Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011055

Physical Location & Seq

Genomic Coordinates Reverse (-)

988872 .. 999846

Gene Structure 10975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1015600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGCGCTTTGTAAGAAAGGTTTCGTCTTGGTTGCTGTTGCTTTGGTTGTTGCGCACTGTTCGGATCTGAGTTTTGTTTCTGGGTTCTCTGCATCTGCCGCTCACGAGCCTCACACTCAACACCACGGCTGCAGCCATGCGCACCACCACGACCACGGCCACGGTCACAGCAGCGGCCACAGCCACAGCCACGGCCACGGCCACCAAGAGGAGAGATTGTTGGCGACATCGAAGCTTCCCGAGGAATTGGCGGAGGAGGAGGACATGAAGTTGTACGGATTTGAATTTCATCAGCACGTTCATGGTCACGATCACGAGCATTTTGGTGCTCCGCAGCTCTCGGTTCTTGGTCTTTGGATTCATTCCTTGGGGTGCTCGCTTTTGGTGAGCATGGCCTCCCTCATTTGCCTGATTATATTGCCAGTGATATTTGTGCAGGGGAAGCCATCCAAGGCAGTTGTTGATTCGTTGGCTTTATTTGGGGCTGGAGCAATGTTGGGGGATGCTTTTCTTCATCAATTACCACATGCTTTTGGAGGAGGGCACTCCGACTCGCATGACCACCATGAAGGCCATTCCCATTCCCATTTGCATGAGCATTCACATTCGCATTCTTTGGACGATCTTTCAGTAGGATTATCCATCCTGGCGGGAATTGTATTATTTCTTCTGGTAGAAAAGACAGTGAGGTATGTTGAGGAAAACTCTGGAGGAACTAATGCATGGAGTCATGGTCATCATCATCATCATCATCATAAGAAGAGCAAGAAATTGAAGGATGATAATGATTCTCATGATGACTTGCAGTCAGAATCTTCTAATGGAAAAGATGGAAGGAAACTGACGAAGTCATCTGACGGAGAAGTGACAGCTGATGGTTTAAATGATTCTTTGATTGAAAATACTCAACAGGACTCTCATATTCGCAAGAGAAACACTAGGACTGGTGGGAGCGATGATAAACAACATGTACATGCTGCAAATGATTCCACTCCTGAGGCCAAGTCCGCAAAAGGGGAAACTACTCGATCACCCTCAAATCTTGTGTTCGGCTATCTCAATCTCTTCTCGGATGGTGTTCACAATTTTACAGATGGGATGGCTTTAGGAAGTGCATTCCTGCTTCATGGATCTGTTGGTGGGTGGTCTAGAACTCTGTTCTTGCTTGCACATGAGATTCCTCAAGAGGTCGGTGATTTTGGTATTCTTGTAAGGTCTGGTTTCAGCGTATCTAAAGCTCTGTTCTTCAACTTTCTCTCAGCACTTGTGGCACTACTTGGAACCGCAGTGGCTCTTATTTTGGGACAGAATGCAGGACAGTCATCTTTGATTGAGGGTTTTACAGCTGGTGGATTTATATACATTGCTGTTGCTGGAGTGCTTGCTGAAATGAACAACAATGGCGGCTCATCGTTGAAAAGCACGGCTTTACAGCTAACTGCGTTGATACTTGGCATAGGAGTTGCCCTATGTATATCACTTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

497

Amino Acids

53.01

Weight (kDa)

