MD16G1013100.v1.1

IAA-ALANINE RESISTANCE protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
1000887 .. 1005247
4361 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1013100.v1.1.491

Sequence Viewer

Length: 1479 bp
ATGGCGCTTTGTAAGAAAGGTTTGGTCTTGGTTGCTCTTGCTTTGGTTGTTGGGCTCTGTTCGGATCTGAGTTTTGTTTCTGGGTTCCCTGCATCTGCCGCTCACGAGCCTCACACTCACCACCAGGGTTGCAGCCATGCGCACCACCACCACCAGGACCACGGCCACAGTCACGGCAGCGGCCACGGCCACGACGAGGAGGAGGATAGATTACTGCCGAGATCGAAGCTTCCCGAGGAATTGGCGGAGGAGGAGGACATGAAGTTGTACGGATTTGAATTTCACCATCACGGTCACGATCACGATCACGAGCATTTTGGTGCTCTGCAGCTCTCAGTTGCTGGTCTCTGGATTCATTCCTTGGGGTGCTCGCTTTTGGTGAGCATGGCCTCCCTTATCTGCCTGATTATCTTGCCAGTGATGTTCGTACAGGGGAAACCATCCAAGGCAGTTGTTGATTCGTTGGCTATATTTGGGGCTGGAGCAATGTTGGGGGATGCTTTTCTTCATCAATTACCGCATGCCCTTGGAGGAGGGCACTCCGACTCGCATGACCACCATGAAGGCCATTCCCATTCTCATTCGCATGAGCATTCACATTCGCATTCTTTGGAAGATCTTTCAGTAGGATTATCCGTCCTGGCGGGAATTGTATTATTTCTTCTGGTAGAAAAGACAGTGAGGTATGTTGAGGAAAACTCTGGAGGAACTAATGCATGGAGTCACGGTCATCATCACCATCATCATAAGAACAGCAAGAAACTGAAGGATGATAATGATTCTCACGATGACTTGCATTCAGAATCTTCCAATGGAAAAGATGGAAGGAAGCTGAAGACATCTGATGGAGAAGTGGCATCTGATAGTTTAAACGATCCTTTGATCGAAAATACTCAACATGACTCTCATATTCGTAAGAGAAACACTAGGACTGGTGGGAGTGATGATAAACAAGATGTAGATGCTGCAAATGATTCCACTTCTGAGGCCAAGTCTGCAAAAGGGGAAACTACTCAATCACCCTCAAATCTTGTGTTTGGCTATCTCAATCTCTTCTCGGATGGTGTTCACAATTTTACAGATGGGATGGCTTTAGGGAGTGCGTTCCTGCTTCATGGATCTGTTGGTGGGTGGTCTAGAACTCTATTCTTGCTTGCGCATGAAATTCCCCAAGAGGTCGGTGATTTTGGTATTCTCGTAAGGTCTGGTTTCAGCGTATCTAAAGCTCTGCTCTTCAACTTTCTCTCAGCACTTGTGGCACTACTTGGAACCGCAATGGCTCTGATTTTGGGACAGAATGCAGGACGGTCATCTTTGATTGAGGGCTTTACAGCTGGTGGATTTATATACATTGCTGTTGCTGGAGTGCTTGCTGAAATGAACAGCAATGGCAGCTCATCGTTGAAAAGCACGGCTTTACAATTAACTGCATTGATACTTGGCATGGGAGTTGCACTATGTATATCACTTTTTGAATGA

Protein Analysis

493

Amino Acids

52.63

Weight (kDa)

