Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011055

Physical Location & Seq

Genomic Coordinates Reverse (-)

764394 .. 767968

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01230.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGCGCTTTGTAAGAAAGGTTTGGTCTTGGTTGCTCTTGCTTTGGTTGTTGGGCTCTGTTCGGATCTGAGTTTTGTTTCTGGGTTCCTTGCATCTGCCGCTCCCGAGCCTCACACTCACCACCAGGGTTGCAGTCATGCGCACCACGACCACCATGACCACGGCCACAGTCACGGCAGCCTCCACGGCCACGACGAGGAGGATGATAGATTACTGCCGAGATCGAAGCTTCCCGAGGAATTGGCCGAGGAAGAGGACATGAAGTTGTACGGATTTGAATTTCACGATCATGGTCACGATCACGAGCATTTTGGTGCTCTGCAGCTCTCAGTTGCTGGTCTCTGGATTCATTCCTTGGGGTGCTCGCTTTTGGTGAGCATGGCCTCCCTTATCTGCCTGATTATCTTGCCAGTGATGTTCGTACAGGGGAAACCATCCAAGGCAGTTGTTGATTCGTTGGCTGTATTTGGGGCTGGAGCAATGTTGGGGGATGCTTTTCTTCATCAATTACCGCATGCTTTTGGAGGAGGGCACTCTGACTCACATGACCACCATGAAGGCCATTCCCATTCTCATTCGCATGAGCATTCACATTCGCATTCTTTGGAAGATCTTTCAGTAGGATTATCTGTCCTGGCGGGAATTGTATTATTTCTTCTGGTAGAAAAGACAGTGAGGTATGTTGAGGAAAACTCTGGAGGAACTAATTCATGGAGTCATGGTCATCATCACCATCATCATAAGAACAGCAAGAAACTGAAGGATGATAATGATTCTCACGATGACTTGCATTCAGAATCTTCCAATGGAAAAGATGGAAGGAAGCTGAAGACATCTGACGGAGAAGTGGCACCTGATGGTTTAAATGATTCTTTGATCGAAAATACTCAACAGGACTCTCATATTCGTAAGAGAAACATTAGGACTGGTGGGAGTGATGATAAACAAGATGTAGATCCTGCAAATGATTCCACTTCTGAGGCCAAGTCCGCAAAAGGGGAAACTACTCAATCACCCTCAAATCTTGTGTTTGGCTATCTCAATCTCTTCTCGGATGGTGTTCACAATTTTACAGATGGGATGGCTTTAGGGAGTGCGTTCCTGCTTCATGGATCCGTTGGTGGGTGGTCTAGAACTCTATTCTTGCTTGCGCATGAGATTCCCCAAGAGGTCGGTGATTTTGGTATTCTCGTAAGGTCTGGTTTCAGCGTATCTAAAGCTCTGCTCTTCAACTTTCTCTCAGCACTTGTGGCACTACTTGGAACCGCAATGGGCTTTACAGCTGGTGGATTTATATACATTGCTGTTGCTGGAGTGCTTGCTGAAATGAACAGCAACGGCAGCTCATCGTTGAAAAGCACGGCTGTTCAATTAACTGCATTGATACTTGGCATGGGAGTTGCACTATGTATATCACTTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

476

Amino Acids

50.86

Weight (kDa)