6.17

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	116 - 492	1.2e-54	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68100 AT1G68100
fragaria_vesca	FvH4_4g26130 FvH4_4g26130
malus_domestica	MD13G1015600.v1.1 MD16G1013100.v1.1
prunus_persica	Prupe.1G338200_v2.0.a1
pyrus_communis	pycom13g01320 pycom16g01230
rosa_chinensis	RchiOBHm_Chr4g0433701
rosa_laevigata	RLG00000006737
rosa_multiflora	Rmu_sc0000312.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375140
rosa_rugosa	Rorug04G0270900.1 Rorug04G0271000.1
rosa_samantha	Rh4AG325300 Rh4BG333100 Rh4CG348300 Rh4DG329700
rosa_wichuraiana	Rw4G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	54, 141
AccBSI	CCGCTC	1 cut(s)	101
AciI	CCGC	8 cut(s)	99, 174, 251, 332, 650, 1008, 1284, 1404
AclWI	GGATC	2 cut(s)	72, 1138
AcoI	YGGCCR	4 cut(s)	157, 175, 193, 199
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	2 cut(s)	275, 972
AfiI	CCNNNNNNNGG	2 cut(s)	208, 1014
AflIII	ACRYGT	1 cut(s)	967
AgsI	TTSAA	6 cut(s)	284, 775, 899, 1249, 1417, 1487
AhdI	GACNNNNNGTC	1 cut(s)	805
AjnI	CCWGG	1 cut(s)	645
AluBI	AGCT	6 cut(s)	235, 337, 872, 1238, 1346, 1435
AluI	AGCT	6 cut(s)	235, 337, 872, 1238, 1346, 1435
Alw21I	GWGCWC	2 cut(s)	331, 377
AlwI	GGATC	2 cut(s)	72, 1138
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	7 cut(s)	157, 175, 193, 199, 393, 571, 999
ApeKI	GCWGC	5 cut(s)	129, 132, 171, 334, 977
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	3 cut(s)	7, 55, 142
AsuHPI	GGTGA	3 cut(s)	397, 1023, 1205
AvaI	CYCGRG	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	996
BaeGI	GKGCMC	1 cut(s)	546
BarI	GAAGNNNNNNTAC	2 cut(s)	651, 683
BauI	CACGAG	2 cut(s)	104, 314
Bbv12I	GWGCWC	2 cut(s)	331, 377
BbvI	GCAGC	5 cut(s)	116, 144, 183, 346, 964
BccI	CCATC	7 cut(s)	454, 650, 824, 869, 1067, 1088, 1093
BceAI	ACGGC	5 cut(s)	142, 172, 208, 214, 1440
BciT130I	CCWGG	1 cut(s)	647
BfaI	CTAG	2 cut(s)	939, 1149
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	8 cut(s)	99, 130, 133, 172, 175, 335, 978, 1405
BlsI	GCNGC	8 cut(s)	100, 131, 134, 173, 176, 336, 979, 1406
Bme1390I	CCNGG	1 cut(s)	647
BmeRI	GACNNNNNGTC	1 cut(s)	805
BmeT110I	CYCGRG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	1282
BmrFI	CCNGG	1 cut(s)	647
BmsI	GCATC	2 cut(s)	101, 493
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpmI	CTGGAG	3 cut(s)	507, 729, 1395
BpuEI	CTTGAG	1 cut(s)	1167
BsaJI	CCNNGG	8 cut(s)	124, 154, 160, 190, 196, 240, 366, 450
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 718, 748
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 1014
Bse1I	ACTGG	2 cut(s)	422, 949
Bse21I	CCTNAGG	1 cut(s)	996
Bse3DI	GCAATG	2 cut(s)	498, 1362
