Rh4AG331600

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
64178496 .. 64180345
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG331600.1

Sequence Viewer

Length: 1323 bp
ATGGCTTCTTCTTCAATTCACTGCGATATTCGCTGCGCCCTTCTTCTTCACTTGGCCACGTCATCGTCACCATCATCGCCGTCGTCGTCGTCGCTATCCACGATTAGGACTCTCGGTCCCCACCGCATAACCTCGCGCGCCTCCGCGGCGCGTCGGGTGCTGTCGTCGTTCTCCTCATCGCCGCGGACGGCGTCGTTCCGCGTCAGAGCTTTCTCCAATGACGAGTCGAAAGAGGCCGTGAAGCTTCCGGAGAAGCCGTCGATATGCACCGCCGACGAGCTCCACTACGTCTCCGTGCCCGACTCCGATTGGAGGCTCGCCCTCTGGCGCTACCGCCCTTGCCCCAAGGCCCCTCAGAGGAATCACCCATTGCTGCTATTGTCTGGGGTGGGGACCAATGCAATTGGATACGATCTCTCTCCTGAGTCGTCATTTGCACGTTACATGTCTGGGCAAGGATTTGAGACATGGGTTCTCGAAGTTCGTGGTGCTGGATTGAGTCTCCATGAAGCAAATAGGAAACAAATCCAGGAGTCTGCCCATGCAAAATCTGAACAAATGGAATCTGTGTCTAAGGGTGCAACAAATGGAGCTTTTTCTGCAGAAAAACAATCAAATAGCTTCTCTGGTGCCCGTGCAAAATCTGAACAGATGGAAGCTGTTTCTCAGAGTGCAACTGATGGAGCTATTTCTACCGAAAAGCAGTCAAATAGTTTTTCTGGTGCTCGTGCAAAATCTGAACAGATGGAAGCTGTTTCTCAGAGTGCAACTGATGGAGCTATTTCTACAGAAAAGCAGTCAAATAGTTTTCCTGGTGCCTCAGCATTTGAAACTCCTGTTCACAAAATAAATGATCAGATTTCAGCTGCCAAAGGAGACCTTACAAGTATACCAACTGTAGGGGGCGAATCAAAATCCGTGACAAGTTTGACTGAAACTTTTACGCAGATGTCAGAACGATTGTCTGGCTTTCTTGGTGAAGGTCAATCCAGTATCATCTCTGCTAATTTACTTGATCAAATTTCAAAACTTTTTGCTGATTCTACCTTATCTGAGCGTTTCAATGATATAAGCAATAAGCTTTCAAGCCTCTTAGAGACAAGACAAAACTCTGCTTTTGCTAGCCAAATCAGAGACCTCAGCCAAAGGCTTGTGAATATAATTGAAGAAGGTCAGCGGTCTGTTTCTCCATCACTGTTTGACTTGCAAGAGCGTCTTTCTTCCACACTAGAAGATTTTCAGAAGCAACTTGACTTGATAGTGAAGTATGACTGGGACTTTGATCACTACCTTGAAGAGGATATACCTGCTGTGGTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

440

Amino Acids

47.82

Weight (kDa)