5.83

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68100 AT1G68100
fragaria_vesca	FvH4_4g26130 FvH4_4g26130
malus_domestica	MD13G1015600.v1.1 MD16G1013100.v1.1
prunus_persica	Prupe.1G338200_v2.0.a1
pyrus_communis	pycom13g01320 pycom16g01230
rosa_chinensis	RchiOBHm_Chr4g0433701
rosa_laevigata	RLG00000006737
rosa_multiflora	Rmu_sc0000312.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375140
rosa_rugosa	Rorug04G0270900.1 Rorug04G0271000.1
rosa_samantha	Rh4AG325300 Rh4BG333100 Rh4CG348300 Rh4DG329700
rosa_wichuraiana	Rw4G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	141, 1152
AccB1I	GGYRCC	1 cut(s)	850
AccBSI	CCGCTC	1 cut(s)	101
AciI	CCGC	5 cut(s)	99, 512, 638, 990, 1266
AclWI	GGATC	4 cut(s)	72, 950, 1107, 1120
AcoI	YGGCCR	3 cut(s)	163, 187, 243
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	2 cut(s)	779, 848
AfaI	GTAC	2 cut(s)	269, 423
AfiI	CCNNNNNNNGG	3 cut(s)	196, 996, 1122
AgsI	TTSAA	5 cut(s)	278, 1231, 1354, 1370, 1424
AjnI	CCWGG	2 cut(s)	123, 633
AluBI	AGCT	6 cut(s)	229, 325, 826, 1220, 1283, 1344
AluI	AGCT	6 cut(s)	229, 325, 826, 1220, 1283, 1344
Alw21I	GWGCWC	2 cut(s)	319, 365
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	4 cut(s)	72, 950, 1107, 1120
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	2 cut(s)	104, 233
AoxI	GGCC	6 cut(s)	163, 187, 243, 381, 559, 981
ApeKI	GCWGC	3 cut(s)	177, 322, 1341
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	706
AspLEI	GCGC	3 cut(s)	7, 142, 1153
AsuHPI	GGTGA	5 cut(s)	110, 385, 722, 1005, 1187
AvaI	CYCGRG	2 cut(s)	104, 233
BaeGI	GKGCMC	1 cut(s)	534
BamHI	GGATCC	1 cut(s)	1112
BanI	GGYRCC	1 cut(s)	850
BanII	GRGCYC	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
BauI	CACGAG	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	836
Bbv12I	GWGCWC	2 cut(s)	319, 365
BbvI	GCAGC	3 cut(s)	189, 334, 1353
BccI	CCATC	7 cut(s)	442, 741, 809, 851, 1049, 1070, 1075
BceAI	ACGGC	5 cut(s)	178, 190, 202, 1354, 1377
BciT130I	CCWGG	2 cut(s)	125, 635
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	1131
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	4 cut(s)	99, 178, 323, 1342
BlsI	GCNGC	4 cut(s)	100, 179, 324, 1343
Bme1390I	CCNGG	2 cut(s)	125, 635
BmeT110I	CYCGRG	2 cut(s)	104, 233
BmiI	GGNNCC	4 cut(s)	86, 852, 1114, 1264
BmrFI	CCNGG	2 cut(s)	125, 635
BmsI	GCATC	2 cut(s)	101, 481
BpiI	GAAGAC	1 cut(s)	836
BplI	GAGNNNNNCTC	2 cut(s)	677, 709
BpmI	CTGGAG	3 cut(s)	495, 717, 1332
BsaBI	GATNNNNATC	1 cut(s)	954
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	7 cut(s)	124, 160, 184, 234, 246, 354, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	706, 736
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 996, 1122
Bse1I	ACTGG	2 cut(s)	410, 931
Bse3DI	GCAATG	3 cut(s)	486, 1275, 1299
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	2 cut(s)	125, 635
BseDI	CCNNGG	7 cut(s)	124, 160, 184, 234, 246, 354, 438
BseGI	GGATG	6 cut(s)	208, 434, 496, 769, 1060, 1086
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	3 cut(s)	196, 996, 1122
BseMI	GCAATG	3 cut(s)	486, 1275, 1299
BseMII	CTCAG	4 cut(s)	59, 342, 969, 1254
BseNI	ACTGG	2 cut(s)	410, 931
BseRI	GAGGAG	2 cut(s)	212, 540
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	189, 334, 1353
BshFI	GGCC	6 cut(s)	165, 189, 245, 383, 561, 983
BshNI	GGYRCC	1 cut(s)	850
BsiHKAI	GWGCWC	2 cut(s)	319, 365
BsiHKCI	CYCGRG	2 cut(s)	104, 233
BslI	CCNNNNNNNGG	3 cut(s)	196, 996, 1122
BsmAI	GTCTC	1 cut(s)	344
BsmI	GAATGC	3 cut(s)	586, 598, 790
