Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011055

Physical Location & Seq

Genomic Coordinates Forward (+)

63717741 .. 63722293

Gene Structure 4553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG325300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAGTTGCGTAAGAGACGTATGTTGTCTGTTGTTGCTGCTTTGGTTCTTGGGCTGTGTTTGGATCTGAGCTTGGTTTGTGCATCTGGGGAGGCTCATGTTCACACCCACCACTGTAATCATGGCCATGATGACCATGACCATCATGGCCATGGTCACCAAGGCCAGAGCTTGGTGGGGTCGAAGCTTCTTCCGGAGGAATTGGCGGAGGAGGAGGATATGAAGTTGTATGGATTTGGGTTTCAACATGACCATGAGCATTTTGGTTCTTTGCAGCTCTCGGTGACTGGTCTTTGGATTCATTCATTGGGATGCTCGTTTTTGGTCAGCATGGCTTCCCTCATTTGCCTGATTATCTTGCCAGTAATATTCGTACAGGGGAAACCATCCAAGGCAGTTGTTGATTCGTTGGCTTTATTTGGGGCTGGAGCTATGTTAGGGGATGCTTTCCTTCATCAATTACCACATGCTTTTGGTGGAGGGCACTCACATGACGACCATGTAGGCCATGATCATCACGATCATAGTGAACATGAGCATTCACATGCACATTCTTTGGAAGATCTTTCTGTAGGAATTGCTGTCCTGGCGGGAATTGTATTGTTTCTTCTGGTAGAAAAGATGGTGAGGTATGTTGAGGAACACTCTGGAGGAACTAATGCATTGGGTCATGGTCATCATCACCACCATCACAGCAAGAAATTGATGGATGACAACGATTCTCATGATGACTTGACATCAGAATCTTCCACTGGAAAAGATGGACGGAAGCCAAATGTGTCATCTGAAGGAAAAGTGGAAAGTGAAGTTTTAAATGATTCTTTGAAGGAAAATTCTCATCTTGATTCTCAATTGCGTAAGAGAAACACTGCCACAGGTGATAGGGATAATAAACAAGATGTTCATGCTGCAGAAGACTCGAGTCATGATACTAAATCGTTAGATGTAGAACCTACACGATCACCCAACAATCTTGTGTTTGGTTATCTCAATCTCTTCTCTGACGGTGTTGTATGTGGTTCTTATTTACAGTCAATCTTGTACTTATTCAAACAAAAACTGTGGTTCATGATACAGGGTTATTATTGTAATAAAAAGCGTTGTCTTTCCACTGCAGCACAATTTCACAGATGGGATGGCTTTAGGAAGTGCTTTCCTGCTTCATGGTACTGTTGGTGGGTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

395

Amino Acids

43.96

Weight (kDa)

