FvH4_4g26690

isoform X1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
27996781 .. 28001719
4939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26690.t1

Sequence Viewer

Length: 1575 bp
ATGTCTGGGCAAGGATATGAGACATGGGTTCTTGAAGTTCGTGGTGCAGGATTGAGTGTTCATGAATCAAATAAGAAAGAAATCCAGGAGTCTGCCCATGCAAAATCTGAACAAATGGAATCTGTGTCCAAGGGTGCAACCAATGCAGCTTTTTCTGCACAAAATCAGTCAAATAGCTTTTCTGACACCAATGCAAAATCCGAACCGAAGGAAGCTGTTTCACAGAGTGCATCTAATGGAGCTGTTTCTGCACAAAACCGGTCAAATAGCTTCTCTGATGCAGACGCAAAATCTGAACAGATGGAAGCTCTTTCGCAGAACACAACTGATGGAGCTTTTCCTACCGGAGAGCAGTTGGGTAGTTTTCCTGGTGCGTCAGCATTTGAAAGACCTGTTCACAAAATAAATGATGAGATTTCAGCTGCCAAAGGAGACCTTACAAGTATACCAAGTGTAGGGGGCGAATCAAAAACCGTGACAAGGGTGACTGAAACTTTTACGGAGAAGTCAGAACAATTGTCTGGCTTTCTCGGTGAAGGTCAATCCAGTATCATGTCAAATAATTTACTCGATCAAATTTCAAAACTTTTTGCTGATTCTACCTTATCTGAGCGGTTCAATGATATAAGCAATAAGCTGTCAAGCCTCTTAGAGACAAGACAAAACTCTGCTATTGCTAGCCAAATCAGAGACCTCAGTCAAAGGCTTGTGAATATAATTGAAGAAGGCCAGCGGTCTGTTTCACCATCACTGTTTAACTTGCAAGAGCGTCTTTCTTCCACACTAGAAGATTTCCAAAAGCAACTGGACTTGATAGTGAAGTATGACTGGGACTTTGATCACTACCTTGAAGAGGATATACCTGCTGTGATGGATTATATAATGGCGGAAAGTAAGCCGAAGGATGGGAAGTTGTTAGCAATTGGGCACTCAATGGGTGGAATCTTGCTTTATGCAATGCTTTCACGATGTGGTTCTGAAGGAAGAATGTGCAACCTAGCAGCTGTTGTAACACTGGCCTCATCACTTGATTACACATCTTCAAAATCAACTCTCAAATTGCTTATACCACTTGCAGACCCCGCGCAGGCTCTCAATGTTCCTGTTGTTCCTTTGGGGACATTATTGGCAGCAGCTTATCCTCTCTCATCTCGCCCTCCTTATGTCTTCTCTTGGCTTAATGATCTGATTTCAGCACAGGGCATGATGCATCCAGAATTATTGGAAAAGCTTGTTTTGAATAACTTCTGTACAATACCCGCAAAACTTCTATTGCAGCTAACAACAGCTTTTAAGGAGGGGGGACTACGTGACAGGAGTGGCACCTACTTGTATAAGGATCATATACATAAAAGCAATGTCCCTATTCTGGCACTTGCTGGAGATAAGGATTCAATATGCCCTCCAGAAGCTGTAGAAGAAACTGTTAAGGTAATACCGAAGCACCTGGTTACATATAAAGTTTTTGGAGAATCTGGAGGTGCACACTATGCTCATTATGATTTAGTAGGAGGCCGAATGGCAGCAGCGCAAGTCTATCCATGTATAATTGAATTTCTTAATAAACATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

525

Amino Acids

56.87

Weight (kDa)