5.93

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 115 - 488 9.6e-55 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011055)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 141, 1158
AccBSI CCGCTC 1 cut(s) 101
AciI CCGC 6 cut(s) 99, 180, 245, 518, 644, 1272
AclWI GGATC 3 cut(s) 72, 869, 1126
AcoI YGGCCR 3 cut(s) 163, 181, 187
AcsI RAATTY 2 cut(s) 278, 1164
AcuI CTGAAG 2 cut(s) 785, 854
AfaI GTAC 2 cut(s) 269, 429
AfiI CCNNNNNNNGG 2 cut(s) 154, 196
AgsI TTSAA 4 cut(s) 278, 1237, 1405, 1475
AjnI CCWGG 3 cut(s) 123, 153, 639
AluBI AGCT 6 cut(s) 229, 331, 832, 1226, 1334, 1395
AluI AGCT 6 cut(s) 229, 331, 832, 1226, 1334, 1395
Alw21I GWGCWC 2 cut(s) 325, 371
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 3 cut(s) 72, 869, 1126
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 6 cut(s) 163, 181, 187, 387, 565, 987
ApeKI GCWGC 5 cut(s) 132, 177, 328, 965, 1392
ApoI RAATTY 2 cut(s) 278, 1164
AspLEI GCGC 3 cut(s) 7, 142, 1159
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 6 cut(s) 110, 275, 391, 728, 1011, 1193
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 540
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 645, 677
BauI CACGAG 2 cut(s) 104, 308
BbsI GAAGAC 1 cut(s) 842
Bbv12I GWGCWC 2 cut(s) 325, 371
BbvI GCAGC 5 cut(s) 144, 189, 340, 952, 1404
BccI CCATC 8 cut(s) 294, 448, 747, 815, 839, 1055, 1076, 1081
BceAI ACGGC 4 cut(s) 178, 190, 202, 1428
BciT130I CCWGG 3 cut(s) 125, 155, 641
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 927, 1137
BfmI CTRYAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 616
BisI GCNGC 7 cut(s) 99, 133, 178, 181, 329, 966, 1393
BlsI GCNGC 7 cut(s) 100, 134, 179, 182, 330, 967, 1394
Bme1390I CCNGG 3 cut(s) 125, 155, 641
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 86, 1270
BmrFI CCNGG 3 cut(s) 125, 155, 641
BmsI GCATC 4 cut(s) 101, 487, 866, 952
BpiI GAAGAC 1 cut(s) 842
BplI GAGNNNNNCTC 2 cut(s) 683, 715
BpmI CTGGAG 3 cut(s) 501, 723, 1383
BsaBI GATNNNNATC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 7 cut(s) 124, 160, 184, 234, 360, 444, 526
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 196
Bse1I ACTGG 2 cut(s) 416, 937
Bse3DI GCAATG 4 cut(s) 492, 1281, 1350, 1393
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 3 cut(s) 125, 155, 641
BseDI CCNNGG 7 cut(s) 124, 160, 184, 234, 360, 444, 526
BseGI GGATG 5 cut(s) 440, 502, 775, 1066, 1092
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 154, 196
BseMI GCAATG 4 cut(s) 492, 1281, 1350, 1393
BseMII CTCAG 4 cut(s) 59, 348, 975, 1260
BseNI ACTGG 2 cut(s) 416, 937
BseRI GAGGAG 5 cut(s) 212, 215, 263, 266, 546
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 5 cut(s) 144, 189, 340, 952, 1404
BshFI GGCC 6 cut(s) 165, 183, 189, 389, 567, 989
BsiHKAI GWGCWC 2 cut(s) 325, 371
BsiHKCI CYCGRG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 1305
BslI CCNNNNNNNGG 2 cut(s) 154, 196
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 1305
BsmI GAATGC 4 cut(s) 592, 604, 796, 1303
BsnI GGCC 6 cut(s) 165, 183, 189, 389, 567, 989
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 4 cut(s) 57, 325, 371, 540
Bsp143I GATC 8 cut(s) 64, 221, 298, 304, 616, 874, 882, 1118
BspACI CCGC 6 cut(s) 99, 180, 245, 518, 644, 1272
BspANI GGCC 6 cut(s) 165, 183, 189, 389, 567, 989
BspCNI CTCAG 4 cut(s) 60, 347, 976, 1259
BspLI GGNNCC 2 cut(s) 86, 1270
BspMAI CTGCAG 1 cut(s) 330
BspPI GGATC 3 cut(s) 72, 869, 1126
BspQI GCTCTTC 1 cut(s) 1238