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	8 cut(s)	124, 154, 160, 190, 196, 240, 366, 450
BseGI	GGATG	6 cut(s)	446, 508, 642, 784, 1078, 1104
BseLI	CCNNNNNNNGG	2 cut(s)	208, 1014
BseMI	GCAATG	2 cut(s)	498, 1362
BseMII	CTCAG	3 cut(s)	59, 987, 1272
BseNI	ACTGG	2 cut(s)	422, 949
BseRI	GAGGAG	4 cut(s)	224, 269, 272, 552
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	5 cut(s)	116, 144, 183, 346, 964
BsgI	GTGCAG	1 cut(s)	455
BshFI	GGCC	7 cut(s)	159, 177, 195, 201, 395, 573, 1001
BsiHKAI	GWGCWC	2 cut(s)	331, 377
BsiHKCI	CYCGRG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	1317
BslI	CCNNNNNNNGG	2 cut(s)	208, 1014
BsmFI	GGGAC	1 cut(s)	1317
BsmI	GAATGC	4 cut(s)	598, 610, 1115, 1315
BsnI	GGCC	7 cut(s)	159, 177, 195, 201, 395, 573, 1001
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	3 cut(s)	331, 377, 546
Bsp1407I	TGTACA	1 cut(s)	970
Bsp143I	GATC	5 cut(s)	64, 310, 622, 1028, 1130
BspACI	CCGC	8 cut(s)	99, 174, 251, 332, 650, 1008, 1284, 1404
BspANI	GGCC	7 cut(s)	159, 177, 195, 201, 395, 573, 1001
BspCNI	CTCAG	3 cut(s)	60, 988, 1271
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	1 cut(s)	1282
BspMAI	CTGCAG	1 cut(s)	134
BspPI	GGATC	2 cut(s)	72, 1138
BspQI	GCTCTTC	1 cut(s)	755
BsrBI	CCGCTC	1 cut(s)	101
BsrDI	GCAATG	2 cut(s)	498, 1362
BsrGI	TGTACA	1 cut(s)	970
BsrI	ACTGG	2 cut(s)	422, 949
BssECI	CCNNGG	8 cut(s)	124, 154, 160, 190, 196, 240, 366, 450
BssMI	GATC	5 cut(s)	64, 310, 622, 1028, 1130
BssSI	CACGAG	2 cut(s)	104, 314
BssT1I	CCWWGG	2 cut(s)	366, 450
Bst2BI	CACGAG	2 cut(s)	104, 314
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	4 cut(s)	59, 164, 685, 1320
Bst6I	CTCTTC	2 cut(s)	755, 1070
BstAUI	TGTACA	1 cut(s)	970
BstC8I	GCNNGC	3 cut(s)	377, 1167, 1383
BstDEI	CTNAG	3 cut(s)	68, 996, 1258
BstDSI	CCRYGG	5 cut(s)	124, 154, 160, 190, 196
BstF5I	GGATG	6 cut(s)	446, 508, 642, 784, 1078, 1104
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 55, 142
BstKTI	GATC	5 cut(s)	67, 313, 625, 1031, 1133
BstMBI	GATC	5 cut(s)	64, 310, 622, 1028, 1130
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 180, 442, 1007, 1268
BstNI	CCWGG	1 cut(s)	647
BstNSI	RCATGY	3 cut(s)	530, 971, 977
BstSCI	CCNGG	1 cut(s)	645
BstSFI	CTRYAG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	546
BstV1I	GCAGC	5 cut(s)	116, 144, 183, 346, 964
BstX2I	RGATCY	2 cut(s)	64, 1130
BstYI	RGATCY	2 cut(s)	64, 1130
Bsu36I	CCTNAGG	1 cut(s)	996
BsuRI	GGCC	7 cut(s)	159, 177, 195, 201, 395, 573, 1001
BtgI	CCRYGG	5 cut(s)	124, 154, 160, 190, 196
BtgZI	GCGATG	1 cut(s)	969
BtsCI	GGATG	6 cut(s)	446, 508, 642, 784, 1078, 1104
BtsI	GCAGTG	1 cut(s)	1293
BtsIMutI	CAGTG	4 cut(s)	55, 429, 690, 1293