5.19

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 871
AccB1I GGYRCC 1 cut(s) 1322
AccBSI CCGCTC 1 cut(s) 613
AccI GTMKAC 1 cut(s) 445
AccII CGCG 1 cut(s) 1085
AciI CCGC 5 cut(s) 613, 733, 887, 1083, 1260
AclWI GGATC 1 cut(s) 1347
AcsI RAATTY 2 cut(s) 576, 1553
AcuI CTGAAG 1 cut(s) 999
AdeI CACNNNGTG 2 cut(s) 227, 971
AfaI GTAC 1 cut(s) 1252
AfiI CCNNNNNNNGG 6 cut(s) 455, 480, 853, 905, 1087, 1369
AgeI ACCGGT 1 cut(s) 258
AjnI CCWGG 3 cut(s) 84, 367, 1446
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
Alw21I GWGCWC 1 cut(s) 1486
Alw26I GTCTC 4 cut(s) 14, 426, 647, 684
Alw44I GTGCAC 1 cut(s) 1482
AlwI GGATC 1 cut(s) 1347
AlwNI CAGNNNCTG 1 cut(s) 1412
AoxI GGCC 3 cut(s) 727, 1017, 1513
ApaLI GTGCAC 1 cut(s) 1482
ApeKI GCWGC 8 cut(s) 146, 422, 1001, 1130, 1133, 1276, 1523, 1526
ApoI RAATTY 2 cut(s) 576, 1553
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
AsiGI ACCGGT 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 1244
AspLEI GCGC 2 cut(s) 1087, 1531
AsuHPI GGTGA 3 cut(s) 496, 545, 735
AsuNHI GCTAGC 1 cut(s) 677
BaeGI GKGCMC 2 cut(s) 930, 1486
BanI GGYRCC 1 cut(s) 1322
BarI GAAGNNNNNNTAC 2 cut(s) 843, 875
BbsI GAAGAC 1 cut(s) 1159
Bbv12I GWGCWC 1 cut(s) 1486
BbvI GCAGC 8 cut(s) 158, 409, 1013, 1142, 1145, 1288, 1535, 1538
BccI CCATC 5 cut(s) 295, 323, 754, 865, 899
BciT130I CCWGG 3 cut(s) 86, 369, 1448
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 4 cut(s) 14, 426, 647, 684
BfaI CTAG 3 cut(s) 678, 785, 998
BfmI CTRYAG 1 cut(s) 1413
BfuAI ACCTGC 1 cut(s) 871
BisI GCNGC 8 cut(s) 147, 423, 1002, 1131, 1134, 1277, 1524, 1527
BlsI GCNGC 8 cut(s) 148, 424, 1003, 1132, 1135, 1278, 1525, 1528
Bme1390I CCNGG 3 cut(s) 86, 369, 1448
BmiI GGNNCC 1 cut(s) 1324
BmrFI CCNGG 3 cut(s) 86, 369, 1448
BmrI ACTGGG 1 cut(s) 838
BmsI GCATC 4 cut(s) 239, 268, 1197, 1219
BmtI GCTAGC 1 cut(s) 681
BmuI ACTGGG 1 cut(s) 838
BoxI GACNNNNGTC 1 cut(s) 696
BpiI GAAGAC 1 cut(s) 1159
BpmI CTGGAG 3 cut(s) 1389, 1401, 1497
BsaAI YACGTR 1 cut(s) 1310
BsaI GGTCTC 2 cut(s) 426, 684
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 2 cut(s) 258, 344
Bsc4I CCNNNNNNNGG 6 cut(s) 455, 480, 853, 905, 1087, 1369
Bse118I RCCGGY 1 cut(s) 258
Bse1I ACTGG 4 cut(s) 546, 810, 833, 1020
Bse3DI GCAATG 2 cut(s) 963, 1363
BseBI CCWGG 3 cut(s) 86, 369, 1448
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 910, 1210
BseLI CCNNNNNNNGG 6 cut(s) 455, 480, 853, 905, 1087, 1369
BseMI GCAATG 2 cut(s) 963, 1363
BseMII CTCAG 2 cut(s) 600, 709
BseNI ACTGG 4 cut(s) 546, 810, 833, 1020
BseSI GKGCMC 2 cut(s) 930, 1486
BseXI GCAGC 8 cut(s) 158, 409, 1013, 1142, 1145, 1288, 1535, 1538
