Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0011055

Physical Location & Seq

Genomic Coordinates Forward (+)

54857389 .. 54861487

Gene Structure 4099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGAGTTGTGTAAGAGACGTATGTTGTCTGTTGTTGCTGCTTTGGTTCTTGGGCTGTGTTTGGATCTGAGCTTGGTTTGTGCATCTGGGGAGGATCATGTTCACACCCACCACTGTAATCATGGCCATGATGACCATGACCATCATGGTCATGGTCACCAAGGCCAGAGCTTGGTGGGGTCGAAGCTTCTTCCGGAGGAATTGGCGGAGGAGGAGGATATGAAGTTGTATGGATTTGGGTTTCAACATGACCATGAGCATTTTGGTGCTTTGCAGCTCTCGGTGACTGGTCTTTGGATTCATTCATTGGGATGCTCGTTTTTGGTCAGCATGGCTTCCCTCATTTGCCTGATTATCTTGCCAGTAATATTCGTACAGGGGAAACCATCCAAGGCAGTTGTTGATTCGTTGGCTTTATTTGGGGCTGGAGCTATGTTAGGGGATGCTTTCCTTCATCAATTACCACATGCTTTTGGTGGAGGGCACTCACATGACGACCATGTAGGCCATCATCACGATCATAGTGAACATGAGCATTCACATGCACATTCTTTGGAAGATCTTTCTGTAGGAATTGCTGTCCTGGCGGGAATTGTATTGTTTCTTTTGGTAGAAAAGATGGTGAGGTATGTTGAGGAACACTCTGGAGGAACTAATGCATTGGGTCATGGTCATCATCACCATCATCACAGCAAGAAATTGAAGGATGACAACAATTCTCATGATGACTTGACATCAGAATCTTCCACTGGAAAAGATGGACGGAAGCCAAATGTGTCATCTGAAGGAAAAGTGGAAAGTGAAGTTTTAAATGATTCTTTGAAGGAAAATTCTCATCATGATTCTCAATTGCGGAAGAGAAACACTGCCACAGGTGATAGAGATAATAAACAAGATGTTCATGCTGCAGAAGACTCGAGCCATGATACTAAATCGCTAGATGTAGAACCTACACGATCACCCAACAATCTTGTGTTTGGTTATCTCAATCTCTTCTCCGACGGTGTTCACAATTTCACAGATGGGATGGCTTTAGGAAGTGCTTTCCTGCTTCATGGTACTGTTGGTGGGTGGTCTAGAACTCTATTCTTGCTTGCGCATGAGATTCCTCAAGAGGTTGGTGATTTTGGTATTCTGGTGAGGTCTGGTTTCAGTGTATCTAAAGCTCTCTTTTTCAATTTCCTCTCAGCACTTGTGGCCCTCGTTGGAACTGCAATGGCTCTGCTTGTCGGACAAGATCCGGGACAGTCATCTTTGATGGAGGGTTTTACAGCTGGTGGGTTTATATACATTGCGGTTGCTGGAGTGCTTGCAGAAATGAATAACAATGGCAACTCATCATTGAAAAGCACAGCGATGCAATTAACTTCGTTGATACTCGGCATGTCAGTTGCTCTATGTATTTCACTTTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0012505 GO:0015075 GO:0015318 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0034220 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

472

Amino Acids

50.88

Weight (kDa)

