Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395383.1

Orthogroup ID

OG0004568

Physical Location & Seq

Genomic Coordinates Reverse (-)

134 .. 958

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395383.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgaatgtggcatacttgcagtcgtcatttgcacgttacatgtctgggcaaggatttgagacatgggttctcgaagtccgtggtgctggattgagtgtccatgaagcaaataggaaacaaatccaggagtctgcccatgcaaaatctgaacaaatggaatctgtgtctaagggtgcaacaaatggggctttttctgcagaaaaacagtcaaatagcttctctggtgcctgtgcaaaatctgaaccgatggaagctgtttcccagagtgcatctgatggagctatttctacagaaaagcagtcaaatagttttcctggtgcctcagcatttgaaactcctgttcacaaaataaatgatcagatttcagctgccaaaggagaccttacaagtataccaactgtagggggcgaatcaaaatccttgacaagtttgacggaaacttttacgcagatgtcagaacgattgtctggctttcttggtgaaggtcaatccagtatcatctctgctaatttacttgatcaaatttcaaaactttttgctgattctaccttatctgagcgtttcaatgatataagcaataagctttcaagcctcttagagacaagacaaaactctgcttttgctagccaaatcagagacctcagtcaaaggcttgtgaatataattgaagaaggtcagcggtctgtttctccatcactgtttgacttgcaagagcgtctttcttccacactagaagattttcagaagcaacttgacttgatagtgaagtatgactgggactttgatcactaccttgaagaggatatacctgctgtggtgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4

Protein Analysis

274

Amino Acids

29.93

Weight (kDa)