BspTNI GGTCTC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 101
BsrDI GCAATG 4 cut(s) 492, 1281, 1350, 1393
BsrI ACTGG 2 cut(s) 416, 937
BssECI CCNNGG 7 cut(s) 124, 160, 184, 234, 360, 444, 526
BssMI GATC 8 cut(s) 64, 221, 298, 304, 616, 874, 882, 1118
BssSI CACGAG 2 cut(s) 104, 308
BssT1I CCWWGG 3 cut(s) 360, 444, 526
Bst2BI CACGAG 2 cut(s) 104, 308
Bst2UI CCWGG 3 cut(s) 125, 155, 641
Bst4CI ACNGT 5 cut(s) 170, 293, 679, 728, 1308
Bst6I CTCTTC 2 cut(s) 1058, 1238
BstC8I GCNNGC 4 cut(s) 371, 522, 1155, 1371
BstDEI CTNAG 4 cut(s) 68, 334, 984, 1246
BstDSI CCRYGG 2 cut(s) 160, 184
BstF5I GGATG 5 cut(s) 440, 502, 775, 1066, 1092
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 142, 1159
BstKTI GATC 8 cut(s) 67, 224, 301, 307, 619, 877, 885, 1121
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 8 cut(s) 64, 221, 298, 304, 616, 874, 882, 1118
BstMWI GCNNNNNNNGC 5 cut(s) 98, 186, 995, 1256, 1392
BstNI CCWGG 3 cut(s) 125, 155, 641
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 3 cut(s) 123, 153, 639
BstSFI CTRYAG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 540
BstV1I GCAGC 5 cut(s) 144, 189, 340, 952, 1404
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 3 cut(s) 64, 616, 1118
BstYI RGATCY 3 cut(s) 64, 616, 1118
BsuRI GGCC 6 cut(s) 165, 183, 189, 389, 567, 989
BtgI CCRYGG 2 cut(s) 160, 184
BtsCI GGATG 5 cut(s) 440, 502, 775, 1066, 1092
BtsIMutI CAGTG 2 cut(s) 423, 684
Cac8I GCNNGC 4 cut(s) 371, 522, 1155, 1371
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 3 cut(s) 7, 142, 1159
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 268, 428
CspCI CAANNNNNGTGG 2 cut(s) 110, 145
CviQI GTAC 2 cut(s) 268, 428
DdeI CTNAG 4 cut(s) 68, 334, 984, 1246
DpnI GATC 8 cut(s) 66, 223, 300, 306, 618, 876, 884, 1120
DpnII GATC 8 cut(s) 64, 221, 298, 304, 616, 874, 882, 1118
DraI TTTAAA 1 cut(s) 870
EaeI YGGCCR 3 cut(s) 163, 181, 187
Eam1104I CTCTTC 2 cut(s) 1058, 1238
EarI CTCTTC 2 cut(s) 1058, 1238
EciI GGCGGA 1 cut(s) 260
Eco130I CCWWGG 3 cut(s) 360, 444, 526
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 785, 854
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 3 cut(s) 123, 153, 639
EcoT14I CCWWGG 3 cut(s) 360, 444, 526
EcoT22I ATGCAT 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 3 cut(s) 360, 444, 526
FalI AAGNNNNNCTT 2 cut(s) 1399, 1431
FaqI GGGAC 1 cut(s) 1305
FauI CCCGC 1 cut(s) 637
Fnu4HI GCNGC 7 cut(s) 99, 133, 178, 181, 329, 966, 1393
FokI GGATG 5 cut(s) 427, 509, 782, 1073, 1099
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 7 cut(s) 99, 133, 178, 181, 329, 966, 1393
FspAI RTGCGCAY 1 cut(s) 141
FspBI CTAG 2 cut(s) 927, 1137
FspI TGCGCA 2 cut(s) 141, 1158
GlaI GCGC 3 cut(s) 6, 141, 1158
GluI GCNGC 7 cut(s) 99, 133, 178, 181, 329, 966, 1393
GsuI CTGGAG 3 cut(s) 501, 723, 1383
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 6 cut(s) 165, 183, 189, 389, 567, 989
HhaI GCGC 3 cut(s) 7, 142, 1159
Hin6I GCGC 3 cut(s) 5, 140, 1157
HinP1I GCGC 3 cut(s) 5, 140, 1157
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 8 cut(s) 352, 458, 545, 721, 779, 803, 902, 974
HphI GGTGA 6 cut(s) 110, 275, 391, 728, 1011, 1193
Hpy166II GTNNAC 1 cut(s) 1069
Hpy188I TCNGA 9 cut(s) 64, 69, 544, 802, 844, 862, 985, 1060, 1284
Hpy188III TCNNGA 9 cut(s) 104, 233, 296, 302, 308, 349, 702, 785, 1137
Hpy8I GTNNAC 1 cut(s) 1069
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 557, 760, 819
HpyCH4III ACNGT 5 cut(s) 170, 293, 679, 728, 1308