5.81

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1315
AccB1I GGYRCC 2 cut(s) 629, 815
AccI GTMKAC 1 cut(s) 889
AccII CGCG 6 cut(s) 136, 138, 146, 151, 184, 201
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 9 cut(s) 124, 144, 146, 182, 184, 199, 270, 334, 1177
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 1020
AcyI GRCGYC 1 cut(s) 191
AfiI CCNNNNNNNGG 5 cut(s) 105, 312, 357, 899, 1297
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 7 cut(s) 15, 830, 1026, 1063, 1086, 1166, 1295
AhdI GACNNNNNGTC 1 cut(s) 114
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 2 cut(s) 528, 811
Alw21I GWGCWC 2 cut(s) 282, 727
Alw26I GTCTC 6 cut(s) 295, 458, 506, 870, 1091, 1128
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 3 cut(s) 54, 234, 348
ApeKI GCWGC 3 cut(s) 33, 373, 866
ApoI RAATTY 1 cut(s) 1020
ArsI GACNNNNNNTTYG 2 cut(s) 1262, 1294
Asp700I GAANNNNTTC 1 cut(s) 1236
AspLEI GCGC 5 cut(s) 38, 138, 140, 151, 330
AspS9I GGNCC 3 cut(s) 116, 349, 393
AsuHPI GGTGA 3 cut(s) 60, 356, 989
AsuNHI GCTAGC 1 cut(s) 1121
AvaII GGWCC 2 cut(s) 116, 393
BaeGI GKGCMC 2 cut(s) 300, 634
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 2 cut(s) 629, 815
BanII GRGCYC 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 1287, 1319
BauI CACGAG 1 cut(s) 726
Bbv12I GWGCWC 2 cut(s) 282, 727
BbvCI CCTCAGC 2 cut(s) 820, 1139
BbvI GCAGC 3 cut(s) 20, 360, 853
BccI CCATC 6 cut(s) 79, 646, 674, 739, 767, 1198
BceAI ACGGC 4 cut(s) 64, 204, 221, 241
BciT130I CCWGG 2 cut(s) 530, 813
BciVI GTATCC 1 cut(s) 401
BclI TGATCA 3 cut(s) 853, 1015, 1282
BcoDI GTCTC 6 cut(s) 295, 458, 506, 870, 1091, 1128
BfaI CTAG 2 cut(s) 1122, 1229
BfmI CTRYAG 3 cut(s) 600, 786, 897
BfoI RGCGCY 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 1315
BfuI GTATCC 1 cut(s) 401
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 5 cut(s) 34, 147, 182, 374, 867
BlsI GCNGC 5 cut(s) 35, 148, 183, 375, 868
Bme1390I CCNGG 2 cut(s) 530, 813
Bme18I GGWCC 2 cut(s) 116, 393
BmeRI GACNNNNNGTC 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 3 cut(s) 116, 349, 393
BmiI GGNNCC 5 cut(s) 118, 351, 394, 631, 817
BmrFI CCNGG 2 cut(s) 530, 813
BmrI ACTGGG 1 cut(s) 1282
BmtI GCTAGC 1 cut(s) 1125
BmuI ACTGGG 1 cut(s) 1282
Bpu10I CCTNAGC 2 cut(s) 820, 1139
BsaHI GRCGYC 1 cut(s) 191
BsaI GGTCTC 2 cut(s) 870, 1128
BsaJI CCNNGG 3 cut(s) 144, 182, 345
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 275, 305
Bsc4I CCNNNNNNNGG 5 cut(s) 105, 312, 357, 899, 1297
Bse1I ACTGG 2 cut(s) 990, 1277
Bse3DI GCAATG 1 cut(s) 368
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 2 cut(s) 530, 813
BseDI CCNNGG 3 cut(s) 144, 182, 345
BseLI CCNNNNNNNGG 5 cut(s) 105, 312, 357, 899, 1297
BseMI GCAATG 1 cut(s) 368
BseMII CTCAG 7 cut(s) 368, 414, 680, 773, 834, 1044, 1153
BseNI ACTGG 2 cut(s) 990, 1277
BsePI GCGCGC 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 2 cut(s) 300, 634
BseXI GCAGC 3 cut(s) 20, 360, 853
Bsh1236I CGCG 6 cut(s) 136, 138, 146, 151, 184, 201
BshFI GGCC 3 cut(s) 56, 236, 350
BshNI GGYRCC 2 cut(s) 629, 815
BsiHKAI GWGCWC 2 cut(s) 282, 727
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 3 cut(s) 102, 406, 1289
BslI CCNNNNNNNGG 5 cut(s) 105, 312, 357, 899, 1297
BsmAI GTCTC 6 cut(s) 295, 458, 506, 870, 1091, 1128
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 3 cut(s) 102, 406, 1289
BsnI GGCC 3 cut(s) 56, 236, 350
Bso31I GGTCTC 2 cut(s) 870, 1128
Bsp1286I GDGCHC 4 cut(s) 282, 300, 634, 727
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 4 cut(s) 412, 853, 1015, 1282
BspACI CCGC 9 cut(s) 124, 144, 146, 182, 184, 199, 270, 334, 1177
BspANI GGCC 3 cut(s) 56, 236, 350
BspCNI CTCAG 7 cut(s) 367, 415, 679, 772, 833, 1045, 1152
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 6 cut(s) 136, 138, 146, 151, 184, 201
