Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011055

Physical Location & Seq

Genomic Coordinates Reverse (-)

857210 .. 860717

Gene Structure 3508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01320.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGCGCTTTGTAAGAAAGGTTTCGTCTTGGTTGCTGTTGCTTTGGTTGTTGGGCGCTGTTCGGATCTGAGTTTTGTTTCTGGGTTCTCTGCATCTGCCGCTCACGAGCGTCACACTCACCACCACGGCTGCAGCCATGCGCACGACCACGGCCACGGTCACAGCAGCGGCCACAGCCACAGCCACAGCCACGGCCACCAAGAGGACAGATTGTTGGCGACATCGAAGCTTCCCGAGGAATTGGCGGAGGAGGAGGACATGAAGTTGTACGGATTTGAATTTCATCAGCACGATCACGGTCACGATCACGAGCATTTTGGTGCTCCGCAGCTCTCGGTTCTTGGTCTCTGGATTCATTCCTTGGGGTGCTCGCTTTTGGTGAGCATGGCCTCCCTCATTTGCCTGATTATCTTGCCAGTGGTATTTGTGCAGGGGAAGCCATCCAAGGCAGTTGTTGATTCGTTGGCTTTATTTGGGGCTGGAGCAATGTTGGGGGATGCTTTTCTTCATCAATTACCACATGCTTTTGGAGGAGGGCACTCCGACTCGCATGACCACCATGAAGGCCATTCCCATTCCCATTTGCATAAGCATTCACATTCGCATTCTTTGGAAGATCTTTCAGTAGGATTATCTGTCCTGGTGGGAATTGTATTATTTCTTCTGGTAGAAAAGACAGTGAGGTATGTTGAGGAAAACTCTGGAGGAACTAATGCATGGAGTCATGGTCATCATCATCATCATCATAAGAACAGCAAAAAATTGAAGGATGATAATGATTCTCATGATGACTTGCTGTCAGAATCTTCTAATGGAAGCGATGGAAGGAAACTGAAGAAGTCATCTGACGGAGAAGTTACAGCTGATGATTTAAATGATTCTTTGATCGAAAATACTCAACAGGACTCTCATATTCGTAAGAGAAACACTAGGACTGGTGGGAGCGATGATAAACAACATATACATGCTACAGATGATTCCACTTCTGAGGCCAAGTCCACAAAAGGGAAAACTACTCAATCACCCTCAAATCTTGTGTTCGGCTATCTCAATCTCTTCTCGGATGGTGTTCACAATTTTACGGATGGGATGGCTTTAGGAAGTGCATTCCTGCTTCATGGATCTGTTGGTGGGTGGTCTAGAACTCTGTTCTTGCTCGCACATGAGATTCCTCAAGAGGTCGGTGATTTTGGTATTCTTGTAAGGTCTGGTTTCAGCGTATCTAAAGCTCTGTTCTTCAACTTTCTCTCAGCACTTGTGGCACTACTTGGAACCGCAGTGGCTCTTATTTTGGGACAGAATGCAGGACAGTCATCTTTGATTGAGGGTTTTACAGCTGGTGGATTTATATACATTGCTGTTGCTGGAGTGCTTGCTGAAACGAACAACAATGGCGGCTCATCATTGAAAAGCACGGCTTTACAGTTAACTGGATTGATACTTGGCATGGGAGTTGCCCTATGTATATCACTTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

494

Amino Acids

52.75

Weight (kDa)

