Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011055

Physical Location & Seq

Genomic Coordinates Forward (+)

31865407 .. 31870877

Gene Structure 5471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G338200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGCGTTTTGTACGAAAGGTACGGTCTTGGTTGTTGCTTTGGTTCTTGGGCTCTGTTTGGATCTGAGATTTGCTTCTGGGTCTTGTGCATCGGCGGCTCACGAGTCTCCTCACCACCACCACCACTGCGATCATGGGCATGACCATGACCACGACCACGACCACCACGGGGAGAGCTTGTTGGGGTCAAAGCTTCCTGAGGAATTGGCTGAGGAGGAGGATATGAAATTGTACGGATTTGGATTTGATCAACATGGCCAGGATCATGGTCATGATCACGAGCATTTTGGTGCTTTGCAGCTCTCAGTTACCGGTCTCTGGTTTCATTCCTTGGGCTGCTCGCTTTTGGTGAGTATGGCTTCCCTTATTTGCCTGATTATCTTGCCAGTAATATTCGTACAGGGGAAACCATCCAAGGCAGTTGTTGATTCGTTGGCTTTATTTGGGGCTGGAGCTATGTTAGGGGATGCTTTCCTTCATCAATTACCACATGCTTTTGGTGGAGGACACTCCAGCTCACATGACGACCATGTAGGCCATTCCCATCATGATCATATTGGACATGAGCATTCACATTCACATTCTTTGAAAGATCTTTCTGTAGGATTATCCATCCTGGCGGGAATTGTATTATTTCTTCTGGTAGAAAAGTTGGTGAGGTATGTTGAGGAAAACTCTGGAGGAAGTAGTGCATGGAGTCATGGTCATCATCACCATCATCATAAGACCAACAAGAAATTGAAAGATGATAATGATTCTCATGATGACTTGCAGTCAGAATCTTCCAGTGGAAAAGATGGAAGGAAGCTGAAGATGTCATCTGAAGAAGAGGCGGCAGCTGAAGTTTCAAATGATTCTTTGATGGAAAATAATCGACATGACTCTCATATTCGTAAGAGAAACATTACGACTGGTGATAAACAAGACGTAGCTGCTGCAGATGACTCCAACCGTGATGCTAAGTCCTCAGATGGAGAACCTACTCGATCACCATCAAATCTTGTGTTTGGTTATCTCAATCTCTTCTCTGATGGTGTTCACAATTTTACGGATGGGATGGCTTTAGGAAGTGCTTTTCTGCTTCATGGATCTGTCGGTGGGTGGTCTAGAACTCTATTCTTGCTTGCGCACGAGATTCCTCAAGAGGTTGGTGATTTTGGTATTCTTGTAAGGTCTGGTTTCACTGTCTCCAAAGCTCTGTTTTTCAACTTTCTCTCAGCACTTGTGGCACTAGTTGGAACCGCAATGGCTCTGCTTCTGGGCAAGAATCCAGGACAGTCATCTTTGATTGAGGGATTTACAGCTGGTGGATTTATATACATTGCTGTTGCTGGAGTGCTTGCAGAAATGAACAACAATGGCAGCTCATCATTGAAAAGCACGGCATTCCAATTAACTGCATTGATACTCGGCATGGGAGTTGCCCTTTGTATTTCTCTTTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

483

Amino Acids

51.7

Weight (kDa)