BspLI GGNNCC 5 cut(s) 118, 351, 394, 631, 817
BspMAI CTGCAG 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 1315
BspOI GCTAGC 1 cut(s) 1125
BspT107I GGYRCC 2 cut(s) 629, 815
BspTNI GGTCTC 2 cut(s) 870, 1128
BsrDI GCAATG 1 cut(s) 368
BsrI ACTGG 2 cut(s) 990, 1277
BssECI CCNNGG 3 cut(s) 144, 182, 345
BssHII GCGCGC 1 cut(s) 136
BssMI GATC 4 cut(s) 412, 853, 1015, 1282
BssNAI GTATAC 1 cut(s) 890
BssNI GRCGYC 1 cut(s) 191
BssSI CACGAG 1 cut(s) 726
BssT1I CCWWGG 1 cut(s) 345
Bst1107I GTATAC 1 cut(s) 890
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 2 cut(s) 530, 813
Bst4CI ACNGT 2 cut(s) 898, 1197
Bst6I CTCTTC 1 cut(s) 1290
BstACI GRCGYC 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 138, 318, 1123
BstDEI CTNAG 9 cut(s) 354, 423, 573, 666, 759, 820, 1053, 1093, 1139
BstDSI CCRYGG 2 cut(s) 144, 182
BstENI CCTNNNNNAGG 1 cut(s) 1295
BstFNI CGCG 6 cut(s) 136, 138, 146, 151, 184, 201
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 5 cut(s) 38, 138, 140, 151, 330
BstKTI GATC 4 cut(s) 415, 856, 1018, 1285
BstMAI GTCTC 6 cut(s) 295, 458, 506, 870, 1091, 1128
BstMBI GATC 4 cut(s) 412, 853, 1015, 1282
BstMWI GCNNNNNNNGC 4 cut(s) 30, 146, 157, 599
BstNI CCWGG 2 cut(s) 530, 813
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 2 cut(s) 528, 811
BstSFI CTRYAG 3 cut(s) 600, 786, 897
BstSLI GKGCMC 2 cut(s) 300, 634
BstUI CGCG 6 cut(s) 136, 138, 146, 151, 184, 201
BstV1I GCAGC 3 cut(s) 20, 360, 853
BstZ17I GTATAC 1 cut(s) 890
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 3 cut(s) 56, 236, 350
BtgI CCRYGG 2 cut(s) 144, 182
BtgZI GCGATG 2 cut(s) 60, 162
BtrI CACGTC 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 19, 1193
BveI ACCTGC 1 cut(s) 1315
Cac8I GCNNGC 3 cut(s) 138, 318, 1123
CfoI GCGC 5 cut(s) 38, 138, 140, 151, 330
Cfr13I GGNCC 3 cut(s) 116, 349, 393
Cfr42I CCGCGG 2 cut(s) 147, 185
CseI GACGC 4 cut(s) 140, 180, 190, 1202
CviAII CATG 4 cut(s) 445, 468, 506, 542
DdeI CTNAG 9 cut(s) 354, 423, 573, 666, 759, 820, 1053, 1093, 1139
DpnI GATC 4 cut(s) 414, 855, 1017, 1284
DpnII GATC 4 cut(s) 412, 853, 1015, 1282
DriI GACNNNNNGTC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 1290
Eam1105I GACNNNNNGTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 1290
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 2 cut(s) 870, 1128
Eco47I GGWCC 2 cut(s) 116, 393
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoNI CCTNNNNNAGG 1 cut(s) 1295
EcoO109I RGGNCCY 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 528, 811
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 4 cut(s) 448, 471, 509, 545
FalI AAGNNNNNCTT 4 cut(s) 864, 896, 1200, 1232
FaqI GGGAC 3 cut(s) 102, 406, 1289
FatI CATG 4 cut(s) 444, 467, 505, 541
FbaI TGATCA 3 cut(s) 853, 1015, 1282
FblI GTMKAC 1 cut(s) 889
Fnu4HI GCNGC 5 cut(s) 34, 147, 182, 374, 867
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 5 cut(s) 34, 147, 182, 374, 867
FspBI CTAG 2 cut(s) 1122, 1229
GlaI GCGC 5 cut(s) 37, 137, 139, 150, 329
GluI GCNGC 5 cut(s) 34, 147, 182, 374, 867
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 3 cut(s) 56, 236, 350
HapII CCGG 1 cut(s) 248
HgaI GACGC 4 cut(s) 140, 180, 190, 1202
HhaI GCGC 5 cut(s) 38, 138, 140, 151, 330
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 4 cut(s) 448, 471, 509, 545
Hin6I GCGC 5 cut(s) 36, 136, 138, 149, 328
HinP1I GCGC 5 cut(s) 36, 136, 138, 149, 328
HindIII AAGCTT 2 cut(s) 242, 1079
HpaII CCGG 1 cut(s) 248
HphI GGTGA 3 cut(s) 60, 356, 989
Hpy166II GTNNAC 2 cut(s) 841, 890
Hpy188III TCNNGA 3 cut(s) 248, 422, 476
Hpy8I GTNNAC 2 cut(s) 841, 890
Hpy99I CGWCG 9 cut(s) 85, 88, 91, 94, 156, 169, 196, 262, 278
HpyAV CCTTC 3 cut(s) 50, 974, 1163
HpyCH4III ACNGT 2 cut(s) 898, 1197
HpyCH4IV ACGT 3 cut(s) 59, 288, 439