6.16

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68100 AT1G68100
fragaria_vesca	FvH4_4g26130 FvH4_4g26130
malus_domestica	MD13G1015600.v1.1 MD16G1013100.v1.1
prunus_persica	Prupe.1G338200_v2.0.a1
pyrus_communis	pycom13g01320 pycom16g01230
rosa_chinensis	RchiOBHm_Chr4g0433701
rosa_laevigata	RLG00000006737
rosa_multiflora	Rmu_sc0000312.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375140
rosa_rugosa	Rorug04G0270900.1 Rorug04G0271000.1
rosa_samantha	Rh4AG325300 Rh4BG333100 Rh4CG348300 Rh4DG329700
rosa_wichuraiana	Rw4G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	141
AccBSI	CCGCTC	1 cut(s)	101
AciI	CCGC	6 cut(s)	99, 168, 245, 326, 1275, 1395
AclWI	GGATC	2 cut(s)	72, 1129
AcoI	YGGCCR	3 cut(s)	151, 169, 193
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	202, 1005
AgsI	TTSAA	5 cut(s)	278, 766, 1240, 1408, 1478
AhdI	GACNNNNNGTC	1 cut(s)	796
AjnI	CCWGG	1 cut(s)	639
AluBI	AGCT	5 cut(s)	229, 331, 863, 1229, 1337
AluI	AGCT	5 cut(s)	229, 331, 863, 1229, 1337
Alw21I	GWGCWC	2 cut(s)	325, 371
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	2 cut(s)	72, 1129
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	6 cut(s)	151, 169, 193, 387, 565, 990
ApeKI	GCWGC	4 cut(s)	129, 132, 165, 328
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	3 cut(s)	7, 57, 142
AsuHPI	GGTGA	4 cut(s)	110, 391, 1014, 1196
AvaI	CYCGRG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	540
BarI	GAAGNNNNNNTAC	2 cut(s)	645, 677
BauI	CACGAG	2 cut(s)	104, 308
Bbv12I	GWGCWC	2 cut(s)	325, 371
BbvI	GCAGC	4 cut(s)	116, 144, 177, 340
BccI	CCATC	5 cut(s)	448, 815, 1058, 1079, 1084
BceAI	ACGGC	4 cut(s)	142, 166, 208, 1431
BciT130I	CCWGG	1 cut(s)	641
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	930, 1140
BfmI	CTRYAG	2 cut(s)	130, 969
BfoI	RGCGCY	2 cut(s)	8, 58
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	7 cut(s)	99, 130, 133, 166, 169, 329, 1396
BlsI	GCNGC	7 cut(s)	100, 131, 134, 167, 170, 330, 1397
Bme1390I	CCNGG	1 cut(s)	641
BmeRI	GACNNNNNGTC	1 cut(s)	796
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	1273
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	2 cut(s)	101, 487
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	3 cut(s)	501, 723, 1386
BpuEI	CTTGAG	1 cut(s)	1158
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	7 cut(s)	124, 148, 154, 190, 234, 360, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	712, 742
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 1005
Bse1I	ACTGG	3 cut(s)	416, 940, 1435
Bse3DI	GCAATG	2 cut(s)	492, 1353
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	7 cut(s)	124, 148, 154, 190, 234, 360, 444
BseGI	GGATG	6 cut(s)	440, 502, 775, 1069, 1090, 1095
BseLI	CCNNNNNNNGG	2 cut(s)	202, 1005
BseMI	GCAATG	2 cut(s)	492, 1353
BseMII	CTCAG	3 cut(s)	59, 978, 1263
BseNI	ACTGG	3 cut(s)	416, 940, 1435
BseRI	GAGGAG	3 cut(s)	263, 266, 546
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	4 cut(s)	116, 144, 177, 340
BsgI	GTGCAG	1 cut(s)	449
BshFI	GGCC	6 cut(s)	153, 171, 195, 389, 567, 992
BsiHKAI	GWGCWC	2 cut(s)	325, 371
BsiHKCI	CYCGRG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	1308
BslI	CCNNNNNNNGG	2 cut(s)	202, 1005
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	1308
BsmI	GAATGC	4 cut(s)	592, 604, 1106, 1306
BsnI	GGCC	6 cut(s)	153, 171, 195, 389, 567, 992
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	3 cut(s)	325, 371, 540
Bsp143I	GATC	6 cut(s)	64, 292, 304, 616, 885, 1121