Cac8I	GCNNGC	3 cut(s)	377, 1167, 1383
CciI	TCATGA	1 cut(s)	793
CfoI	GCGC	3 cut(s)	7, 55, 142
Csp6I	GTAC	2 cut(s)	274, 971
CviQI	GTAC	2 cut(s)	274, 971
DdeI	CTNAG	3 cut(s)	68, 996, 1258
DpnI	GATC	5 cut(s)	66, 312, 624, 1030, 1132
DpnII	GATC	5 cut(s)	64, 310, 622, 1028, 1130
DraI	TTTAAA	1 cut(s)	882
DriI	GACNNNNNGTC	1 cut(s)	805
EaeI	YGGCCR	4 cut(s)	157, 175, 193, 199
Eam1104I	CTCTTC	2 cut(s)	755, 1070
Eam1105I	GACNNNNNGTC	1 cut(s)	805
EarI	CTCTTC	2 cut(s)	755, 1070
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	366, 450
Eco81I	CCTNAGG	1 cut(s)	996
Eco88I	CYCGRG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	645
EcoT14I	CCWWGG	2 cut(s)	366, 450
EcoT22I	ATGCAT	1 cut(s)	724
ErhI	CCWWGG	2 cut(s)	366, 450
FalI	AAGNNNNNCTT	2 cut(s)	1411, 1443
FaqI	GGGAC	1 cut(s)	1317
FauI	CCCGC	1 cut(s)	643
Fnu4HI	GCNGC	8 cut(s)	99, 130, 133, 172, 175, 335, 978, 1405
FokI	GGATG	6 cut(s)	433, 515, 629, 791, 1085, 1111
Fsp4HI	GCNGC	8 cut(s)	99, 130, 133, 172, 175, 335, 978, 1405
FspAI	RTGCGCAY	1 cut(s)	141
FspBI	CTAG	2 cut(s)	939, 1149
FspI	TGCGCA	2 cut(s)	54, 141
GlaI	GCGC	3 cut(s)	6, 54, 141
GluI	GCNGC	8 cut(s)	99, 130, 133, 172, 175, 335, 978, 1405
GsuI	CTGGAG	3 cut(s)	507, 729, 1395
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	7 cut(s)	159, 177, 195, 201, 395, 573, 1001
HhaI	GCGC	3 cut(s)	7, 55, 142
Hin6I	GCGC	3 cut(s)	5, 53, 140
HinP1I	GCGC	3 cut(s)	5, 53, 140
HindIII	AAGCTT	1 cut(s)	233
HphI	GGTGA	3 cut(s)	397, 1023, 1205
Hpy166II	GTNNAC	1 cut(s)	1081
Hpy188I	TCNGA	6 cut(s)	64, 69, 550, 811, 856, 1072
Hpy188III	TCNNGA	9 cut(s)	104, 239, 308, 314, 708, 794, 995, 1149, 1184
Hpy8I	GTNNAC	1 cut(s)	1081
HpyAV	CCTTC	3 cut(s)	563, 769, 828
HpyCH4III	ACNGT	4 cut(s)	59, 164, 685, 1320
HpyCH4IV	ACGT	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 180, 442, 1007, 1268
HpyF3I	CTNAG	3 cut(s)	68, 996, 1258
HpySE526I	ACGT	1 cut(s)	297
HspAI	GCGC	3 cut(s)	5, 53, 140
Kzo9I	GATC	5 cut(s)	64, 310, 622, 1028, 1130
LguI	GCTCTTC	1 cut(s)	755
LmnI	GCTCC	3 cut(s)	334, 488, 951
Lsp1109I	GCAGC	5 cut(s)	116, 144, 183, 346, 964
LweI	GCATC	2 cut(s)	101, 493
MaeI	CTAG	2 cut(s)	939, 1149
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	164, 305, 865
MalI	GATC	5 cut(s)	66, 312, 624, 1030, 1132
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	5 cut(s)	64, 310, 622, 1028, 1130
MboII	GAAGA	6 cut(s)	503, 659, 772, 807, 1057, 1237
MflI	RGATCY	2 cut(s)	64, 1130
MhlI	GDGCHC	3 cut(s)	331, 377, 546
MluCI	AATT	6 cut(s)	245, 284, 518, 654, 770, 1084
MlyI	GAGTC	3 cut(s)	545, 736, 908
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	1 cut(s)	724
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	881