5.86

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68100 AT1G68100
fragaria_vesca	FvH4_4g26130 FvH4_4g26130
malus_domestica	MD13G1015600.v1.1 MD16G1013100.v1.1
prunus_persica	Prupe.1G338200_v2.0.a1
pyrus_communis	pycom13g01320 pycom16g01230
rosa_chinensis	RchiOBHm_Chr4g0433701
rosa_laevigata	RLG00000006737
rosa_multiflora	Rmu_sc0000312.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375140
rosa_rugosa	Rorug04G0270900.1 Rorug04G0271000.1
rosa_samantha	Rh4AG325300 Rh4BG333100 Rh4CG348300 Rh4DG329700
rosa_wichuraiana	Rw4G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1128
AciI	CCGC	4 cut(s)	95, 620, 833, 1242
AclWI	GGATC	3 cut(s)	69, 270, 1096
AcoI	YGGCCR	1 cut(s)	256
AcuI	CTGAAG	3 cut(s)	830, 843, 861
AfaI	GTAC	4 cut(s)	13, 22, 233, 399
AfiI	CCNNNNNNNGG	2 cut(s)	169, 318
AgeI	ACCGGT	1 cut(s)	311
AgsI	TTSAA	6 cut(s)	589, 742, 849, 1207, 1375, 1445
AhdI	GACNNNNNGTC	1 cut(s)	772
AhlI	ACTAGT	1 cut(s)	1231
AjnI	CCWGG	3 cut(s)	258, 615, 1270
Alw26I	GTCTC	3 cut(s)	111, 320, 1192
AlwI	GGATC	3 cut(s)	69, 270, 1096
AoxI	GGCC	2 cut(s)	256, 535
ApeKI	GCWGC	6 cut(s)	298, 336, 836, 932, 935, 1362
AsiGI	ACCGGT	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	1129
AsuHPI	GGTGA	7 cut(s)	104, 361, 667, 704, 926, 981, 1163
AxyI	CCTNAGG	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	54
BarI	GAAGNNNNNNTAC	2 cut(s)	621, 653
BauI	CACGAG	3 cut(s)	101, 278, 1130
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	6 cut(s)	310, 323, 848, 919, 922, 1374
BceAI	ACGGC	1 cut(s)	1398
BciT130I	CCWGG	3 cut(s)	260, 617, 1272
BclI	TGATCA	3 cut(s)	247, 274, 550
BcoDI	GTCTC	3 cut(s)	111, 320, 1192
BcuI	ACTAGT	1 cut(s)	1231
BfaI	CTAG	2 cut(s)	1107, 1232
BfmI	CTRYAG	2 cut(s)	600, 936
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	8 cut(s)	96, 299, 337, 834, 837, 933, 936, 1363
BlsI	GCNGC	8 cut(s)	97, 300, 338, 835, 838, 934, 937, 1364
Bme1390I	CCNGG	3 cut(s)	260, 617, 1272
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	1240
BmrFI	CCNGG	3 cut(s)	260, 617, 1272
BmsI	GCATC	3 cut(s)	98, 457, 946
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpmI	CTGGAG	4 cut(s)	471, 496, 699, 1353
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	1125
BsaBI	GATNNNNATC	1 cut(s)	991
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	166, 330, 414
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 688, 718
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 318
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	386, 786, 916
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	2 cut(s)	1251, 1320
Bse8I	GATNNNNATC	1 cut(s)	991
BseBI	CCWGG	3 cut(s)	260, 617, 1272
BseDI	CCNNGG	3 cut(s)	166, 330, 414
BseGI	GGATG	5 cut(s)	410, 472, 612, 1057, 1062
BseJI	GATNNNNATC	1 cut(s)	991
BseLI	CCNNNNNNNGG	2 cut(s)	169, 318
BseMI	GCAATG	2 cut(s)	1251, 1320
BseMII	CTCAG	6 cut(s)	56, 189, 201, 318, 981, 1230
BseNI	ACTGG	3 cut(s)	386, 786, 916
BseRI	GAGGAG	3 cut(s)	99, 227, 230
BseXI	GCAGC	6 cut(s)	310, 323, 848, 919, 922, 1374
BshFI	GGCC	2 cut(s)	258, 537
BshTI	ACCGGT	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	169, 318
BsmAI	GTCTC	3 cut(s)	111, 320, 1192
BsmI	GAATGC	2 cut(s)	568, 1385
BsnI	GGCC	2 cut(s)	258, 537
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	9 cut(s)	61, 130, 247, 262, 274, 550, 592, 986, 1088
BspACI	CCGC	4 cut(s)	95, 620, 833, 1242
BspANI	GGCC	2 cut(s)	258, 537
BspCNI	CTCAG	6 cut(s)	57, 190, 202, 317, 980, 1229
BspHI	TCATGA	3 cut(s)	271, 547, 760
