyF3I	CTNAG	3 cut(s)	68, 1095, 1171
HspAI	GCGC	3 cut(s)	5, 435, 560
Ksp22I	TGATCA	4 cut(s)	130, 136, 523, 532
KspAI	GTTAAC	1 cut(s)	1350
Kzo9I	GATC	8 cut(s)	64, 130, 136, 244, 523, 532, 574, 1222
Lsp1109I	GCAGC	2 cut(s)	292, 877
LweI	GCATC	7 cut(s)	92, 154, 308, 439, 877, 901, 1332
MaeI	CTAG	3 cut(s)	1062, 1187, 1364
MaeIII	GTNAC	2 cut(s)	107, 289
MalI	GATC	8 cut(s)	66, 132, 138, 246, 525, 534, 576, 1224
MboI	GATC	8 cut(s)	64, 130, 136, 244, 523, 532, 574, 1222
MboII	GAAGA	4 cut(s)	584, 611, 750, 970
MfeI	CAATTG	2 cut(s)	833, 1374
MflI	RGATCY	3 cut(s)	64, 574, 1222
MhlI	GDGCHC	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	913
MmeI	TCCRAC	1 cut(s)	1171
MseI	TTAA	1 cut(s)	1349
MspI	CCGG	2 cut(s)	182, 1260
MspR9I	CCNGG	2 cut(s)	599, 1227
MunI	CAATTG	2 cut(s)	833, 1374
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	2 cut(s)	599, 1227
MwoI	GCNNNNNNNGC	3 cut(s)	151, 599, 1181
NdeII	GATC	8 cut(s)	64, 130, 136, 244, 523, 532, 574, 1222
NlaIV	GGNNCC	2 cut(s)	667, 1195
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	107
NsbI	TGCGCA	1 cut(s)	561
NspI	RCATGY	3 cut(s)	476, 560, 1372
PagI	TCATGA	5 cut(s)	133, 259, 529, 736, 907
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	6 cut(s)	304, 410, 731, 755, 827, 1090
PflMI	CCANNNNNTGG	1 cut(s)	675
PfoI	TCCNGGA	1 cut(s)	1225
PkrI	GCNGC	2 cut(s)	282, 892
PleI	GAGTC	1 cut(s)	912
PpsI	GAGTC	1 cut(s)	912
PshAI	GACNNNNGTC	1 cut(s)	903
Psp6I	CCWGG	2 cut(s)	597, 1225
PspGI	CCWGG	2 cut(s)	597, 1225
PspN4I	GGNNCC	2 cut(s)	667, 1195
PspPI	GGNCC	1 cut(s)	1183
PstI	CTGCAG	1 cut(s)	895
PsuI	RGATCY	3 cut(s)	64, 574, 1222
RsaI	GTAC	2 cut(s)	381, 1045
RsaNI	GTAC	2 cut(s)	380, 1044
SaqAI	TTAA	1 cut(s)	1349
SatI	GCNGC	2 cut(s)	281, 891
Sau3AI	GATC	8 cut(s)	64, 130, 136, 244, 523, 532, 574, 1222
Sau96I	GGNCC	1 cut(s)	1183
SchI	GAGTC	1 cut(s)	913
ScrFI	CCNGG	2 cut(s)	599, 1227
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	9 cut(s)	161, 177, 215, 285, 644, 862, 937, 1104, 1130
SfaNI	GCATC	7 cut(s)	92, 154, 308, 439, 877, 901, 1332
SfcI	CTRYAG	2 cut(s)	582, 891
SmlI	CTYRAG	1 cut(s)	901
SmoI	CTYRAG	1 cut(s)	901
SsiI	CCGC	2 cut(s)	602, 1197
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	3 cut(s)	1062, 1187, 1364
StyD4I	CCNGG	2 cut(s)	597, 1225
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	5 cut(s)	251, 393, 989, 1048, 1233
TaqI	TCGA	1 cut(s)	170
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	6 cut(s)	304, 410, 731, 755, 827, 1090
Tru1I	TTAA	1 cut(s)	1349
Tru9I	TTAA	1 cut(s)	1349
TscAI	CASTG	2 cut(s)	769, 1144
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	2 cut(s)	280, 890
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	6 cut(s)	92, 296, 300, 449, 1028, 1319
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	2 cut(s)	769, 1144
Van91I	CCANNNNNTGG	1 cut(s)	675
XapI	RAATTY	1 cut(s)	814
XbaI	TCTAGA	1 cut(s)	1061
XceI	RCATGY	3 cut(s)	476, 560, 1372
XspI	CTAG	3 cut(s)	1062, 1187, 1364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.