MslI	CAYNNNNRTG	4 cut(s)	300, 324, 591, 972
MspA1I	CMGCKG	3 cut(s)	174, 872, 1346
MspR9I	CCNGG	1 cut(s)	647
Mva1269I	GAATGC	4 cut(s)	598, 610, 1115, 1315
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	5 cut(s)	98, 180, 442, 1007, 1268
NdeII	GATC	5 cut(s)	64, 310, 622, 1028, 1130
NlaIV	GGNNCC	1 cut(s)	1282
NmuCI	GTSAC	3 cut(s)	164, 305, 865
NsbI	TGCGCA	2 cut(s)	54, 141
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	3 cut(s)	530, 971, 977
PagI	TCATGA	1 cut(s)	793
PciI	ACATGT	1 cut(s)	967
PciSI	GCTCTTC	1 cut(s)	755
PctI	GAATGC	4 cut(s)	598, 610, 1115, 1315
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	7 cut(s)	358, 464, 788, 812, 887, 986, 1177
PflFI	GACNNNGTC	1 cut(s)	847
PkrI	GCNGC	8 cut(s)	100, 131, 134, 173, 176, 336, 979, 1406
PleI	GAGTC	3 cut(s)	545, 735, 908
PpsI	GAGTC	3 cut(s)	545, 735, 908
PscI	ACATGT	1 cut(s)	967
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	1282
PstI	CTGCAG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	64, 1130
PsyI	GACNNNGTC	1 cut(s)	847
PvuII	CAGCTG	2 cut(s)	872, 1346
RsaI	GTAC	2 cut(s)	275, 972
RsaNI	GTAC	2 cut(s)	274, 971
RseI	CAYNNNNRTG	4 cut(s)	300, 324, 591, 972
SapI	GCTCTTC	1 cut(s)	755
SaqAI	TTAA	1 cut(s)	881
SatI	GCNGC	8 cut(s)	99, 130, 133, 172, 175, 335, 978, 1405
Sau3AI	GATC	5 cut(s)	64, 310, 622, 1028, 1130
SchI	GAGTC	3 cut(s)	545, 736, 908
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	3 cut(s)	331, 377, 546
SfaNI	GCATC	2 cut(s)	101, 493
SfcI	CTRYAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	4 cut(s)	300, 324, 591, 972
SmlI	CTYRAG	1 cut(s)	1182
SmoI	CTYRAG	1 cut(s)	1182
Sse9I	AATT	6 cut(s)	245, 284, 518, 654, 770, 1084
SsiI	CCGC	8 cut(s)	99, 174, 251, 332, 650, 1008, 1284, 1404
SspMI	CTAG	2 cut(s)	939, 1149
StyD4I	CCNGG	1 cut(s)	645
StyI	CCWWGG	2 cut(s)	366, 450
TaaI	ACNGT	4 cut(s)	59, 164, 685, 1320
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	230, 1027
TasI	AATT	6 cut(s)	245, 284, 518, 654, 770, 1084
TatI	WGTACW	1 cut(s)	970
TauI	GCSGC	3 cut(s)	101, 177, 1407
TfiI	GAWTC	7 cut(s)	358, 464, 788, 812, 887, 986, 1177
Tru1I	TTAA	1 cut(s)	881
Tru9I	TTAA	1 cut(s)	881
TscAI	CASTG	4 cut(s)	62, 429, 690, 1293
TseFI	GTSAC	3 cut(s)	164, 305, 865
TseI	GCWGC	5 cut(s)	129, 132, 171, 334, 977
Tsp45I	GTSAC	3 cut(s)	164, 305, 865
TspDTI	ATGAA	8 cut(s)	278, 281, 290, 350, 503, 582, 1115, 1406
TspGWI	ACGGA	2 cut(s)	291, 873
TspRI	CASTG	4 cut(s)	62, 429, 690, 1293
Tth111I	GACNNNGTC	1 cut(s)	847
XapI	RAATTY	1 cut(s)	284
XbaI	TCTAGA	1 cut(s)	1148
XceI	RCATGY	3 cut(s)	530, 971, 977
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	939, 1149
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.