BspLI	GGNNCC	1 cut(s)	1240
BspMAI	CTGCAG	1 cut(s)	940
BspPI	GGATC	3 cut(s)	69, 270, 1096
BspTNI	GGTCTC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	1251, 1320
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	3 cut(s)	386, 786, 916
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	3 cut(s)	166, 330, 414
BssMI	GATC	9 cut(s)	61, 130, 247, 262, 274, 550, 592, 986, 1088
BssSI	CACGAG	3 cut(s)	101, 278, 1130
BssT1I	CCWWGG	2 cut(s)	330, 414
Bst2BI	CACGAG	3 cut(s)	101, 278, 1130
Bst2UI	CCWGG	3 cut(s)	260, 617, 1272
Bst4CI	ACNGT	4 cut(s)	25, 953, 1186, 1278
Bst6I	CTCTTC	2 cut(s)	822, 1028
BstC8I	GCNNGC	3 cut(s)	341, 1125, 1341
BstDEI	CTNAG	7 cut(s)	65, 198, 210, 304, 960, 967, 1216
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	5 cut(s)	410, 472, 612, 1057, 1062
BstHHI	GCGC	1 cut(s)	1129
BstKTI	GATC	9 cut(s)	64, 133, 250, 265, 277, 553, 595, 989, 1091
BstMAI	GTCTC	3 cut(s)	111, 320, 1192
BstMBI	GATC	9 cut(s)	61, 130, 247, 262, 274, 550, 592, 986, 1088
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 1226
BstNI	CCWGG	3 cut(s)	260, 617, 1272
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	3 cut(s)	258, 615, 1270
BstSFI	CTRYAG	2 cut(s)	600, 936
BstV1I	GCAGC	6 cut(s)	310, 323, 848, 919, 922, 1374
BstX2I	RGATCY	3 cut(s)	61, 592, 1088
BstXI	CCANNNNNNTGG	1 cut(s)	266
BstYI	RGATCY	3 cut(s)	61, 592, 1088
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	258, 537
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	5 cut(s)	410, 472, 612, 1057, 1062
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	3 cut(s)	124, 793, 1182
Cac8I	GCNNGC	3 cut(s)	341, 1125, 1341
CciI	TCATGA	3 cut(s)	271, 547, 760
CfoI	GCGC	1 cut(s)	1129
Cfr10I	RCCGGY	1 cut(s)	311
Csp6I	GTAC	4 cut(s)	12, 21, 232, 398
CspAI	ACCGGT	1 cut(s)	311
CviQI	GTAC	4 cut(s)	12, 21, 232, 398
DdeI	CTNAG	7 cut(s)	65, 198, 210, 304, 960, 967, 1216
DpnI	GATC	9 cut(s)	63, 132, 249, 264, 276, 552, 594, 988, 1090
DpnII	GATC	9 cut(s)	61, 130, 247, 262, 274, 550, 592, 986, 1088
DriI	GACNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	822, 1028
Eam1105I	GACNNNNNGTC	1 cut(s)	772
EarI	CTCTTC	2 cut(s)	822, 1028
Eco130I	CCWWGG	2 cut(s)	330, 414
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	320
Eco57I	CTGAAG	3 cut(s)	830, 843, 861
Eco81I	CCTNAGG	1 cut(s)	198
EcoRII	CCWGG	3 cut(s)	258, 615, 1270
EcoT14I	CCWWGG	2 cut(s)	330, 414
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	2 cut(s)	330, 414
FauI	CCCGC	1 cut(s)	613
FbaI	TGATCA	3 cut(s)	247, 274, 550
Fnu4HI	GCNGC	8 cut(s)	96, 299, 337, 834, 837, 933, 936, 1363
FokI	GGATG	5 cut(s)	397, 479, 599, 1064, 1069
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	8 cut(s)	96, 299, 337, 834, 837, 933, 936, 1363
FspBI	CTAG	2 cut(s)	1107, 1232
FspI	TGCGCA	1 cut(s)	1128
GlaI	GCGC	1 cut(s)	1128
GluI	GCNGC	8 cut(s)	96, 299, 337, 834, 837, 933, 936, 1363
GsuI	CTGGAG	4 cut(s)	471, 496, 699, 1353
HaeIII	GGCC	2 cut(s)	258, 537
HapII	CCGG	1 cut(s)	312
HhaI	GCGC	1 cut(s)	1129
Hin6I	GCGC	1 cut(s)	1127
HinP1I	GCGC	1 cut(s)	1127
HindIII	AAGCTT	1 cut(s)	191
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	7 cut(s)	104, 361, 667, 704, 926, 981, 1163
Hpy166II	GTNNAC	1 cut(s)	1039
Hpy188I	TCNGA	5 cut(s)	66, 778, 823, 970, 1030
Hpy188III	TCNNGA	9 cut(s)	101, 197, 272, 278, 548, 678, 761, 1107, 1142
Hpy8I	GTNNAC	1 cut(s)	1039
HpyAV	CCTTC	2 cut(s)	485, 795
HpyCH4III	ACNGT	4 cut(s)	25, 953, 1186, 1278
HpyCH4IV	ACGT	1 cut(s)	927