BsgI GTGCAG 3 cut(s) 66, 141, 234
Bsh1236I CGCG 1 cut(s) 1085
BshFI GGCC 3 cut(s) 729, 1019, 1515
BshNI GGYRCC 1 cut(s) 1322
BshTI ACCGGT 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 1486
BsiSI CCGG 2 cut(s) 259, 345
BslFI GGGAC 4 cut(s) 845, 1132, 1317, 1346
BslI CCNNNNNNNGG 6 cut(s) 455, 480, 853, 905, 1087, 1369
BsmAI GTCTC 4 cut(s) 14, 426, 647, 684
BsmFI GGGAC 4 cut(s) 845, 1132, 1317, 1346
BsnI GGCC 3 cut(s) 729, 1019, 1515
Bso31I GGTCTC 2 cut(s) 426, 684
Bsp1286I GDGCHC 2 cut(s) 930, 1486
Bsp1407I TGTACA 1 cut(s) 1250
Bsp143I GATC 4 cut(s) 571, 838, 1183, 1339
BspACI CCGC 5 cut(s) 613, 733, 887, 1083, 1260
BspANI GGCC 3 cut(s) 729, 1019, 1515
BspCNI CTCAG 2 cut(s) 601, 708
BspFNI CGCG 1 cut(s) 1085
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 1324
BspMI ACCTGC 1 cut(s) 871
BspOI GCTAGC 1 cut(s) 681
BspPI GGATC 1 cut(s) 1347
BspT107I GGYRCC 1 cut(s) 1322
BspTNI GGTCTC 2 cut(s) 426, 684
BsrBI CCGCTC 1 cut(s) 613
BsrDI GCAATG 2 cut(s) 963, 1363
BsrFI RCCGGY 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 1250
BsrI ACTGG 4 cut(s) 546, 810, 833, 1020
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 4 cut(s) 571, 838, 1183, 1339
BssNAI GTATAC 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 129
Bst1107I GTATAC 1 cut(s) 446
Bst2UI CCWGG 3 cut(s) 86, 369, 1448
Bst4CI ACNGT 3 cut(s) 475, 753, 1426
Bst6I CTCTTC 1 cut(s) 846
BstAPI GCANNNNNTGC 2 cut(s) 143, 1490
BstAUI TGTACA 1 cut(s) 1250
BstBAI YACGTR 1 cut(s) 1310
BstC8I GCNNGC 3 cut(s) 679, 731, 1089
BstDEI CTNAG 3 cut(s) 609, 649, 695
BstENI CCTNNNNNAGG 1 cut(s) 851
BstF5I GGATG 2 cut(s) 910, 1210
BstFNI CGCG 1 cut(s) 1085
BstHHI GCGC 2 cut(s) 1087, 1531
BstKTI GATC 4 cut(s) 574, 841, 1186, 1342
BstMAI GTCTC 4 cut(s) 14, 426, 647, 684
BstMBI GATC 4 cut(s) 571, 838, 1183, 1339
BstMWI GCNNNNNNNGC 5 cut(s) 143, 155, 248, 1082, 1490
BstNI CCWGG 3 cut(s) 86, 369, 1448
BstPAI GACNNNNGTC 1 cut(s) 696
BstSCI CCNGG 3 cut(s) 84, 367, 1446
BstSFI CTRYAG 1 cut(s) 1413
BstSLI GKGCMC 2 cut(s) 930, 1486
BstUI CGCG 1 cut(s) 1085
BstV1I GCAGC 8 cut(s) 158, 409, 1013, 1142, 1145, 1288, 1535, 1538
BstV2I GAAGAC 1 cut(s) 1159
BstZ17I GTATAC 1 cut(s) 446
BsuRI GGCC 3 cut(s) 729, 1019, 1515
BtsCI GGATG 2 cut(s) 910, 1210
BtsIMutI CAGTG 2 cut(s) 749, 1013
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 3 cut(s) 679, 731, 1089
CaiI CAGNNNCTG 1 cut(s) 1412
CciI TCATGA 1 cut(s) 61
CfoI GCGC 2 cut(s) 1087, 1531
Cfr10I RCCGGY 1 cut(s) 258
CseI GACGC 3 cut(s) 293, 363, 758
CsiI ACCWGGT 1 cut(s) 1446
Csp6I GTAC 1 cut(s) 1251
CspAI ACCGGT 1 cut(s) 258
CviAII CATG 7 cut(s) 24, 62, 98, 553, 1204, 1542, 1568
CviQI GTAC 1 cut(s) 1251