BspACI	CCGC	6 cut(s)	99, 168, 245, 326, 1275, 1395
BspANI	GGCC	6 cut(s)	153, 171, 195, 389, 567, 992
BspCNI	CTCAG	3 cut(s)	60, 979, 1262
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	1 cut(s)	1273
BspMAI	CTGCAG	1 cut(s)	134
BspPI	GGATC	2 cut(s)	72, 1129
BspTNI	GGTCTC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	101
BsrDI	GCAATG	2 cut(s)	492, 1353
BsrI	ACTGG	3 cut(s)	416, 940, 1435
BssECI	CCNNGG	7 cut(s)	124, 148, 154, 190, 234, 360, 444
BssMI	GATC	6 cut(s)	64, 292, 304, 616, 885, 1121
BssSI	CACGAG	2 cut(s)	104, 308
BssT1I	CCWWGG	2 cut(s)	360, 444
Bst2BI	CACGAG	2 cut(s)	104, 308
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	5 cut(s)	158, 299, 679, 1311, 1425
Bst6I	CTCTTC	1 cut(s)	1061
BstC8I	GCNNGC	3 cut(s)	371, 1158, 1374
BstDEI	CTNAG	3 cut(s)	68, 987, 1249
BstDSI	CCRYGG	4 cut(s)	124, 148, 154, 190
BstF5I	GGATG	6 cut(s)	440, 502, 775, 1069, 1090, 1095
BstH2I	RGCGCY	2 cut(s)	8, 58
BstHHI	GCGC	3 cut(s)	7, 57, 142
BstKTI	GATC	6 cut(s)	67, 295, 307, 619, 888, 1124
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	6 cut(s)	64, 292, 304, 616, 885, 1121
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 174, 436, 1259
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	2 cut(s)	524, 968
BstSCI	CCNGG	1 cut(s)	639
BstSFI	CTRYAG	2 cut(s)	130, 969
BstSLI	GKGCMC	1 cut(s)	540
BstV1I	GCAGC	4 cut(s)	116, 144, 177, 340
BstX2I	RGATCY	3 cut(s)	64, 616, 1121
BstYI	RGATCY	3 cut(s)	64, 616, 1121
BsuRI	GGCC	6 cut(s)	153, 171, 195, 389, 567, 992
BtgI	CCRYGG	4 cut(s)	124, 148, 154, 190
BtgZI	GCGATG	2 cut(s)	834, 960
BtsCI	GGATG	6 cut(s)	440, 502, 775, 1069, 1090, 1095
BtsI	GCAGTG	1 cut(s)	1284
BtsIMutI	CAGTG	3 cut(s)	423, 684, 1284
Cac8I	GCNNGC	3 cut(s)	371, 1158, 1374
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	3 cut(s)	7, 57, 142
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	268
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	68, 987, 1249
DpnI	GATC	6 cut(s)	66, 294, 306, 618, 887, 1123
DpnII	GATC	6 cut(s)	64, 292, 304, 616, 885, 1121
DraI	TTTAAA	1 cut(s)	873
DriI	GACNNNNNGTC	1 cut(s)	796
EaeI	YGGCCR	3 cut(s)	151, 169, 193
Eam1104I	CTCTTC	1 cut(s)	1061
Eam1105I	GACNNNNNGTC	1 cut(s)	796
EarI	CTCTTC	1 cut(s)	1061
EciI	GGCGGA	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	360, 444
Eco31I	GGTCTC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	2 cut(s)	360, 444
EcoT22I	ATGCAT	1 cut(s)	718
ErhI	CCWWGG	2 cut(s)	360, 444
FalI	AAGNNNNNCTT	2 cut(s)	1402, 1434
FaqI	GGGAC	1 cut(s)	1308
Fnu4HI	GCNGC	7 cut(s)	99, 130, 133, 166, 169, 329, 1396
FokI	GGATG	6 cut(s)	427, 509, 782, 1076, 1097, 1102
Fsp4HI	GCNGC	7 cut(s)	99, 130, 133, 166, 169, 329, 1396
FspAI	RTGCGCAY	1 cut(s)	141
FspBI	CTAG	2 cut(s)	930, 1140
FspI	TGCGCA	1 cut(s)	141
GlaI	GCGC	3 cut(s)	6, 56, 141
GluI	GCNGC	7 cut(s)	99, 130, 133, 166, 169, 329, 1396
GsuI	CTGGAG	3 cut(s)	501, 723, 1386
HaeII	RGCGCY	2 cut(s)	8, 58
HaeIII	GGCC	6 cut(s)	153, 171, 195, 389, 567, 992
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	3 cut(s)	7, 57, 142
Hin6I	GCGC	3 cut(s)	5, 55, 140
HinP1I	GCGC	3 cut(s)	5, 55, 140
HincII	GTYRAC	1 cut(s)	1428
HindII	GTYRAC	1 cut(s)	1428
HindIII	AAGCTT	1 cut(s)	227
HpaI	GTTAAC	1 cut(s)	1428
HphI	GGTGA	4 cut(s)	110, 391, 1014, 1196
Hpy166II	GTNNAC	3 cut(s)	999, 1072, 1428
Hpy188I	TCNGA	7 cut(s)	64, 69, 544, 802, 847, 988, 1063
Hpy188III	TCNNGA	9 cut(s)	104, 233, 302, 308, 349, 702, 785, 1140, 1175
Hpy8I	GTNNAC	3 cut(s)	999, 1072, 1428