BsnI	GGCC	6 cut(s)	165, 189, 245, 383, 561, 983
Bso31I	GGTCTC	1 cut(s)	344
BsoBI	CYCGRG	2 cut(s)	104, 233
Bsp1286I	GDGCHC	4 cut(s)	57, 319, 365, 534
Bsp143I	GATC	8 cut(s)	64, 221, 286, 298, 610, 876, 955, 1112
BspACI	CCGC	5 cut(s)	99, 512, 638, 990, 1266
BspANI	GGCC	6 cut(s)	165, 189, 245, 383, 561, 983
BspCNI	CTCAG	4 cut(s)	60, 341, 970, 1253
BspLI	GGNNCC	4 cut(s)	86, 852, 1114, 1264
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	4 cut(s)	72, 950, 1107, 1120
BspQI	GCTCTTC	1 cut(s)	1232
BspT107I	GGYRCC	1 cut(s)	850
BspTNI	GGTCTC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	101
BsrDI	GCAATG	3 cut(s)	486, 1275, 1299
BsrI	ACTGG	2 cut(s)	410, 931
BssECI	CCNNGG	7 cut(s)	124, 160, 184, 234, 246, 354, 438
BssMI	GATC	8 cut(s)	64, 221, 286, 298, 610, 876, 955, 1112
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	2 cut(s)	354, 438
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	125, 635
Bst4CI	ACNGT	2 cut(s)	170, 673
Bst6I	CTCTTC	3 cut(s)	246, 1052, 1232
BstC8I	GCNNGC	4 cut(s)	365, 516, 1149, 1320
BstDEI	CTNAG	4 cut(s)	68, 328, 978, 1240
BstDSI	CCRYGG	2 cut(s)	160, 184
BstF5I	GGATG	6 cut(s)	208, 434, 496, 769, 1060, 1086
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 142, 1153
BstKTI	GATC	8 cut(s)	67, 224, 289, 301, 613, 879, 958, 1115
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	8 cut(s)	64, 221, 286, 298, 610, 876, 955, 1112
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 186, 989, 1250, 1341
BstNI	CCWGG	2 cut(s)	125, 635
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	123, 633
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	189, 334, 1353
BstV2I	GAAGAC	1 cut(s)	836
BstX2I	RGATCY	4 cut(s)	64, 610, 955, 1112
BstYI	RGATCY	4 cut(s)	64, 610, 955, 1112
BsuRI	GGCC	6 cut(s)	165, 189, 245, 383, 561, 983
BtgI	CCRYGG	2 cut(s)	160, 184
BtsCI	GGATG	6 cut(s)	208, 434, 496, 769, 1060, 1086
BtsIMutI	CAGTG	2 cut(s)	417, 678
Cac8I	GCNNGC	4 cut(s)	365, 516, 1149, 1320
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	3 cut(s)	7, 142, 1153
Csp6I	GTAC	2 cut(s)	268, 422
CspCI	CAANNNNNGTGG	2 cut(s)	110, 145
CviQI	GTAC	2 cut(s)	268, 422
DdeI	CTNAG	4 cut(s)	68, 328, 978, 1240
DpnI	GATC	8 cut(s)	66, 223, 288, 300, 612, 878, 957, 1114
DpnII	GATC	8 cut(s)	64, 221, 286, 298, 610, 876, 955, 1112
DraI	TTTAAA	1 cut(s)	864
EaeI	YGGCCR	3 cut(s)	163, 187, 243
Eam1104I	CTCTTC	3 cut(s)	246, 1052, 1232
EarI	CTCTTC	3 cut(s)	246, 1052, 1232
Eco130I	CCWWGG	2 cut(s)	354, 438
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	344
Eco57I	CTGAAG	2 cut(s)	779, 848
Eco88I	CYCGRG	2 cut(s)	104, 233
EcoRII	CCWGG	2 cut(s)	123, 633
EcoT14I	CCWWGG	2 cut(s)	354, 438
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	354, 438
FauI	CCCGC	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	99, 178, 323, 1342
FokI	GGATG	6 cut(s)	215, 421, 503, 776, 1067, 1093
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	99, 178, 323, 1342
FspAI	RTGCGCAY	1 cut(s)	141
FspBI	CTAG	1 cut(s)	1131
FspI	TGCGCA	2 cut(s)	141, 1152
GlaI	GCGC	3 cut(s)	6, 141, 1152
GluI	GCNGC	4 cut(s)	99, 178, 323, 1342
GsuI	CTGGAG	3 cut(s)	495, 717, 1332
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	6 cut(s)	165, 189, 245, 383, 561, 983
HhaI	GCGC	3 cut(s)	7, 142, 1153
Hin6I	GCGC	3 cut(s)	5, 140, 1151
HinP1I	GCGC	3 cut(s)	5, 140, 1151
HindIII	AAGCTT	1 cut(s)	227
HphI	GGTGA	5 cut(s)	110, 385, 722, 1005, 1187
Hpy166II	GTNNAC	1 cut(s)	1063
Hpy188I	TCNGA	7 cut(s)	64, 69, 538, 796, 838, 979, 1054