DdeI CTNAG 3 cut(s) 609, 649, 695
DpnI GATC 4 cut(s) 573, 840, 1185, 1341
DpnII GATC 4 cut(s) 571, 838, 1183, 1339
DraIII CACNNNGTG 2 cut(s) 227, 971
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
EciI GGCGGA 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 129
Eco31I GGTCTC 2 cut(s) 426, 684
Eco57I CTGAAG 1 cut(s) 999
EcoNI CCTNNNNNAGG 1 cut(s) 851
EcoRII CCWGG 3 cut(s) 84, 367, 1446
EcoT14I CCWWGG 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 1212
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 7 cut(s) 27, 65, 101, 556, 1207, 1545, 1571
FalI AAGNNNNNCTT 4 cut(s) 420, 452, 756, 788
FaqI GGGAC 4 cut(s) 845, 1132, 1317, 1346
FatI CATG 7 cut(s) 23, 61, 97, 552, 1203, 1541, 1567
FauI CCCGC 2 cut(s) 1090, 1267
FbaI TGATCA 1 cut(s) 838
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 8 cut(s) 147, 423, 1002, 1131, 1134, 1277, 1524, 1527
FokI GGATG 2 cut(s) 917, 1197
Fsp4HI GCNGC 8 cut(s) 147, 423, 1002, 1131, 1134, 1277, 1524, 1527
FspBI CTAG 3 cut(s) 678, 785, 998
GlaI GCGC 2 cut(s) 1086, 1530
GluI GCNGC 8 cut(s) 147, 423, 1002, 1131, 1134, 1277, 1524, 1527
GsuI CTGGAG 3 cut(s) 1389, 1401, 1497
HaeIII GGCC 3 cut(s) 729, 1019, 1515
HapII CCGG 2 cut(s) 259, 345
HgaI GACGC 3 cut(s) 293, 363, 758
HhaI GCGC 2 cut(s) 1087, 1531
Hin1II CATG 7 cut(s) 27, 65, 101, 556, 1207, 1545, 1571
Hin6I GCGC 2 cut(s) 1085, 1529
HinP1I GCGC 2 cut(s) 1085, 1529
HindIII AAGCTT 1 cut(s) 1229
HinfI GANTC 8 cut(s) 65, 89, 119, 464, 596, 942, 1391, 1472
HpaII CCGG 2 cut(s) 259, 345
HphI GGTGA 3 cut(s) 496, 545, 735
Hpy166II GTNNAC 3 cut(s) 397, 446, 1484
Hpy188III TCNNGA 6 cut(s) 32, 62, 966, 1214, 1406, 1476
Hpy8I GTNNAC 3 cut(s) 397, 446, 1484
HpyAV CCTTC 5 cut(s) 202, 530, 719, 895, 974
HpyCH4III ACNGT 3 cut(s) 475, 753, 1426
HpyCH4IV ACGT 1 cut(s) 1309
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 155, 248, 1082, 1490
HpyF3I CTNAG 3 cut(s) 609, 649, 695
HpySE526I ACGT 1 cut(s) 1309
Hsp92II CATG 7 cut(s) 27, 65, 101, 556, 1207, 1545, 1571
HspAI GCGC 2 cut(s) 1085, 1529
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 4 cut(s) 571, 838, 1183, 1339
LmnI GCTCC 2 cut(s) 239, 332
Lsp1109I GCAGC 8 cut(s) 158, 409, 1013, 1142, 1145, 1288, 1535, 1538
LweI GCATC 4 cut(s) 239, 268, 1197, 1219
MabI ACCWGGT 1 cut(s) 1446
MaeI CTAG 3 cut(s) 678, 785, 998
MaeII ACGT 1 cut(s) 1309
MaeIII GTNAC 5 cut(s) 475, 484, 1009, 1310, 1450
MalI GATC 4 cut(s) 573, 840, 1185, 1341
MbiI CCGCTC 1 cut(s) 613
MboI GATC 4 cut(s) 571, 838, 1183, 1339
MboII GAAGA 8 cut(s) 734, 768, 800, 863, 996, 1032, 1159, 1430
MfeI CAATTG 2 cut(s) 515, 921
MhlI GDGCHC 2 cut(s) 930, 1486