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 146, 157, 599
HpyF3I CTNAG 9 cut(s) 354, 423, 573, 666, 759, 820, 1053, 1093, 1139
HpySE526I ACGT 3 cut(s) 59, 288, 439
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 4 cut(s) 448, 471, 509, 545
HspAI GCGC 5 cut(s) 36, 136, 138, 149, 328
Kpn2I TCCGGA 1 cut(s) 247
Ksp22I TGATCA 3 cut(s) 853, 1015, 1282
KspI CCGCGG 2 cut(s) 147, 185
Kzo9I GATC 4 cut(s) 412, 853, 1015, 1282
LmnI GCTCC 4 cut(s) 285, 590, 683, 776
Lsp1109I GCAGC 3 cut(s) 20, 360, 853
MaeI CTAG 2 cut(s) 1122, 1229
MaeII ACGT 3 cut(s) 59, 288, 439
MaeIII GTNAC 3 cut(s) 66, 440, 919
MalI GATC 4 cut(s) 414, 855, 1017, 1284
MboI GATC 4 cut(s) 412, 853, 1015, 1282
MboII GAAGA 7 cut(s) 3, 35, 38, 1178, 1212, 1244, 1307
MfeI CAATTG 1 cut(s) 402
MhlI GDGCHC 4 cut(s) 282, 300, 634, 727
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 5 cut(s) 15, 402, 1006, 1020, 1161
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 6 cut(s) 103, 233, 296, 434, 508, 542
Mox20I TGGCCA 1 cut(s) 56
MroI TCCGGA 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 1236
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 4 cut(s) 146, 184, 866, 1177
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 2 cut(s) 530, 813
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 2 cut(s) 530, 813
MvnI CGCG 6 cut(s) 136, 138, 146, 151, 184, 201
MwoI GCNNNNNNNGC 4 cut(s) 30, 146, 157, 599
NdeII GATC 4 cut(s) 412, 853, 1015, 1282
NheI GCTAGC 1 cut(s) 1121
NlaIII CATG 4 cut(s) 448, 471, 509, 545
NlaIV GGNNCC 5 cut(s) 118, 351, 394, 631, 817
NmuCI GTSAC 2 cut(s) 66, 919
NspI RCATGY 1 cut(s) 448
PauI GCGCGC 1 cut(s) 136
PciI ACATGT 1 cut(s) 444
PcsI WCGNNNNNNNCGW 2 cut(s) 83, 98
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 4 cut(s) 361, 563, 908, 1040
PflFI GACNNNGTC 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 528
PkrI GCNGC 5 cut(s) 35, 148, 183, 375, 868
PleI GAGTC 6 cut(s) 103, 232, 296, 433, 507, 541
PpsI GAGTC 6 cut(s) 103, 232, 296, 433, 507, 541
PscI ACATGT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 2 cut(s) 528, 811
PspGI CCWGG 2 cut(s) 528, 811
PspN4I GGNNCC 5 cut(s) 118, 351, 394, 631, 817
PspPI GGNCC 3 cut(s) 116, 349, 393
PstI CTGCAG 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 190
PteI GCGCGC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 866
SacI GAGCTC 1 cut(s) 282
SacII CCGCGG 2 cut(s) 147, 185
SatI GCNGC 5 cut(s) 34, 147, 182, 374, 867
Sau3AI GATC 4 cut(s) 412, 853, 1015, 1282
Sau96I GGNCC 3 cut(s) 116, 349, 393
SchI GAGTC 6 cut(s) 103, 233, 296, 434, 508, 542
ScrFI CCNGG 2 cut(s) 530, 813
SduI GDGCHC 4 cut(s) 282, 300, 634, 727
SfcI CTRYAG 3 cut(s) 600, 786, 897
Sfr303I CCGCGG 2 cut(s) 147, 185
SgrBI CCGCGG 2 cut(s) 147, 185
SinI GGWCC 2 cut(s) 116, 393
Sse9I AATT 5 cut(s) 15, 402, 1006, 1020, 1161
SsiI CCGC 9 cut(s) 124, 144, 146, 182, 184, 199, 270, 334, 1177
SspMI CTAG 2 cut(s) 1122, 1229
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 528, 811
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 898, 1197
TaiI ACGT 3 cut(s) 62, 291, 442
TaqI TCGA 3 cut(s) 227, 260, 477
TaqII GACCGA 1 cut(s) 104
TasI AATT 5 cut(s) 15, 402, 1006, 1020, 1161
TauI GCSGC 2 cut(s) 149, 184
TfiI GAWTC 4 cut(s) 361, 563, 908, 1040
TscAI CASTG 2 cut(s) 26, 1200
TseFI GTSAC 2 cut(s) 66, 919
TseI GCWGC 3 cut(s) 33, 373, 866
Tsp45I GTSAC 2 cut(s) 66, 919
TspDTI ATGAA 1 cut(s) 522
TspGWI ACGGA 2 cut(s) 283, 907
TspRI CASTG 2 cut(s) 26, 1200
Tth111I GACNNNGTC 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 116, 393
XagI CCTNNNNNAGG 1 cut(s) 1295
XapI RAATTY 1 cut(s) 1020
XceI RCATGY 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 889
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 2 cut(s) 1122, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.