4.8

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15060 AT1G15060 AT1G15060
fragaria_vesca	FvH4_4g26690 FvH4_4g26690 FvH4_4g26690 FvH4_4g26690
malus_domestica	MD13G1035100.v1.1 MD16G1037000.v1.1
prunus_persica	Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1
pyrus_communis	pycom13g03070 pycom16g03190 pycom16g03200
rosa_chinensis	RchiOBHm_Chr4g0434381
rosa_laevigata	RLG00000006676
rosa_multiflora	Rmu_co8395383.1_g000001 Rmu_co8521181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375740
rosa_samantha	Rh4AG331600 Rh4AG331700 Rh4DG334600 Rh4DG334700
rosa_wichuraiana	Rw4G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	817
AccB1I	GGYRCC	2 cut(s)	224, 317
AccI	GTMKAC	1 cut(s)	391
AciI	CCGC	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	522
AfiI	CCNNNNNNNGG	2 cut(s)	401, 799
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	6 cut(s)	332, 528, 565, 588, 668, 797
AjnI	CCWGG	2 cut(s)	123, 313
AluBI	AGCT	5 cut(s)	216, 254, 281, 368, 583
AluI	AGCT	5 cut(s)	216, 254, 281, 368, 583
Alw26I	GTCTC	4 cut(s)	53, 372, 593, 630
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	522
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
Asp700I	GAANNNNTTC	1 cut(s)	738
AsuHPI	GGTGA	1 cut(s)	491
AsuNHI	GCTAGC	1 cut(s)	623
BanI	GGYRCC	2 cut(s)	224, 317
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbvCI	CCTCAGC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	3 cut(s)	241, 269, 700
BciT130I	CCWGG	2 cut(s)	125, 315
BclI	TGATCA	3 cut(s)	355, 517, 784
BcoDI	GTCTC	4 cut(s)	53, 372, 593, 630
BfaI	CTAG	2 cut(s)	624, 731
BfmI	CTRYAG	3 cut(s)	195, 288, 399
BfuAI	ACCTGC	1 cut(s)	817
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	2 cut(s)	125, 315
BmiI	GGNNCC	2 cut(s)	226, 319
BmrFI	CCNGG	2 cut(s)	125, 315
BmrI	ACTGGG	1 cut(s)	784
BmsI	GCATC	1 cut(s)	278
BmtI	GCTAGC	1 cut(s)	627
BmuI	ACTGGG	1 cut(s)	784
BoxI	GACNNNNGTC	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	322
BsaI	GGTCTC	2 cut(s)	372, 630
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 799
Bse1I	ACTGG	2 cut(s)	492, 779
BseBI	CCWGG	2 cut(s)	125, 315
BseDI	CCNNGG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	401, 799
BseMII	CTCAG	3 cut(s)	336, 546, 655
BseNI	ACTGG	2 cut(s)	492, 779
BseXI	GCAGC	1 cut(s)	355
BshNI	GGYRCC	2 cut(s)	224, 317
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	2 cut(s)	401, 799
BsmAI	GTCTC	4 cut(s)	53, 372, 593, 630
BsmFI	GGGAC	1 cut(s)	791
Bso31I	GGTCTC	2 cut(s)	372, 630
Bsp143I	GATC	3 cut(s)	355, 517, 784
BspACI	CCGC	1 cut(s)	679
BspCNI	CTCAG	3 cut(s)	335, 547, 654
BspLI	GGNNCC	2 cut(s)	226, 319
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	817
BspOI	GCTAGC	1 cut(s)	627
BspT107I	GGYRCC	2 cut(s)	224, 317
BspTNI	GGTCTC	2 cut(s)	372, 630
BsrI	ACTGG	2 cut(s)	492, 779
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	355, 517, 784
BssNAI	GTATAC	1 cut(s)	392
Bst1107I	GTATAC	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	125, 315
Bst4CI	ACNGT	3 cut(s)	207, 400, 699
Bst6I	CTCTTC	1 cut(s)	792
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	5 cut(s)	168, 322, 555, 595, 641
BstDSI	CCRYGG	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstKTI	GATC	3 cut(s)	358, 520, 787
BstMAI	GTCTC	4 cut(s)	53, 372, 593, 630
BstMBI	GATC	3 cut(s)	355, 517, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	2 cut(s)	125, 315
BstNSI	RCATGY	1 cut(s)	43
BstPAI	GACNNNNGTC	1 cut(s)	642
BstSCI	CCNGG	2 cut(s)	123, 313
BstSFI	CTRYAG	3 cut(s)	195, 288, 399
BstV1I	GCAGC	1 cut(s)	355
BstZ17I	GTATAC	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	695
BveI	ACCTGC	1 cut(s)	817
Cac8I	GCNNGC	1 cut(s)	625
CseI	GACGC	1 cut(s)	704
CviAII	CATG	4 cut(s)	40, 63, 101, 137
DdeI	CTNAG	5 cut(s)	168, 322, 555, 595, 641
DpnI	GATC	3 cut(s)	357, 519, 786
DpnII	GATC	3 cut(s)	355, 517, 784
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Eco31I	GGTCTC	2 cut(s)	372, 630
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoRII	CCWGG	2 cut(s)	123, 313
FaeI	CATG	4 cut(s)	43, 66, 104, 140
FalI	AAGNNNNNCTT	4 cut(s)	366, 398, 702, 734
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	4 cut(s)	39, 62, 100, 136
FbaI	TGATCA	3 cut(s)	355, 517, 784
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	624, 731
GluI	GCNGC	1 cut(s)	369
HgaI	GACGC	1 cut(s)	704
Hin1II	CATG	4 cut(s)	43, 66, 104, 140
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	4 cut(s)	128, 158, 410, 542
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	343, 392
Hpy188I	TCNGA	8 cut(s)	148, 241, 274, 360, 457, 556, 635, 744
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	2 cut(s)	343, 392
HpyAV	CCTTC	2 cut(s)	476, 665
HpyCH4III	ACNGT	3 cut(s)	207, 400, 699
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	8 cut(s)	19, 32, 140, 176, 197, 233, 269, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	5 cut(s)	168, 322, 555, 595, 641
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	4 cut(s)	43, 66, 104, 140
Ksp22I	TGATCA	3 cut(s)	355, 517, 784
Kzo9I	GATC	3 cut(s)	355, 517, 784
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	2 cut(s)	624, 731
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	3 cut(s)	357, 519, 786
MboI	GATC	3 cut(s)	355, 517, 784
MboII	GAAGA	4 cut(s)	680, 714, 746, 809
MluCI	AATT	3 cut(s)	508, 522, 663
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	331, 602, 650, 793, 813
MroXI	GAANNNNTTC	1 cut(s)	738
MspA1I	CMGCKG	2 cut(s)	368, 679
MspR9I	CCNGG	2 cut(s)	125, 315
MvaI	CCWGG	2 cut(s)	125, 315
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	3 cut(s)	355, 517, 784
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	4 cut(s)	43, 66, 104, 140
NlaIV	GGNNCC	2 cut(s)	226, 319
NspI	RCATGY	1 cut(s)	43
PciI	ACATGT	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	3 cut(s)	158, 410, 542
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	39
PshAI	GACNNNNGTC	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	123, 313
PspGI	CCWGG	2 cut(s)	123, 313
PspN4I	GGNNCC	2 cut(s)	226, 319
PstI	CTGCAG	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	368
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	355, 517, 784
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	125, 315
SfaNI	GCATC	1 cut(s)	278
SfcI	CTRYAG	3 cut(s)	195, 288, 399
Sse9I	AATT	3 cut(s)	508, 522, 663
SsiI	CCGC	1 cut(s)	679
SspMI	CTAG	2 cut(s)	624, 731
StyD4I	CCNGG	2 cut(s)	123, 313
TaaI	ACNGT	3 cut(s)	207, 400, 699
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	508, 522, 663
TfiI	GAWTC	3 cut(s)	158, 410, 542
TscAI	CASTG	1 cut(s)	702
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	17, 117
TspGWI	ACGGA	2 cut(s)	68, 449
TspRI	CASTG	1 cut(s)	702
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	2 cut(s)	624, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.