Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011055

Physical Location & Seq

Genomic Coordinates Forward (+)

56017653 .. 56022160

Gene Structure 4508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGAGTTGTGTAAGAGACGTATGTTGTCTGTTGTTGCTGCTTTGGTTCTTGGGCTGTGTTTGGATCTGAGCTTGGTTTGTGCATCTGGGGAGGCTCATGTTCACACCCACCACTGTAATCATGGCCATAATGACCATGACCATCATGGCCATGGTCACCAAGGCCAGAGCTTGGTGGGGTCGATGCTTCTTCCGGAGGAATTGGCGGAGGAGGAGGATATGAAGTTGTATGGATTTGGGTTTCAACATGACCATGATCACAGTCATGGCCATGAGCAGTTTGGTGCTTTGCAGCTCTCGGTGACTGGTCTTTGGATTCATTCATTGGGATGCTCCTTTTTGGTCAGCATGGCTTCCCTCATTTGCCTGATTATCTTACCAGTAATATTCGTACAGGGGAAACCATCCAAGGCAGTTGTTGATTCGTTGGCTTTATTTGGGGCTGGAGCTATGTTAGGGGATGCTTTCCTTCATCAATTACCACATGCTTTTGGTGGAGGGCACTCACATGATGACCATGTAGGCCACGATCATCACGATCATAGTGAACATGAGCATTCACATGCTCATTCTTTGGAAGATCTTTCTGTAGGAATTGCTGTCCTGGCGGGAATTGTATTGTTTCTTTTGGTAGAAAAGATGGTGAGGTATGTCGAGGAACACTCTGGAGGAACTAATGCATTGGGTCATGGTCATCATCACCATCATCACAGCAAGAAATTGAAGGATGACAACGATTCTCATGATGACTTGACATCAGAATCTTCCGCTGGAAAAGATGGAAGGAAGCCAAATGTGTCATCTGAAGGAAAAGTGGAAAGTGAAGTTTTAAATGATTCTTTGAAGGAAAATTCTCATCATGATTCTCAATTGCGTAAGAGAAACACTGCCACAGGTGATAGGGATAATAAACAAGATGTTCATGCTGCAGATGACTTGAGTCATGATGCTAAATTGTTAGATGTAGAACCTACACGATCACCCAACAATCTTGTGTTTGGTTATCTTAATCTCTTCTCTGACGGTGTTCACAATTTCACAGATGGGATGGCTTTAGGAAGTGCTTTCCTGCTTCATGGTACTGTTGGTGGGTGGTCTAGAACTCTATTCTTGCTGGCGCATGAGATTCCTCAAGAGGTTGGTGATTTTGGTATTCTGGTGAGGTCTGGTTTCAGTGTATCTAAAGCTCTCTTTTTCAATTTCCTCTCAGCACTAGTGGCCCTCGTTGGAACTGCAATGGCTCTGCTTGTGGGACAAGATCCGGGACAGTCATCTTTGATGGAGGGTTTTACAGCTGGTGGATTTATATACATTGCGGTTGCTGGAGTGCTTGCAGAAATGAATAACAATGGCAACTCATCATTGAAAAGCACAGCGATGCAATTGATTTCGTTGATACTCGGCATGTCAGTTGCTCTATGTATTTCACTTTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

479

Amino Acids

51.6

Weight (kDa)