5.81

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	97 - 468	2.6e-55	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68100 AT1G68100
fragaria_vesca	FvH4_4g26130 FvH4_4g26130
malus_domestica	MD13G1015600.v1.1 MD16G1013100.v1.1
prunus_persica	Prupe.1G338200_v2.0.a1
pyrus_communis	pycom13g01320 pycom16g01230
rosa_chinensis	RchiOBHm_Chr4g0433701
rosa_laevigata	RLG00000006737
rosa_multiflora	Rmu_sc0000312.1_g000025
rosa_roxburghii	Rroxscaffold_5G00375140
rosa_rugosa	Rorug04G0270900.1 Rorug04G0271000.1
rosa_samantha	Rh4AG325300 Rh4BG333100 Rh4CG348300 Rh4DG329700
rosa_wichuraiana	Rw4G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1098
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	4 cut(s)	206, 587, 853, 1295
AclWI	GGATC	3 cut(s)	72, 102, 1232
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	829
AcuI	CTGAAG	1 cut(s)	804
AfaI	GTAC	2 cut(s)	375, 1060
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	5 cut(s)	245, 703, 823, 1177, 1345
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	7 cut(s)	72, 171, 187, 277, 431, 1166, 1274
AluI	AGCT	7 cut(s)	72, 171, 187, 277, 431, 1166, 1274
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	3 cut(s)	72, 102, 1232
Ama87I	CYCGRG	1 cut(s)	916
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	4 cut(s)	124, 163, 505, 1197
ApeKI	GCWGC	3 cut(s)	38, 274, 905
ApoI	RAATTY	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	1099
AspS9I	GGNCC	1 cut(s)	1198
AsuC2I	CCSGG	1 cut(s)	1242
AsuHPI	GGTGA	8 cut(s)	149, 295, 634, 671, 887, 951, 1133, 1150
AvaI	CYCGRG	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	918
BbvI	GCAGC	3 cut(s)	25, 286, 892
BccI	CCATC	9 cut(s)	150, 394, 516, 613, 690, 752, 1016, 1021, 1252
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BciT130I	CCWGG	1 cut(s)	584
BcnI	CCSGG	1 cut(s)	1242
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	938, 1077
BfmI	CTRYAG	2 cut(s)	567, 906
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	3 cut(s)	39, 275, 906
BlsI	GCNGC	3 cut(s)	40, 276, 907
Bme1390I	CCNGG	2 cut(s)	584, 1242
BmeT110I	CYCGRG	1 cut(s)	916
BmgT120I	GGNCC	1 cut(s)	1198
BmrFI	CCNGG	2 cut(s)	584, 1242
BmsI	GCATC	4 cut(s)	92, 302, 433, 1347
BpiI	GAAGAC	1 cut(s)	918
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
BpmI	CTGGAG	3 cut(s)	447, 666, 1323
BpuEI	CTTGAG	1 cut(s)	1095
BpuMI	CCSGG	1 cut(s)	1242
BsaJI	CCNNGG	2 cut(s)	160, 390
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	3 cut(s)	292, 362, 754
Bse3DI	GCAATG	2 cut(s)	1221, 1290
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	160, 390
BseGI	GGATG	5 cut(s)	317, 386, 448, 712, 1032
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	2 cut(s)	1221, 1290
BseMII	CTCAG	2 cut(s)	59, 1200
BseNI	ACTGG	3 cut(s)	292, 362, 754
BseRI	GAGGAG	2 cut(s)	224, 227
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	3 cut(s)	25, 286, 892
BshFI	GGCC	4 cut(s)	126, 165, 507, 1199
BsiHKCI	CYCGRG	1 cut(s)	916
BsiSI	CCGG	2 cut(s)	194, 1241
BslFI	GGGAC	1 cut(s)	1257
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	10
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	1257
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	4 cut(s)	126, 165, 507, 1199
BsoBI	CYCGRG	1 cut(s)	916
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	6 cut(s)	64, 94, 517, 559, 956, 1237
BspACI	CCGC	4 cut(s)	206, 587, 853, 1295
BspANI	GGCC	4 cut(s)	126, 165, 507, 1199