MluCI AATT 9 cut(s) 515, 562, 576, 717, 921, 1058, 1217, 1548, 1553
MlyI GAGTC 1 cut(s) 98
Mph1103I ATGCAT 1 cut(s) 1212
MroXI GAANNNNTTC 1 cut(s) 1244
MseI TTAA 5 cut(s) 756, 1179, 1293, 1428, 1560
MspA1I CMGCKG 3 cut(s) 422, 733, 1004
MspI CCGG 2 cut(s) 259, 345
MspR9I CCNGG 3 cut(s) 86, 369, 1448
MunI CAATTG 2 cut(s) 515, 921
MvaI CCWGG 3 cut(s) 86, 369, 1448
MvnI CGCG 1 cut(s) 1085
MwoI GCNNNNNNNGC 5 cut(s) 143, 155, 248, 1082, 1490
NdeII GATC 4 cut(s) 571, 838, 1183, 1339
NheI GCTAGC 1 cut(s) 677
NlaIII CATG 7 cut(s) 27, 65, 101, 556, 1207, 1545, 1571
NlaIV GGNNCC 1 cut(s) 1324
NmuCI GTSAC 3 cut(s) 475, 484, 1310
NsiI ATGCAT 1 cut(s) 1212
PagI TCATGA 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 1244
PfeI GAWTC 7 cut(s) 65, 119, 464, 596, 942, 1391, 1472
PfoI TCCNGGA 1 cut(s) 84
PinAI ACCGGT 1 cut(s) 258
PkrI GCNGC 8 cut(s) 148, 424, 1003, 1132, 1135, 1278, 1525, 1528
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 1310
PshAI GACNNNNGTC 1 cut(s) 696
Psp6I CCWGG 3 cut(s) 84, 367, 1446
PspGI CCWGG 3 cut(s) 84, 367, 1446
PspN4I GGNNCC 1 cut(s) 1324
PstNI CAGNNNCTG 1 cut(s) 1412
PvuII CAGCTG 2 cut(s) 422, 1004
RsaI GTAC 1 cut(s) 1252
RsaNI GTAC 1 cut(s) 1251
SaqAI TTAA 5 cut(s) 756, 1179, 1293, 1428, 1560
SatI GCNGC 8 cut(s) 147, 423, 1002, 1131, 1134, 1277, 1524, 1527
Sau3AI GATC 4 cut(s) 571, 838, 1183, 1339
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 86, 369, 1448
SduI GDGCHC 2 cut(s) 930, 1486
SexAI ACCWGGT 1 cut(s) 1446
SfaNI GCATC 4 cut(s) 239, 268, 1197, 1219
SfcI CTRYAG 1 cut(s) 1413
Sse9I AATT 9 cut(s) 515, 562, 576, 717, 921, 1058, 1217, 1548, 1553
SsiI CCGC 5 cut(s) 613, 733, 887, 1083, 1260
SspMI CTAG 3 cut(s) 678, 785, 998
StyD4I CCNGG 3 cut(s) 84, 367, 1446
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 3 cut(s) 475, 753, 1426
TaiI ACGT 1 cut(s) 1312
TaqI TCGA 1 cut(s) 570
TasI AATT 9 cut(s) 515, 562, 576, 717, 921, 1058, 1217, 1548, 1553
TatI WGTACW 1 cut(s) 1250
TfiI GAWTC 7 cut(s) 65, 119, 464, 596, 942, 1391, 1472
Tru1I TTAA 5 cut(s) 756, 1179, 1293, 1428, 1560
Tru9I TTAA 5 cut(s) 756, 1179, 1293, 1428, 1560
TscAI CASTG 2 cut(s) 756, 1020
TseFI GTSAC 3 cut(s) 475, 484, 1310
TseI GCWGC 8 cut(s) 146, 422, 1001, 1130, 1133, 1276, 1523, 1526
Tsp45I GTSAC 3 cut(s) 475, 484, 1310
TspDTI ATGAA 2 cut(s) 50, 78
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 2 cut(s) 756, 1020
VneI GTGCAC 1 cut(s) 1482
XagI CCTNNNNNAGG 1 cut(s) 851
XapI RAATTY 2 cut(s) 576, 1553
XmiI GTMKAC 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 1244
XspI CTAG 3 cut(s) 678, 785, 998
Zsp2I ATGCAT 1 cut(s) 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.