5.78

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	103 - 475	6.6e-56	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68100 AT1G68100
fragaria_vesca	FvH4_4g26130 FvH4_4g26130
malus_domestica	MD13G1015600.v1.1 MD16G1013100.v1.1
prunus_persica	Prupe.1G338200_v2.0.a1
pyrus_communis	pycom13g01320 pycom16g01230
rosa_chinensis	RchiOBHm_Chr4g0433701
rosa_laevigata	RLG00000006737
rosa_multiflora	Rmu_sc0000312.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375140
rosa_rugosa	Rorug04G0270900.1 Rorug04G0271000.1
rosa_samantha	Rh4AG325300 Rh4BG333100 Rh4CG348300 Rh4DG329700
rosa_wichuraiana	Rw4G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	4 cut(s)	206, 608, 768, 1316
AclWI	GGATC	2 cut(s)	72, 1253
AcoI	YGGCCR	3 cut(s)	124, 148, 268
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	1 cut(s)	825
AfaI	GTAC	2 cut(s)	393, 1081
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	5 cut(s)	245, 724, 844, 1198, 1366
AhlI	ACTAGT	1 cut(s)	1213
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	6 cut(s)	72, 171, 295, 449, 1187, 1295
AluI	AGCT	6 cut(s)	72, 171, 295, 449, 1187, 1295
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	72, 1253
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	6 cut(s)	124, 148, 163, 268, 523, 1218
ApeKI	GCWGC	3 cut(s)	38, 292, 926
ApoI	RAATTY	1 cut(s)	850
AspLEI	GCGC	1 cut(s)	1120
AspS9I	GGNCC	1 cut(s)	1219
AsuC2I	CCSGG	1 cut(s)	1263
AsuHPI	GGTGA	8 cut(s)	149, 313, 655, 692, 908, 972, 1154, 1171
BaeGI	GKGCMC	1 cut(s)	504
BalI	TGGCCA	3 cut(s)	126, 150, 270
BbvI	GCAGC	3 cut(s)	25, 304, 913
BccI	CCATC	8 cut(s)	150, 412, 634, 711, 773, 1037, 1042, 1273
BciT130I	CCWGG	1 cut(s)	605
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	1263
BcoDI	GTCTC	1 cut(s)	10
BcuI	ACTAGT	1 cut(s)	1213
BfaI	CTAG	2 cut(s)	1098, 1214
BfmI	CTRYAG	2 cut(s)	588, 927
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	3 cut(s)	39, 293, 927
BlsI	GCNGC	3 cut(s)	40, 294, 928
Bme1390I	CCNGG	2 cut(s)	605, 1263
BmgT120I	GGNCC	1 cut(s)	1219
BmrFI	CCNGG	2 cut(s)	605, 1263
BmsI	GCATC	6 cut(s)	92, 174, 320, 451, 937, 1368
BoxI	GACNNNNGTC	1 cut(s)	939
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpmI	CTGGAG	3 cut(s)	465, 687, 1344
BpuEI	CTTGAG	2 cut(s)	958, 1116
BpuMI	CCSGG	1 cut(s)	1263
BsaJI	CCNNGG	3 cut(s)	151, 160, 408
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	310, 380
Bse3DI	GCAATG	2 cut(s)	1242, 1311
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	3 cut(s)	151, 160, 408
BseGI	GGATG	5 cut(s)	335, 404, 466, 733, 1053
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	2 cut(s)	1242, 1311
BseMII	CTCAG	2 cut(s)	59, 1221
BseNI	ACTGG	2 cut(s)	310, 380
BseRI	GAGGAG	2 cut(s)	224, 227
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	3 cut(s)	25, 304, 913
BshFI	GGCC	6 cut(s)	126, 150, 165, 270, 525, 1220
BsiSI	CCGG	2 cut(s)	194, 1262
BslFI	GGGAC	2 cut(s)	1266, 1278
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	10
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	2 cut(s)	1266, 1278
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	6 cut(s)	126, 150, 165, 270, 525, 1220
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	7 cut(s)	64, 256, 529, 538, 580, 977, 1258
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	4 cut(s)	206, 608, 768, 1316
BspANI	GGCC	6 cut(s)	126, 150, 165, 270, 525, 1220
BspCNI	CTCAG	2 cut(s)	60, 1220