BspCNI	CTCAG	2 cut(s)	60, 1199
BspEI	TCCGGA	1 cut(s)	193
BspHI	TCATGA	2 cut(s)	721, 838
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	3 cut(s)	72, 102, 1232
BsrDI	GCAATG	2 cut(s)	1221, 1290
BsrI	ACTGG	3 cut(s)	292, 362, 754
BssECI	CCNNGG	2 cut(s)	160, 390
BssMI	GATC	6 cut(s)	64, 94, 517, 559, 956, 1237
BssT1I	CCWWGG	2 cut(s)	160, 390
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	4 cut(s)	116, 1004, 1063, 1248
Bst6I	CTCTTC	2 cut(s)	851, 998
BstC8I	GCNNGC	2 cut(s)	1095, 1311
BstDEI	CTNAG	2 cut(s)	68, 1186
BstEII	GGTNACC	1 cut(s)	155
BstF5I	GGATG	5 cut(s)	317, 386, 448, 712, 1032
BstHHI	GCGC	1 cut(s)	1099
BstKTI	GATC	6 cut(s)	67, 97, 520, 562, 959, 1240
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	6 cut(s)	64, 94, 517, 559, 956, 1237
BstMWI	GCNNNNNNNGC	2 cut(s)	584, 1196
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	3 cut(s)	470, 545, 1387
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	582, 1240
BstSFI	CTRYAG	2 cut(s)	567, 906
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	3 cut(s)	25, 286, 892
BstV2I	GAAGAC	1 cut(s)	918
BstX2I	RGATCY	3 cut(s)	64, 559, 1237
BstYI	RGATCY	3 cut(s)	64, 559, 1237
BsuRI	GGCC	4 cut(s)	126, 165, 507, 1199
BtgZI	GCGATG	1 cut(s)	1370
BtsCI	GGATG	5 cut(s)	317, 386, 448, 712, 1032
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	4 cut(s)	112, 747, 864, 1159
Cac8I	GCNNGC	2 cut(s)	1095, 1311
CciI	TCATGA	2 cut(s)	721, 838
CfoI	GCGC	1 cut(s)	1099
Cfr13I	GGNCC	1 cut(s)	1198
Csp6I	GTAC	2 cut(s)	374, 1059
CviQI	GTAC	2 cut(s)	374, 1059
DdeI	CTNAG	2 cut(s)	68, 1186
DpnI	GATC	6 cut(s)	66, 96, 519, 561, 958, 1239
DpnII	GATC	6 cut(s)	64, 94, 517, 559, 956, 1237
DraI	TTTAAA	1 cut(s)	810
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	851, 998
EarI	CTCTTC	2 cut(s)	851, 998
EciI	GGCGGA	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	160, 390
Eco57I	CTGAAG	1 cut(s)	804
Eco88I	CYCGRG	1 cut(s)	916
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	2 cut(s)	160, 390
EcoT22I	ATGCAT	1 cut(s)	661
ErhI	CCWWGG	2 cut(s)	160, 390
Esp3I	CGTCTC	1 cut(s)	10
FaqI	GGGAC	1 cut(s)	1257
FauI	CCCGC	1 cut(s)	580
Fnu4HI	GCNGC	3 cut(s)	39, 275, 906
FokI	GGATG	5 cut(s)	324, 373, 455, 719, 1039
Fsp4HI	GCNGC	3 cut(s)	39, 275, 906
FspBI	CTAG	2 cut(s)	938, 1077
FspI	TGCGCA	1 cut(s)	1098
GlaI	GCGC	1 cut(s)	1098
GluI	GCNGC	3 cut(s)	39, 275, 906
GsuI	CTGGAG	3 cut(s)	447, 666, 1323
HaeIII	GGCC	4 cut(s)	126, 165, 507, 1199
HapII	CCGG	2 cut(s)	194, 1241
HhaI	GCGC	1 cut(s)	1099
Hin6I	GCGC	1 cut(s)	1097
HinP1I	GCGC	1 cut(s)	1097
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	7 cut(s)	298, 404, 740, 815, 842, 914, 1105
HpaII	CCGG	2 cut(s)	194, 1241
HphI	GGTGA	8 cut(s)	149, 295, 634, 671, 887, 951, 1133, 1150
Hpy166II	GTNNAC	3 cut(s)	103, 527, 1009
Hpy188I	TCNGA	5 cut(s)	69, 739, 784, 1000, 1232
Hpy188III	TCNNGA	7 cut(s)	194, 515, 645, 722, 839, 1077, 1112
Hpy8I	GTNNAC	3 cut(s)	103, 527, 1009
Hpy99I	CGWCG	1 cut(s)	1004
HpyAV	CCTTC	4 cut(s)	461, 697, 779, 817
HpyCH4III	ACNGT	4 cut(s)	116, 1004, 1063, 1248
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	8 cut(s)	83, 274, 545, 659, 908, 1214, 1313, 1360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	584, 1196
HpyF3I	CTNAG	2 cut(s)	68, 1186
HpySE526I	ACGT	1 cut(s)	19
HspAI	GCGC	1 cut(s)	1097
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	6 cut(s)	64, 94, 517, 559, 956, 1237