Hpy188III	TCNNGA	9 cut(s)	104, 233, 284, 296, 302, 343, 696, 779, 1131
Hpy8I	GTNNAC	1 cut(s)	1063
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	551, 754, 813
HpyCH4III	ACNGT	2 cut(s)	170, 673
HpyCH4V	TGCA	7 cut(s)	92, 132, 322, 790, 962, 1379, 1403
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 186, 989, 1250, 1341
HpyF3I	CTNAG	4 cut(s)	68, 328, 978, 1240
HspAI	GCGC	3 cut(s)	5, 140, 1151
Kzo9I	GATC	8 cut(s)	64, 221, 286, 298, 610, 876, 955, 1112
LguI	GCTCTTC	1 cut(s)	1232
LmnI	GCTCC	2 cut(s)	106, 476
Lsp1109I	GCAGC	3 cut(s)	189, 334, 1353
LweI	GCATC	2 cut(s)	101, 481
MaeI	CTAG	1 cut(s)	1131
MaeIII	GTNAC	2 cut(s)	170, 293
MalI	GATC	8 cut(s)	66, 223, 288, 300, 612, 878, 957, 1114
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	8 cut(s)	64, 221, 286, 298, 610, 876, 955, 1112
MboII	GAAGA	8 cut(s)	263, 491, 620, 647, 792, 841, 1039, 1219
MflI	RGATCY	4 cut(s)	64, 610, 955, 1112
MhlI	GDGCHC	4 cut(s)	57, 319, 365, 534
MluCI	AATT	7 cut(s)	239, 278, 506, 642, 706, 1066, 1370
MlyI	GAGTC	3 cut(s)	533, 724, 890
MroXI	GAANNNNTTC	1 cut(s)	706
MseI	TTAA	2 cut(s)	863, 1373
MslI	CAYNNNNRTG	3 cut(s)	288, 312, 579
MspA1I	CMGCKG	1 cut(s)	1283
MspR9I	CCNGG	2 cut(s)	125, 635
Mva1269I	GAATGC	3 cut(s)	586, 598, 790
MvaI	CCWGG	2 cut(s)	125, 635
MwoI	GCNNNNNNNGC	5 cut(s)	98, 186, 989, 1250, 1341
NdeII	GATC	8 cut(s)	64, 221, 286, 298, 610, 876, 955, 1112
NlaIV	GGNNCC	4 cut(s)	86, 852, 1114, 1264
NmeAIII	GCCGAG	2 cut(s)	243, 271
NmuCI	GTSAC	2 cut(s)	170, 293
NsbI	TGCGCA	2 cut(s)	141, 1152
NspI	RCATGY	1 cut(s)	518
PaeI	GCATGC	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	1232
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	3 cut(s)	586, 598, 790
PdmI	GAANNNNTTC	1 cut(s)	706
PfeI	GAWTC	7 cut(s)	346, 452, 773, 797, 869, 968, 1159
PkrI	GCNGC	4 cut(s)	100, 179, 324, 1343
PleI	GAGTC	3 cut(s)	533, 723, 890
PpsI	GAGTC	3 cut(s)	533, 723, 890
Psp6I	CCWGG	2 cut(s)	123, 633
PspGI	CCWGG	2 cut(s)	123, 633
PspN4I	GGNNCC	4 cut(s)	86, 852, 1114, 1264
PstI	CTGCAG	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	4 cut(s)	64, 610, 955, 1112
PvuII	CAGCTG	1 cut(s)	1283
RsaI	GTAC	2 cut(s)	269, 423
RsaNI	GTAC	2 cut(s)	268, 422
RseI	CAYNNNNRTG	3 cut(s)	288, 312, 579
SapI	GCTCTTC	1 cut(s)	1232
SaqAI	TTAA	2 cut(s)	863, 1373
SatI	GCNGC	4 cut(s)	99, 178, 323, 1342
Sau3AI	GATC	8 cut(s)	64, 221, 286, 298, 610, 876, 955, 1112
SchI	GAGTC	3 cut(s)	533, 724, 890
ScrFI	CCNGG	2 cut(s)	125, 635
SduI	GDGCHC	4 cut(s)	57, 319, 365, 534
SfaNI	GCATC	2 cut(s)	101, 481
SfcI	CTRYAG	1 cut(s)	320
SmiMI	CAYNNNNRTG	3 cut(s)	288, 312, 579
SphI	GCATGC	1 cut(s)	518
Sse9I	AATT	7 cut(s)	239, 278, 506, 642, 706, 1066, 1370
SsiI	CCGC	5 cut(s)	99, 512, 638, 990, 1266
SspMI	CTAG	1 cut(s)	1131
StyD4I	CCNGG	2 cut(s)	123, 633
StyI	CCWWGG	2 cut(s)	354, 438
TaaI	ACNGT	2 cut(s)	170, 673
TaqI	TCGA	2 cut(s)	224, 879
TasI	AATT	7 cut(s)	239, 278, 506, 642, 706, 1066, 1370
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	7 cut(s)	346, 452, 773, 797, 869, 968, 1159
Tru1I	TTAA	2 cut(s)	863, 1373
Tru9I	TTAA	2 cut(s)	863, 1373
TscAI	CASTG	2 cut(s)	417, 678
TseFI	GTSAC	2 cut(s)	170, 293
TseI	GCWGC	3 cut(s)	177, 322, 1341
Tsp45I	GTSAC	2 cut(s)	170, 293
TspDTI	ATGAA	7 cut(s)	275, 338, 491, 570, 699, 1097, 1343
TspGWI	ACGGA	3 cut(s)	285, 855, 1105
TspRI	CASTG	2 cut(s)	417, 678
XapI	RAATTY	1 cut(s)	278
XbaI	TCTAGA	1 cut(s)	1130
XceI	RCATGY	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	706
XspI	CTAG	1 cut(s)	1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.