HpyCH4V	TGCA	7 cut(s)	89, 298, 692, 772, 938, 1343, 1400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 1226
HpyF3I	CTNAG	7 cut(s)	65, 198, 210, 304, 960, 967, 1216
HpySE526I	ACGT	1 cut(s)	927
HspAI	GCGC	1 cut(s)	1127
Ksp22I	TGATCA	3 cut(s)	247, 274, 550
Kzo9I	GATC	9 cut(s)	61, 130, 247, 262, 274, 550, 592, 986, 1088
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	6 cut(s)	310, 323, 848, 919, 922, 1374
LweI	GCATC	3 cut(s)	98, 457, 946
MaeI	CTAG	2 cut(s)	1107, 1232
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	9 cut(s)	63, 132, 249, 264, 276, 552, 594, 988, 1090
MboI	GATC	9 cut(s)	61, 130, 247, 262, 274, 550, 592, 986, 1088
MboII	GAAGA	6 cut(s)	629, 774, 823, 836, 839, 1015
MflI	RGATCY	3 cut(s)	61, 592, 1088
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	258
MluCI	AATT	7 cut(s)	203, 227, 482, 624, 737, 1042, 1391
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	4 cut(s)	113, 706, 875, 938
MmeI	TCCRAC	2 cut(s)	972, 1216
Mox20I	TGGCCA	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	1 cut(s)	1394
MslI	CAYNNNNRTG	4 cut(s)	138, 144, 270, 288
Msp20I	TGGCCA	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	839, 1304
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	3 cut(s)	260, 617, 1272
Mva1269I	GAATGC	2 cut(s)	568, 1385
MvaI	CCWGG	3 cut(s)	260, 617, 1272
MwoI	GCNNNNNNNGC	2 cut(s)	95, 1226
NdeII	GATC	9 cut(s)	61, 130, 247, 262, 274, 550, 592, 986, 1088
NlaIV	GGNNCC	1 cut(s)	1240
NmeAIII	GCCGAG	1 cut(s)	1389
NsbI	TGCGCA	1 cut(s)	1128
NspI	RCATGY	1 cut(s)	494
PagI	TCATGA	3 cut(s)	271, 547, 760
PctI	GAATGC	2 cut(s)	568, 1385
PfeI	GAWTC	6 cut(s)	428, 755, 779, 854, 1135, 1267
PfoI	TCCNGGA	1 cut(s)	1270
PinAI	ACCGGT	1 cut(s)	311
PkrI	GCNGC	8 cut(s)	97, 300, 338, 835, 838, 934, 937, 1364
PleI	GAGTC	4 cut(s)	112, 705, 875, 938
PpsI	GAGTC	4 cut(s)	112, 705, 875, 938
Psp6I	CCWGG	3 cut(s)	258, 615, 1270
PspGI	CCWGG	3 cut(s)	258, 615, 1270
PspN4I	GGNNCC	1 cut(s)	1240
PstI	CTGCAG	1 cut(s)	940
PsuI	RGATCY	3 cut(s)	61, 592, 1088
PvuII	CAGCTG	2 cut(s)	839, 1304
RsaI	GTAC	4 cut(s)	13, 22, 233, 399
RsaNI	GTAC	4 cut(s)	12, 21, 232, 398
RseI	CAYNNNNRTG	4 cut(s)	138, 144, 270, 288
SaqAI	TTAA	1 cut(s)	1394
SatI	GCNGC	8 cut(s)	96, 299, 337, 834, 837, 933, 936, 1363
Sau3AI	GATC	9 cut(s)	61, 130, 247, 262, 274, 550, 592, 986, 1088
SchI	GAGTC	4 cut(s)	113, 706, 875, 938
ScrFI	CCNGG	3 cut(s)	260, 617, 1272
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	3 cut(s)	98, 457, 946
SfcI	CTRYAG	2 cut(s)	600, 936
SmiMI	CAYNNNNRTG	4 cut(s)	138, 144, 270, 288
SmlI	CTYRAG	1 cut(s)	1140
SmoI	CTYRAG	1 cut(s)	1140
SpeI	ACTAGT	1 cut(s)	1231
Sse9I	AATT	7 cut(s)	203, 227, 482, 624, 737, 1042, 1391
SsiI	CCGC	4 cut(s)	95, 620, 833, 1242
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	2 cut(s)	1107, 1232
StyD4I	CCNGG	3 cut(s)	258, 615, 1270
StyI	CCWWGG	2 cut(s)	330, 414
TaaI	ACNGT	4 cut(s)	25, 953, 1186, 1278
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	2 cut(s)	874, 985
TasI	AATT	7 cut(s)	203, 227, 482, 624, 737, 1042, 1391
TauI	GCSGC	2 cut(s)	98, 836
TfiI	GAWTC	6 cut(s)	428, 755, 779, 854, 1135, 1267
Tru1I	TTAA	1 cut(s)	1394
Tru9I	TTAA	1 cut(s)	1394
TscAI	CASTG	3 cut(s)	131, 793, 1189
TseI	GCWGC	6 cut(s)	298, 336, 836, 932, 935, 1362
TspDTI	ATGAA	5 cut(s)	239, 314, 467, 1073, 1364
TspGWI	ACGGA	2 cut(s)	249, 1064
TspRI	CASTG	3 cut(s)	131, 793, 1189
XbaI	TCTAGA	1 cut(s)	1106
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	1107, 1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.