Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8521181.1

Orthogroup ID

OG0004568

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1124

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8521181.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 497 bp

accccgcccaggctctcaatgtccctgttgttcctttggggacattattggcagcggcttatcctctctcatcccgccctccttatgtcttatcttggctcaatgatctgatttcagcacagggcatgatgcatccagaattattgaaaaagctggttttgaataacttttgcacaataccagcaaaacttctgttgcagctaacaacagcttttaaggagggtggattacgtgacaggagtggcacctacttgtttaaggatcatatacataaaagcaatgtccctattttggctcttgctggagataaggatctaatatgccctcctgaagctgttgaagaaactgttaaggtaataccagagcacctggttacatataaagtttttggagaatctggaggtgcacactatgctcattatgatttggtaggaggccgaatggcagcagagcaagtctatccctgtataattgaatttctaagtcagcacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4

Protein Analysis

164

Amino Acids

17.97

Weight (kDa)

6.16

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15060 AT1G15060 AT1G15060
fragaria_vesca	FvH4_4g26690 FvH4_4g26690 FvH4_4g26690 FvH4_4g26690
malus_domestica	MD13G1035100.v1.1 MD16G1037000.v1.1
prunus_persica	Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1
pyrus_communis	pycom13g03070 pycom16g03190 pycom16g03200
rosa_chinensis	RchiOBHm_Chr4g0434381
rosa_laevigata	RLG00000006676
rosa_multiflora	Rmu_co8395383.1_g000001 Rmu_co8521181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375740
rosa_samantha	Rh4AG331600 Rh4AG331700 Rh4DG334600 Rh4DG334700
rosa_wichuraiana	Rw4G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AciI	CCGC	3 cut(s)	5, 55, 75
AclWI	GGATC	2 cut(s)	269, 320
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	9, 291
AgsI	TTSAA	4 cut(s)	147, 162, 340, 475
AjnI	CCWGG	2 cut(s)	8, 368
AluBI	AGCT	4 cut(s)	153, 201, 211, 334
AluI	AGCT	4 cut(s)	153, 201, 211, 334
Alw21I	GWGCWC	2 cut(s)	368, 408
Alw44I	GTGCAC	1 cut(s)	404
AlwI	GGATC	2 cut(s)	269, 320
AoxI	GGCC	1 cut(s)	435
ApaLI	GTGCAC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	52, 198, 445
ApoI	RAATTY	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	244
Bbv12I	GWGCWC	2 cut(s)	368, 408
BbvI	GCAGC	3 cut(s)	64, 210, 457
BciT130I	CCWGG	2 cut(s)	10, 370
BisI	GCNGC	4 cut(s)	53, 56, 199, 446
BlsI	GCNGC	4 cut(s)	54, 57, 200, 447
Bme1390I	CCNGG	2 cut(s)	10, 370
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	10, 370
BmsI	GCATC	2 cut(s)	119, 141
BpmI	CTGGAG	2 cut(s)	323, 419
BsaAI	YACGTR	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	9, 291
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	10, 370
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	70, 132
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	9, 291
BseMI	GCAATG	1 cut(s)	285
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	3 cut(s)	64, 210, 457
BshFI	GGCC	1 cut(s)	437
BshNI	GGYRCC	1 cut(s)	244
BsiHKAI	GWGCWC	2 cut(s)	368, 408
BslFI	GGGAC	3 cut(s)	7, 54, 268
BslI	CCNNNNNNNGG	2 cut(s)	9, 291
BsmFI	GGGAC	3 cut(s)	7, 54, 268
BsnI	GGCC	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	368, 408
Bsp143I	GATC	3 cut(s)	105, 261, 312
BspACI	CCGC	3 cut(s)	5, 55, 75
BspANI	GGCC	1 cut(s)	437
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	269, 320
BspT107I	GGYRCC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	3 cut(s)	105, 261, 312
Bst2UI	CCWGG	2 cut(s)	10, 370
Bst4CI	ACNGT	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	70, 132
BstKTI	GATC	3 cut(s)	108, 264, 315
BstMBI	GATC	3 cut(s)	105, 261, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	2 cut(s)	10, 370
BstSCI	CCNGG	2 cut(s)	8, 368
BstSLI	GKGCMC	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	64, 210, 457
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	70, 132
CsiI	ACCWGGT	1 cut(s)	368
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	9 cut(s)	13, 58, 99, 153, 201, 211, 295, 334, 437
CviKI_1	RGCY	9 cut(s)	13, 58, 99, 153, 201, 211, 295, 334, 437
DdeI	CTNAG	1 cut(s)	481
DpnI	GATC	3 cut(s)	107, 263, 314
DpnII	GATC	3 cut(s)	105, 261, 312
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	8, 368
EcoT22I	ATGCAT	1 cut(s)	134
FaeI	CATG	1 cut(s)	129
FaqI	GGGAC	3 cut(s)	7, 54, 268
FatI	CATG	1 cut(s)	125
FauI	CCCGC	2 cut(s)	12, 82
Fnu4HI	GCNGC	4 cut(s)	53, 56, 199, 446
FokI	GGATG	2 cut(s)	57, 119
Fsp4HI	GCNGC	4 cut(s)	53, 56, 199, 446
GluI	GCNGC	4 cut(s)	53, 56, 199, 446
GsuI	CTGGAG	2 cut(s)	323, 419
HaeIII	GGCC	1 cut(s)	437
Hin1II	CATG	1 cut(s)	129
HinfI	GANTC	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	3 cut(s)	136, 328, 398
Hpy8I	GTNNAC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	132, 173, 198, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	481
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	105, 261, 312
Lsp1109I	GCAGC	3 cut(s)	64, 210, 457
LweI	GCATC	2 cut(s)	119, 141
MabI	ACCWGGT	1 cut(s)	368
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	232, 372
MalI	GATC	3 cut(s)	107, 263, 314
MboI	GATC	3 cut(s)	105, 261, 312
MboII	GAAGA	1 cut(s)	352
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	368, 408
MluCI	AATT	3 cut(s)	139, 470, 475
MnlI	CCTC	6 cut(s)	74, 89, 213, 335, 394, 427
Mph1103I	ATGCAT	1 cut(s)	134
MseI	TTAA	3 cut(s)	215, 257, 350
MspA1I	CMGCKG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	10, 370
MvaI	CCWGG	2 cut(s)	10, 370
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeII	GATC	3 cut(s)	105, 261, 312
NlaIII	CATG	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	54, 57, 200, 447
Ppu21I	YACGTR	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	8, 368
PspGI	CCWGG	2 cut(s)	8, 368
PspN4I	GGNNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	215, 257, 350
SatI	GCNGC	4 cut(s)	53, 56, 199, 446
Sau3AI	GATC	3 cut(s)	105, 261, 312
ScrFI	CCNGG	2 cut(s)	10, 370
SduI	GDGCHC	2 cut(s)	368, 408
SetI	ASST	9 cut(s)	155, 203, 213, 234, 250, 336, 356, 371, 405
SexAI	ACCWGGT	1 cut(s)	368
SfaNI	GCATC	2 cut(s)	119, 141
Sse9I	AATT	3 cut(s)	139, 470, 475
SsiI	CCGC	3 cut(s)	5, 55, 75
StyD4I	CCNGG	2 cut(s)	8, 368
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	1 cut(s)	234
TasI	AATT	3 cut(s)	139, 470, 475
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	3 cut(s)	215, 257, 350
Tru9I	TTAA	3 cut(s)	215, 257, 350
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	52, 198, 445
Tsp45I	GTSAC	1 cut(s)	232
VneI	GTGCAC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.