HpyAV	CCTTC	3 cut(s)	557, 760, 819
HpyCH4III	ACNGT	5 cut(s)	158, 299, 679, 1311, 1425
HpyCH4V	TGCA	7 cut(s)	92, 132, 430, 586, 716, 1106, 1304
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 174, 436, 1259
HpyF3I	CTNAG	3 cut(s)	68, 987, 1249
HspAI	GCGC	3 cut(s)	5, 55, 140
KspAI	GTTAAC	1 cut(s)	1428
Kzo9I	GATC	6 cut(s)	64, 292, 304, 616, 885, 1121
LmnI	GCTCC	3 cut(s)	328, 482, 942
Lsp1109I	GCAGC	4 cut(s)	116, 144, 177, 340
LweI	GCATC	2 cut(s)	101, 487
MaeI	CTAG	2 cut(s)	930, 1140
MaeIII	GTNAC	4 cut(s)	110, 158, 299, 856
MalI	GATC	6 cut(s)	66, 294, 306, 618, 887, 1123
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	6 cut(s)	64, 292, 304, 616, 885, 1121
MboII	GAAGA	7 cut(s)	497, 626, 653, 798, 847, 1048, 1228
MflI	RGATCY	3 cut(s)	64, 616, 1121
MhlI	GDGCHC	3 cut(s)	325, 371, 540
MluCI	AATT	6 cut(s)	239, 278, 512, 648, 761, 1075
MlyI	GAGTC	3 cut(s)	539, 730, 899
MmeI	TCCRAC	1 cut(s)	567
Mph1103I	ATGCAT	1 cut(s)	718
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	2 cut(s)	872, 1427
MslI	CAYNNNNRTG	2 cut(s)	318, 963
MspA1I	CMGCKG	3 cut(s)	168, 863, 1337
MspR9I	CCNGG	1 cut(s)	641
Mva1269I	GAATGC	4 cut(s)	592, 604, 1106, 1306
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	4 cut(s)	98, 174, 436, 1259
NdeII	GATC	6 cut(s)	64, 292, 304, 616, 885, 1121
NlaIV	GGNNCC	1 cut(s)	1273
NmuCI	GTSAC	3 cut(s)	110, 158, 299
NsbI	TGCGCA	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	718
NspI	RCATGY	2 cut(s)	524, 968
PagI	TCATGA	1 cut(s)	784
PctI	GAATGC	4 cut(s)	592, 604, 1106, 1306
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	7 cut(s)	352, 458, 779, 803, 878, 977, 1168
PkrI	GCNGC	7 cut(s)	100, 131, 134, 167, 170, 330, 1397
PleI	GAGTC	3 cut(s)	539, 729, 899
PpsI	GAGTC	3 cut(s)	539, 729, 899
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	1 cut(s)	1273
PstI	CTGCAG	1 cut(s)	134
PsuI	RGATCY	3 cut(s)	64, 616, 1121
PvuII	CAGCTG	2 cut(s)	863, 1337
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	318, 963
SaqAI	TTAA	2 cut(s)	872, 1427
SatI	GCNGC	7 cut(s)	99, 130, 133, 166, 169, 329, 1396
Sau3AI	GATC	6 cut(s)	64, 292, 304, 616, 885, 1121
SchI	GAGTC	3 cut(s)	539, 730, 899
ScrFI	CCNGG	1 cut(s)	641
SduI	GDGCHC	3 cut(s)	325, 371, 540
SetI	ASST	9 cut(s)	22, 231, 333, 686, 865, 1182, 1208, 1231, 1339
SfaNI	GCATC	2 cut(s)	101, 487
SfcI	CTRYAG	2 cut(s)	130, 969
SmiI	ATTTAAAT	1 cut(s)	873
SmiMI	CAYNNNNRTG	2 cut(s)	318, 963
SmlI	CTYRAG	1 cut(s)	1173
SmoI	CTYRAG	1 cut(s)	1173
Sse9I	AATT	6 cut(s)	239, 278, 512, 648, 761, 1075
SsiI	CCGC	6 cut(s)	99, 168, 245, 326, 1275, 1395
SspMI	CTAG	2 cut(s)	930, 1140
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	2 cut(s)	360, 444
SwaI	ATTTAAAT	1 cut(s)	873
TaaI	ACNGT	5 cut(s)	158, 299, 679, 1311, 1425
TaqI	TCGA	2 cut(s)	224, 888
TasI	AATT	6 cut(s)	239, 278, 512, 648, 761, 1075
TauI	GCSGC	3 cut(s)	101, 171, 1398
TfiI	GAWTC	7 cut(s)	352, 458, 779, 803, 878, 977, 1168
Tru1I	TTAA	2 cut(s)	872, 1427
Tru9I	TTAA	2 cut(s)	872, 1427
TscAI	CASTG	3 cut(s)	423, 684, 1284
TseFI	GTSAC	3 cut(s)	110, 158, 299
TseI	GCWGC	4 cut(s)	129, 132, 165, 328
Tsp45I	GTSAC	3 cut(s)	110, 158, 299
TspDTI	ATGAA	6 cut(s)	272, 275, 344, 497, 576, 1106
TspGWI	ACGGA	3 cut(s)	285, 864, 1097
TspRI	CASTG	3 cut(s)	423, 684, 1284
XapI	RAATTY	1 cut(s)	278
XbaI	TCTAGA	1 cut(s)	1139
XceI	RCATGY	2 cut(s)	524, 968
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	930, 1140
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.