BspEI	TCCGGA	1 cut(s)	193
BspHI	TCATGA	3 cut(s)	742, 859, 943
BspMAI	CTGCAG	1 cut(s)	931
BspPI	GGATC	2 cut(s)	72, 1253
BsrDI	GCAATG	2 cut(s)	1242, 1311
BsrI	ACTGG	2 cut(s)	310, 380
BssECI	CCNNGG	3 cut(s)	151, 160, 408
BssMI	GATC	7 cut(s)	64, 256, 529, 538, 580, 977, 1258
BssT1I	CCWWGG	3 cut(s)	151, 160, 408
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	5 cut(s)	116, 263, 1025, 1084, 1269
Bst6I	CTCTTC	1 cut(s)	1019
BstC8I	GCNNGC	2 cut(s)	1116, 1332
BstDEI	CTNAG	2 cut(s)	68, 1207
BstDSI	CCRYGG	1 cut(s)	151
BstEII	GGTNACC	1 cut(s)	155
BstF5I	GGATG	5 cut(s)	335, 404, 466, 733, 1053
BstHHI	GCGC	1 cut(s)	1120
BstKTI	GATC	7 cut(s)	67, 259, 532, 541, 583, 980, 1261
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	7 cut(s)	64, 256, 529, 538, 580, 977, 1258
BstMWI	GCNNNNNNNGC	2 cut(s)	605, 1217
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	3 cut(s)	488, 566, 1408
BstPAI	GACNNNNGTC	1 cut(s)	939
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	603, 1261
BstSFI	CTRYAG	2 cut(s)	588, 927
BstSLI	GKGCMC	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	25, 304, 913
BstX2I	RGATCY	3 cut(s)	64, 580, 1258
BstYI	RGATCY	3 cut(s)	64, 580, 1258
BsuRI	GGCC	6 cut(s)	126, 150, 165, 270, 525, 1220
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	1391
BtsCI	GGATG	5 cut(s)	335, 404, 466, 733, 1053
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	3 cut(s)	112, 885, 1180
Cac8I	GCNNGC	2 cut(s)	1116, 1332
CciI	TCATGA	3 cut(s)	742, 859, 943
CfoI	GCGC	1 cut(s)	1120
Cfr13I	GGNCC	1 cut(s)	1219
Csp6I	GTAC	2 cut(s)	392, 1080
CviQI	GTAC	2 cut(s)	392, 1080
DdeI	CTNAG	2 cut(s)	68, 1207
DpnI	GATC	7 cut(s)	66, 258, 531, 540, 582, 979, 1260
DpnII	GATC	7 cut(s)	64, 256, 529, 538, 580, 977, 1258
DraI	TTTAAA	1 cut(s)	831
EaeI	YGGCCR	3 cut(s)	124, 148, 268
Eam1104I	CTCTTC	1 cut(s)	1019
EarI	CTCTTC	1 cut(s)	1019
EciI	GGCGGA	1 cut(s)	221
Eco130I	CCWWGG	3 cut(s)	151, 160, 408
Eco57I	CTGAAG	1 cut(s)	825
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	603
EcoT14I	CCWWGG	3 cut(s)	151, 160, 408
EcoT22I	ATGCAT	1 cut(s)	682
ErhI	CCWWGG	3 cut(s)	151, 160, 408
Esp3I	CGTCTC	1 cut(s)	10
FaqI	GGGAC	2 cut(s)	1266, 1278
FauI	CCCGC	1 cut(s)	601
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	39, 293, 927
FokI	GGATG	5 cut(s)	342, 391, 473, 740, 1060
Fsp4HI	GCNGC	3 cut(s)	39, 293, 927
FspBI	CTAG	2 cut(s)	1098, 1214
GlaI	GCGC	1 cut(s)	1119
GluI	GCNGC	3 cut(s)	39, 293, 927
GsuI	CTGGAG	3 cut(s)	465, 687, 1344
HaeIII	GGCC	6 cut(s)	126, 150, 165, 270, 525, 1220
HapII	CCGG	2 cut(s)	194, 1262
HhaI	GCGC	1 cut(s)	1120
Hin6I	GCGC	1 cut(s)	1118
HinP1I	GCGC	1 cut(s)	1118
HinfI	GANTC	8 cut(s)	316, 422, 737, 761, 836, 863, 940, 1126
HpaII	CCGG	2 cut(s)	194, 1262
HphI	GGTGA	8 cut(s)	149, 313, 655, 692, 908, 972, 1154, 1171
Hpy166II	GTNNAC	3 cut(s)	103, 548, 1030
Hpy188I	TCNGA	4 cut(s)	69, 760, 805, 1021
Hpy188III	TCNNGA	8 cut(s)	194, 536, 666, 743, 860, 944, 1098, 1133
Hpy8I	GTNNAC	3 cut(s)	103, 548, 1030
HpyAV	CCTTC	5 cut(s)	479, 718, 777, 800, 838
HpyCH4III	ACNGT	5 cut(s)	116, 263, 1025, 1084, 1269
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	7 cut(s)	83, 292, 680, 929, 1235, 1334, 1381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	605, 1217
HpyF3I	CTNAG	2 cut(s)	68, 1207
HpySE526I	ACGT	1 cut(s)	19
HspAI	GCGC	1 cut(s)	1118
Kpn2I	TCCGGA	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	7 cut(s)	64, 256, 529, 538, 580, 977, 1258