6.11

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	97 - 276	5.9e-19	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68100 AT1G68100
fragaria_vesca	FvH4_4g26130 FvH4_4g26130
malus_domestica	MD13G1015600.v1.1 MD16G1013100.v1.1
prunus_persica	Prupe.1G338200_v2.0.a1
pyrus_communis	pycom13g01320 pycom16g01230
rosa_chinensis	RchiOBHm_Chr4g0433701
rosa_laevigata	RLG00000006737
rosa_multiflora	Rmu_sc0000312.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375140
rosa_rugosa	Rorug04G0270900.1 Rorug04G0271000.1
rosa_samantha	Rh4AG325300 Rh4BG333100 Rh4CG348300 Rh4DG329700
rosa_wichuraiana	Rw4G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	2 cut(s)	206, 590
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	2 cut(s)	124, 148
AcsI	RAATTY	1 cut(s)	832
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	3 cut(s)	375, 1043, 1169
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	245, 826, 1051
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	5 cut(s)	72, 171, 187, 277, 431
AluI	AGCT	5 cut(s)	72, 171, 187, 277, 431
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	919
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	4 cut(s)	124, 148, 163, 505
ApeKI	GCWGC	4 cut(s)	38, 274, 908, 1115
ApoI	RAATTY	1 cut(s)	832
AsuHPI	GGTGA	6 cut(s)	149, 295, 637, 674, 890, 954
AvaI	CYCGRG	1 cut(s)	919
BaeGI	GKGCMC	1 cut(s)	486
BalI	TGGCCA	2 cut(s)	126, 150
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BbsI	GAAGAC	1 cut(s)	921
BbvI	GCAGC	4 cut(s)	25, 286, 895, 1127
BccI	CCATC	8 cut(s)	150, 394, 616, 696, 700, 755, 1125, 1130
BcgI	CGANNNNNNTGC	2 cut(s)	900, 934
BciT130I	CCWGG	1 cut(s)	587
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	1 cut(s)	1186
BfmI	CTRYAG	3 cut(s)	570, 909, 1113
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	4 cut(s)	39, 275, 909, 1116
BlsI	GCNGC	4 cut(s)	40, 276, 910, 1117
Bme1390I	CCNGG	1 cut(s)	587
BmeT110I	CYCGRG	1 cut(s)	919
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	3 cut(s)	92, 302, 433
BoxI	GACNNNNGTC	1 cut(s)	921
BpiI	GAAGAC	1 cut(s)	921
BplI	GAGNNNNNCTC	2 cut(s)	629, 661
BpmI	CTGGAG	2 cut(s)	447, 669
BsaJI	CCNNGG	3 cut(s)	151, 160, 390
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	3 cut(s)	292, 362, 757
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	3 cut(s)	151, 160, 390
BseGI	GGATG	5 cut(s)	317, 386, 448, 715, 1141
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	3 cut(s)	292, 362, 757
BseRI	GAGGAG	2 cut(s)	224, 227
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	4 cut(s)	25, 286, 895, 1127
BshFI	GGCC	4 cut(s)	126, 150, 165, 507
BsiHKCI	CYCGRG	1 cut(s)	919
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	10
BsmBI	CGTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	4 cut(s)	126, 150, 165, 507
BsoBI	CYCGRG	1 cut(s)	919
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	5 cut(s)	64, 511, 520, 562, 959
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	2 cut(s)	206, 590
BspANI	GGCC	4 cut(s)	126, 150, 165, 507
BspCNI	CTCAG	1 cut(s)	60
BspEI	TCCGGA	1 cut(s)	193
BspHI	TCATGA	3 cut(s)	724, 925, 1068
BspMAI	CTGCAG	2 cut(s)	913, 1117
BspPI	GGATC	1 cut(s)	72
BsrI	ACTGG	3 cut(s)	292, 362, 757
BssECI	CCNNGG	3 cut(s)	151, 160, 390
BssMI	GATC	5 cut(s)	64, 511, 520, 562, 959
BssT1I	CCWWGG	3 cut(s)	151, 160, 390
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	5 cut(s)	116, 1007, 1032, 1062, 1172
Bst6I	CTCTTC	1 cut(s)	1001
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	151
BstEII	GGTNACC	1 cut(s)	155
BstF5I	GGATG	5 cut(s)	317, 386, 448, 715, 1141
BstKTI	GATC	5 cut(s)	67, 514, 523, 565, 962
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	5 cut(s)	64, 511, 520, 562, 959
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	2 cut(s)	470, 548
BstPAI	GACNNNNGTC	1 cut(s)	921
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	3 cut(s)	570, 909, 1113
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	4 cut(s)	25, 286, 895, 1127
BstV2I	GAAGAC	1 cut(s)	921
BstX2I	RGATCY	2 cut(s)	64, 562
BstYI	RGATCY	2 cut(s)	64, 562
BsuRI	GGCC	4 cut(s)	126, 150, 165, 507
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	5 cut(s)	317, 386, 448, 715, 1141
BtsI	GCAGTG	2 cut(s)	867, 1110
BtsIMutI	CAGTG	4 cut(s)	112, 750, 867, 1110
CciI	TCATGA	3 cut(s)	724, 925, 1068
Csp6I	GTAC	3 cut(s)	374, 1042, 1168
CspCI	CAANNNNNGTGG	2 cut(s)	1043, 1078
CviQI	GTAC	3 cut(s)	374, 1042, 1168
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	5 cut(s)	66, 513, 522, 564, 961
DpnII	GATC	5 cut(s)	64, 511, 520, 562, 959
DraI	TTTAAA	1 cut(s)	813
EaeI	YGGCCR	2 cut(s)	124, 148
Eam1104I	CTCTTC	1 cut(s)	1001