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 186, 995, 1256, 1392
HpyF3I CTNAG 4 cut(s) 68, 334, 984, 1246
HspAI GCGC 3 cut(s) 5, 140, 1157
Kzo9I GATC 8 cut(s) 64, 221, 298, 304, 616, 874, 882, 1118
LguI GCTCTTC 1 cut(s) 1238
LmnI GCTCC 1 cut(s) 482
Lsp1109I GCAGC 5 cut(s) 144, 189, 340, 952, 1404
LweI GCATC 4 cut(s) 101, 487, 866, 952
MaeI CTAG 2 cut(s) 927, 1137
MaeIII GTNAC 3 cut(s) 170, 293, 722
MalI GATC 8 cut(s) 66, 223, 300, 306, 618, 876, 884, 1120
MbiI CCGCTC 1 cut(s) 101
MboI GATC 8 cut(s) 64, 221, 298, 304, 616, 874, 882, 1118
MboII GAAGA 7 cut(s) 497, 626, 653, 798, 847, 1045, 1225
MflI RGATCY 3 cut(s) 64, 616, 1118
MhlI GDGCHC 4 cut(s) 57, 325, 371, 540
MluCI AATT 7 cut(s) 239, 278, 512, 648, 1072, 1164, 1421
MlyI GAGTC 3 cut(s) 539, 730, 896
MmeI TCCRAC 1 cut(s) 567
Mph1103I ATGCAT 1 cut(s) 718
MseI TTAA 2 cut(s) 869, 1424
MslI CAYNNNNRTG 2 cut(s) 318, 585
MspA1I CMGCKG 2 cut(s) 180, 1334
MspR9I CCNGG 3 cut(s) 125, 155, 641
MssI GTTTAAAC 1 cut(s) 870
Mva1269I GAATGC 4 cut(s) 592, 604, 796, 1303
MvaI CCWGG 3 cut(s) 125, 155, 641
MwoI GCNNNNNNNGC 5 cut(s) 98, 186, 995, 1256, 1392
NdeII GATC 8 cut(s) 64, 221, 298, 304, 616, 874, 882, 1118
NlaIV GGNNCC 2 cut(s) 86, 1270
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 3 cut(s) 170, 293, 722
NsbI TGCGCA 2 cut(s) 141, 1158
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 1 cut(s) 524
PaeI GCATGC 1 cut(s) 524
PciSI GCTCTTC 1 cut(s) 1238
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 4 cut(s) 592, 604, 796, 1303
PfeI GAWTC 5 cut(s) 352, 458, 779, 803, 974
PkrI GCNGC 7 cut(s) 100, 134, 179, 182, 330, 967, 1394
PleI GAGTC 3 cut(s) 539, 729, 896
PmeI GTTTAAAC 1 cut(s) 870
PpsI GAGTC 3 cut(s) 539, 729, 896
Psp6I CCWGG 3 cut(s) 123, 153, 639
PspGI CCWGG 3 cut(s) 123, 153, 639
PspN4I GGNNCC 2 cut(s) 86, 1270
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 3 cut(s) 64, 616, 1118
PvuII CAGCTG 1 cut(s) 1334
RsaI GTAC 2 cut(s) 269, 429
RsaNI GTAC 2 cut(s) 268, 428
RseI CAYNNNNRTG 2 cut(s) 318, 585
SapI GCTCTTC 1 cut(s) 1238
SaqAI TTAA 2 cut(s) 869, 1424
SatI GCNGC 7 cut(s) 99, 133, 178, 181, 329, 966, 1393
Sau3AI GATC 8 cut(s) 64, 221, 298, 304, 616, 874, 882, 1118
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 3 cut(s) 539, 730, 896
ScrFI CCNGG 3 cut(s) 125, 155, 641
SduI GDGCHC 4 cut(s) 57, 325, 371, 540
SfaNI GCATC 4 cut(s) 101, 487, 866, 952
SfcI CTRYAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 2 cut(s) 318, 585
SphI GCATGC 1 cut(s) 524
Sse9I AATT 7 cut(s) 239, 278, 512, 648, 1072, 1164, 1421
SsiI CCGC 6 cut(s) 99, 180, 245, 518, 644, 1272
SspMI CTAG 2 cut(s) 927, 1137
StyD4I CCNGG 3 cut(s) 123, 153, 639
StyI CCWWGG 3 cut(s) 360, 444, 526
TaaI ACNGT 5 cut(s) 170, 293, 679, 728, 1308
TaqI TCGA 2 cut(s) 224, 885
TasI AATT 7 cut(s) 239, 278, 512, 648, 1072, 1164, 1421
TauI GCSGC 2 cut(s) 101, 183
TfiI GAWTC 5 cut(s) 352, 458, 779, 803, 974
Tru1I TTAA 2 cut(s) 869, 1424
Tru9I TTAA 2 cut(s) 869, 1424
TscAI CASTG 2 cut(s) 423, 684
TseFI GTSAC 3 cut(s) 170, 293, 722
TseI GCWGC 5 cut(s) 132, 177, 328, 965, 1392
Tsp45I GTSAC 3 cut(s) 170, 293, 722
TspDTI ATGAA 7 cut(s) 275, 344, 497, 576, 1103, 1176, 1394
TspGWI ACGGA 2 cut(s) 285, 625
TspRI CASTG 2 cut(s) 423, 684
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 2 cut(s) 278, 1164
XbaI TCTAGA 1 cut(s) 1136
XceI RCATGY 1 cut(s) 524
XspI CTAG 2 cut(s) 927, 1137
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.