LmnI	GCTCC	2 cut(s)	338, 446
Lsp1109I	GCAGC	3 cut(s)	25, 304, 913
LweI	GCATC	6 cut(s)	92, 174, 320, 451, 937, 1368
MaeI	CTAG	2 cut(s)	1098, 1214
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	155, 301
MalI	GATC	7 cut(s)	66, 258, 531, 540, 582, 979, 1260
MboI	GATC	7 cut(s)	64, 256, 529, 538, 580, 977, 1258
MboII	GAAGA	4 cut(s)	182, 590, 756, 1006
MfeI	CAATTG	2 cut(s)	869, 1382
MflI	RGATCY	3 cut(s)	64, 580, 1258
MhlI	GDGCHC	1 cut(s)	504
MlsI	TGGCCA	3 cut(s)	126, 150, 270
MluNI	TGGCCA	3 cut(s)	126, 150, 270
MlyI	GAGTC	1 cut(s)	949
MmeI	TCCRAC	1 cut(s)	1207
Mox20I	TGGCCA	3 cut(s)	126, 150, 270
Mph1103I	ATGCAT	1 cut(s)	682
MroI	TCCGGA	1 cut(s)	193
MscI	TGGCCA	3 cut(s)	126, 150, 270
MseI	TTAA	2 cut(s)	830, 1008
MslI	CAYNNNNRTG	8 cut(s)	150, 252, 264, 270, 328, 507, 561, 1376
Msp20I	TGGCCA	3 cut(s)	126, 150, 270
MspA1I	CMGCKG	2 cut(s)	770, 1295
MspI	CCGG	2 cut(s)	194, 1262
MspR9I	CCNGG	2 cut(s)	605, 1263
MunI	CAATTG	2 cut(s)	869, 1382
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	2 cut(s)	605, 1217
NciI	CCSGG	1 cut(s)	1263
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	7 cut(s)	64, 256, 529, 538, 580, 977, 1258
NmeAIII	GCCGAG	1 cut(s)	1380
NmuCI	GTSAC	2 cut(s)	155, 301
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	3 cut(s)	488, 566, 1408
PagI	TCATGA	3 cut(s)	742, 859, 943
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	7 cut(s)	316, 422, 737, 761, 836, 863, 1126
PflMI	CCANNNNNTGG	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	1261
PkrI	GCNGC	3 cut(s)	40, 294, 928
PleI	GAGTC	1 cut(s)	948
PpsI	GAGTC	1 cut(s)	948
PshAI	GACNNNNGTC	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	603
PspEI	GGTNACC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	1219
PstI	CTGCAG	1 cut(s)	931
PsuI	RGATCY	3 cut(s)	64, 580, 1258
PvuII	CAGCTG	1 cut(s)	1295
RsaI	GTAC	2 cut(s)	393, 1081
RsaNI	GTAC	2 cut(s)	392, 1080
RseI	CAYNNNNRTG	8 cut(s)	150, 252, 264, 270, 328, 507, 561, 1376
SaqAI	TTAA	2 cut(s)	830, 1008
SatI	GCNGC	3 cut(s)	39, 293, 927
Sau3AI	GATC	7 cut(s)	64, 256, 529, 538, 580, 977, 1258
Sau96I	GGNCC	1 cut(s)	1219
SchI	GAGTC	1 cut(s)	949
ScrFI	CCNGG	2 cut(s)	605, 1263
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	6 cut(s)	92, 174, 320, 451, 937, 1368
SfcI	CTRYAG	2 cut(s)	588, 927
SmiMI	CAYNNNNRTG	8 cut(s)	150, 252, 264, 270, 328, 507, 561, 1376
SmlI	CTYRAG	2 cut(s)	937, 1131
SmoI	CTYRAG	2 cut(s)	937, 1131
SpeI	ACTAGT	1 cut(s)	1213
SsiI	CCGC	4 cut(s)	206, 608, 768, 1316
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	2 cut(s)	1098, 1214
StyD4I	CCNGG	2 cut(s)	603, 1261
StyI	CCWWGG	3 cut(s)	151, 160, 408
TaaI	ACNGT	5 cut(s)	116, 263, 1025, 1084, 1269
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	182, 654
TfiI	GAWTC	7 cut(s)	316, 422, 737, 761, 836, 863, 1126
Tru1I	TTAA	2 cut(s)	830, 1008
Tru9I	TTAA	2 cut(s)	830, 1008
TscAI	CASTG	3 cut(s)	119, 892, 1180
TseFI	GTSAC	2 cut(s)	155, 301
TseI	GCWGC	3 cut(s)	38, 292, 926
Tsp45I	GTSAC	2 cut(s)	155, 301
TspDTI	ATGAA	7 cut(s)	236, 308, 312, 461, 911, 1064, 1355
TspRI	CASTG	3 cut(s)	119, 892, 1180
Van91I	CCANNNNNTGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	850
XbaI	TCTAGA	1 cut(s)	1097
XceI	RCATGY	3 cut(s)	488, 566, 1408
XcmI	CCANNNNNNNNNTGG	4 cut(s)	119, 143, 149, 278
XspI	CTAG	2 cut(s)	1098, 1214
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.