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	3 cut(s)	25, 286, 892
LweI	GCATC	4 cut(s)	92, 302, 433, 1347
MaeI	CTAG	2 cut(s)	938, 1077
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	155, 283
MalI	GATC	6 cut(s)	66, 96, 519, 561, 958, 1239
MboI	GATC	6 cut(s)	64, 94, 517, 559, 956, 1237
MboII	GAAGA	6 cut(s)	182, 569, 735, 868, 923, 985
MfeI	CAATTG	1 cut(s)	848
MflI	RGATCY	3 cut(s)	64, 559, 1237
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	126
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	908
MmeI	TCCRAC	3 cut(s)	1023, 1186, 1210
Mox20I	TGGCCA	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	661
MroI	TCCGGA	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	2 cut(s)	809, 1364
MslI	CAYNNNNRTG	8 cut(s)	126, 150, 252, 264, 310, 489, 540, 1355
Msp20I	TGGCCA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	1274
MspI	CCGG	2 cut(s)	194, 1241
MspR9I	CCNGG	2 cut(s)	584, 1242
MunI	CAATTG	1 cut(s)	848
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	584, 1196
NciI	CCSGG	1 cut(s)	1242
NdeII	GATC	6 cut(s)	64, 94, 517, 559, 956, 1237
NmeAIII	GCCGAG	1 cut(s)	1359
NmuCI	GTSAC	2 cut(s)	155, 283
NsbI	TGCGCA	1 cut(s)	1098
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	3 cut(s)	470, 545, 1387
PaeR7I	CTCGAG	1 cut(s)	916
PagI	TCATGA	2 cut(s)	721, 838
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	6 cut(s)	298, 404, 740, 815, 842, 1105
PflMI	CCANNNNNTGG	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	1240
PkrI	GCNGC	3 cut(s)	40, 276, 907
PleI	GAGTC	1 cut(s)	908
PpsI	GAGTC	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	582
PspEI	GGTNACC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	1198
PspXI	VCTCGAGB	1 cut(s)	916
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	3 cut(s)	64, 559, 1237
PvuII	CAGCTG	1 cut(s)	1274
RsaI	GTAC	2 cut(s)	375, 1060
RsaNI	GTAC	2 cut(s)	374, 1059
RseI	CAYNNNNRTG	8 cut(s)	126, 150, 252, 264, 310, 489, 540, 1355
SaqAI	TTAA	2 cut(s)	809, 1364
SatI	GCNGC	3 cut(s)	39, 275, 906
Sau3AI	GATC	6 cut(s)	64, 94, 517, 559, 956, 1237
Sau96I	GGNCC	1 cut(s)	1198
SchI	GAGTC	1 cut(s)	908
ScrFI	CCNGG	2 cut(s)	584, 1242
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	4 cut(s)	92, 302, 433, 1347
SfcI	CTRYAG	2 cut(s)	567, 906
Sfr274I	CTCGAG	1 cut(s)	916
SlaI	CTCGAG	1 cut(s)	916
SmiMI	CAYNNNNRTG	8 cut(s)	126, 150, 252, 264, 310, 489, 540, 1355
SmlI	CTYRAG	2 cut(s)	916, 1110
SmoI	CTYRAG	2 cut(s)	916, 1110
SsiI	CCGC	4 cut(s)	206, 587, 853, 1295
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	2 cut(s)	938, 1077
StyD4I	CCNGG	2 cut(s)	582, 1240
StyI	CCWWGG	2 cut(s)	160, 390
TaaI	ACNGT	4 cut(s)	116, 1004, 1063, 1248
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	182, 917
TfiI	GAWTC	6 cut(s)	298, 404, 740, 815, 842, 1105
Tru1I	TTAA	2 cut(s)	809, 1364
Tru9I	TTAA	2 cut(s)	809, 1364
TscAI	CASTG	4 cut(s)	119, 754, 871, 1159
TseFI	GTSAC	2 cut(s)	155, 283
TseI	GCWGC	3 cut(s)	38, 274, 905
Tsp45I	GTSAC	2 cut(s)	155, 283
TspDTI	ATGAA	7 cut(s)	236, 290, 294, 443, 890, 1043, 1334
TspGWI	ACGGA	1 cut(s)	778
TspRI	CASTG	4 cut(s)	119, 754, 871, 1159
Van91I	CCANNNNNTGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	829
XbaI	TCTAGA	1 cut(s)	1076
XceI	RCATGY	3 cut(s)	470, 545, 1387
XcmI	CCANNNNNNNNNTGG	4 cut(s)	119, 143, 149, 260
XhoI	CTCGAG	1 cut(s)	916
XspI	CTAG	2 cut(s)	938, 1077
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.