EarI	CTCTTC	1 cut(s)	1001
EciI	GGCGGA	1 cut(s)	221
Eco130I	CCWWGG	3 cut(s)	151, 160, 390
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	919
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	3 cut(s)	151, 160, 390
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	3 cut(s)	151, 160, 390
Esp3I	CGTCTC	1 cut(s)	10
FauI	CCCGC	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	4 cut(s)	39, 275, 909, 1116
FokI	GGATG	5 cut(s)	324, 373, 455, 722, 1148
Fsp4HI	GCNGC	4 cut(s)	39, 275, 909, 1116
FspBI	CTAG	1 cut(s)	1186
GluI	GCNGC	4 cut(s)	39, 275, 909, 1116
GsuI	CTGGAG	2 cut(s)	447, 669
HaeIII	GGCC	4 cut(s)	126, 150, 165, 507
HapII	CCGG	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	8 cut(s)	298, 404, 719, 743, 818, 845, 917, 922
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	6 cut(s)	149, 295, 637, 674, 890, 954
Hpy166II	GTNNAC	2 cut(s)	103, 530
Hpy188I	TCNGA	4 cut(s)	69, 742, 787, 1003
Hpy188III	TCNNGA	7 cut(s)	194, 518, 648, 725, 842, 926, 1069
Hpy8I	GTNNAC	2 cut(s)	103, 530
HpyAV	CCTTC	3 cut(s)	461, 782, 820
HpyCH4III	ACNGT	5 cut(s)	116, 1007, 1032, 1062, 1172
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	6 cut(s)	83, 274, 548, 662, 911, 1115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	19
Kpn2I	TCCGGA	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	64, 511, 520, 562, 959
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	4 cut(s)	25, 286, 895, 1127
LweI	GCATC	3 cut(s)	92, 302, 433
MaeI	CTAG	1 cut(s)	1186
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	155, 283
MalI	GATC	5 cut(s)	66, 513, 522, 564, 961
MboI	GATC	5 cut(s)	64, 511, 520, 562, 959
MboII	GAAGA	6 cut(s)	182, 572, 599, 738, 926, 988
MfeI	CAATTG	1 cut(s)	851
MflI	RGATCY	2 cut(s)	64, 562
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	2 cut(s)	126, 150
MluCI	AATT	8 cut(s)	200, 458, 576, 594, 701, 832, 851, 1121
MluNI	TGGCCA	2 cut(s)	126, 150
MlyI	GAGTC	2 cut(s)	911, 931
Mox20I	TGGCCA	2 cut(s)	126, 150
Mph1103I	ATGCAT	1 cut(s)	664
MroI	TCCGGA	1 cut(s)	193
MscI	TGGCCA	2 cut(s)	126, 150
MseI	TTAA	1 cut(s)	812
MslI	CAYNNNNRTG	6 cut(s)	126, 150, 252, 310, 489, 543
Msp20I	TGGCCA	2 cut(s)	126, 150
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	851
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	5 cut(s)	64, 511, 520, 562, 959
NmuCI	GTSAC	2 cut(s)	155, 283
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	2 cut(s)	470, 548
PaeR7I	CTCGAG	1 cut(s)	919
PagI	TCATGA	3 cut(s)	724, 925, 1068
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	6 cut(s)	298, 404, 719, 743, 818, 845
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	40, 276, 910, 1117
PleI	GAGTC	2 cut(s)	911, 930
PpsI	GAGTC	2 cut(s)	911, 930
PshAI	GACNNNNGTC	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	585
PspEI	GGTNACC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	585
PspXI	VCTCGAGB	1 cut(s)	919
PstI	CTGCAG	2 cut(s)	913, 1117
PsuI	RGATCY	2 cut(s)	64, 562
RsaI	GTAC	3 cut(s)	375, 1043, 1169
RsaNI	GTAC	3 cut(s)	374, 1042, 1168
RseI	CAYNNNNRTG	6 cut(s)	126, 150, 252, 310, 489, 543
SaqAI	TTAA	1 cut(s)	812
SatI	GCNGC	4 cut(s)	39, 275, 909, 1116
Sau3AI	GATC	5 cut(s)	64, 511, 520, 562, 959
SchI	GAGTC	2 cut(s)	911, 931
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	9 cut(s)	22, 74, 173, 189, 279, 433, 632, 880, 955
SfaNI	GCATC	3 cut(s)	92, 302, 433
SfcI	CTRYAG	3 cut(s)	570, 909, 1113
Sfr274I	CTCGAG	1 cut(s)	919
SlaI	CTCGAG	1 cut(s)	919
SmiMI	CAYNNNNRTG	6 cut(s)	126, 150, 252, 310, 489, 543
SmlI	CTYRAG	1 cut(s)	919
SmoI	CTYRAG	1 cut(s)	919
Sse9I	AATT	8 cut(s)	200, 458, 576, 594, 701, 832, 851, 1121
SsiI	CCGC	2 cut(s)	206, 590
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	1 cut(s)	1186
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	3 cut(s)	151, 160, 390
TaaI	ACNGT	5 cut(s)	116, 1007, 1032, 1062, 1172
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	182, 920
TasI	AATT	8 cut(s)	200, 458, 576, 594, 701, 832, 851, 1121
TatI	WGTACW	1 cut(s)	1041
TfiI	GAWTC	6 cut(s)	298, 404, 719, 743, 818, 845
Tru1I	TTAA	1 cut(s)	812
Tru9I	TTAA	1 cut(s)	812
TscAI	CASTG	4 cut(s)	119, 757, 874, 1117
TseFI	GTSAC	2 cut(s)	155, 283
TseI	GCWGC	4 cut(s)	38, 274, 908, 1115
Tsp45I	GTSAC	2 cut(s)	155, 283
TspDTI	ATGAA	7 cut(s)	236, 290, 294, 443, 893, 1057, 1152
TspGWI	ACGGA	1 cut(s)	781
TspRI	CASTG	4 cut(s)	119, 757, 874, 1117
Van91I	CCANNNNNTGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	832
XceI	RCATGY	2 cut(s)	470, 548
XcmI	CCANNNNNNNNNTGG	4 cut(s)	119, 143, 149, 260
XhoI	CTCGAG	1 cut(s)	919
XspI	CTAG	1 cut(s)	1186
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.