Rroxscaffold_5G00375740

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
56509040 .. 56513802
4763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375740.1

Sequence Viewer

Length: 1266 bp
ATGGCTTCTTCTTCAATTCACTACGATATTCGCTGCGCCCTTCTTCTTCGCTTGGCCACGTCATCTTCATCATCGCCGTCGTCGCTATCCACGATTAGGACTCTCAGTCCCCACCGCATCACCTCGCGCGCCTCCGCGGCGCGTCGGGTGCTGTCGTCGTTCTCCTCATCGCCGCGGACGACGTCGTTCCGCGTCAGAGCTTTCTCCAATGACGAGTCGAAAGAGGCCGTGAAGCTTCCGGACAAGCCGTCCATATGCACCGCCGACGAGCTCCACTACGTCTCCGTGCCCGACTCCGATTGGAGGCTCGCCCTCTGGCGCTACCGCCCTTGCCCCAAGGCCCCTCAGAGGAATCACCCATTGCTGCTATTGTCTGGGGTGGGGACCAATGCAATTGGATATGATCTCTCTCCTGAGTCGTCATTTGCACGTTACATGTCTGGGCAAGGATTTGAGACATGGGTTCTCGAAGTTCGTGGTGCTGGATTGAGTGTTCATGAAGCAAATAGGAAACTAATCCAGGAATCTGCCCATGCAAAATCTGAACAAATGGAATCTGTGTCTAAGGGTGCAACAAATGGAGCTTTTTCTGCAGAAAAACAGTCAAATAGCTTCTCTGGTGCCACTGCAAAATCTGAACAGATGGAAGCTGTTTCTCAGAGTGCAACTGATGGAGCTATTTCTACAGAAAAGCAATCAAATAGTTTTCCTGGTGCCTCAGCATTTGAAACTCCTGTTCACAAAATAAATGATCAGATTTCAGCTGCCAAAGGAGACCTTACAAGTATACCAACTGTAGGGGGCGAATCAAAATCCGTGACAAGTTTGACTGAAACTTTTACGCAGATGTCAGAACGATTGTCTGGCTTTCTTGGTGAAGGTCAATCCAGTATCATCTCTGCTAATTTACTTGATCAAATTTCAAAACTTTTTGCTGATTCTACCTTATCTGAGCGTTTCAATGATATAAGCAATAAGCTTTCAAGCCTGTTAGAGACAAGACAAAACTCTGCTATTGCTAGCCAAATCAGAGACCTCAGTCAAAGGCTTGTGAATATAATTGAAGAAGGTCAGCGGTCTGTTTCTCCATCACTGTTTGACTTGCAAGAGCGTCTTTCTTCCACACTAGAAGATTTTCAGAAGCAACTTGACTTGATAGTGAAGTATGACTGGGACTTTGATCACTACCTTGAAGAGGATATACCTGCTGTGGTGAGATGGAGTATATATTGGCAGAAAGTAAGCCGAAGGATGGGAAGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

421

Amino Acids

46.24

Weight (kDa)

6.28

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 1213
AccB1I GGYRCC 2 cut(s) 620, 713
AccI GTMKAC 1 cut(s) 787
AccII CGCG 6 cut(s) 127, 129, 137, 142, 175, 192
AccIII TCCGGA 1 cut(s) 238
AciI CCGC 9 cut(s) 115, 135, 137, 173, 175, 190, 261, 325, 1075
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 182
AfiI CCNNNNNNNGG 6 cut(s) 96, 303, 348, 797, 1195, 1252
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 7 cut(s) 15, 728, 924, 961, 984, 1064, 1193
AhdI GACNNNNNGTC 2 cut(s) 105, 247
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 2 cut(s) 519, 709
AloI GAACNNNNNNTCC 2 cut(s) 477, 509
AluBI AGCT 9 cut(s) 200, 235, 271, 584, 612, 650, 677, 764, 979
AluI AGCT 9 cut(s) 200, 235, 271, 584, 612, 650, 677, 764, 979
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 5 cut(s) 286, 449, 768, 989, 1026
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 3 cut(s) 54, 225, 339
ApeKI GCWGC 3 cut(s) 33, 364, 764
ApoI RAATTY 1 cut(s) 918
ArsI GACNNNNNNTTYG 2 cut(s) 1160, 1192
Asp700I GAANNNNTTC 1 cut(s) 1134
AspLEI GCGC 5 cut(s) 38, 129, 131, 142, 321
AspS9I GGNCC 2 cut(s) 340, 384
AsuHPI GGTGA 4 cut(s) 112, 347, 887, 1225
AsuNHI GCTAGC 1 cut(s) 1019
AvaII GGWCC 1 cut(s) 384
BaeGI GKGCMC 1 cut(s) 291
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 2 cut(s) 620, 713
BanII GRGCYC 1 cut(s) 273
BarI GAAGNNNNNNTAC 2 cut(s) 1185, 1217
Bbv12I GWGCWC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 718
BbvI GCAGC 3 cut(s) 20, 351, 751
BccI CCATC 5 cut(s) 637, 665, 1096, 1212, 1246
BceAI ACGGC 3 cut(s) 61, 212, 232
BciT130I CCWGG 2 cut(s) 521, 711
BclI TGATCA 3 cut(s) 751, 913, 1180
BcoDI GTCTC 5 cut(s) 286, 449, 768, 989, 1026
BfaI CTAG 2 cut(s) 1020, 1127
BfmI CTRYAG 3 cut(s) 591, 684, 795
BfoI RGCGCY 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 1213
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 5 cut(s) 34, 138, 173, 365, 765
BlsI GCNGC 5 cut(s) 35, 139, 174, 366, 766
Bme1390I CCNGG 2 cut(s) 521, 711
Bme18I GGWCC 1 cut(s) 384
BmeRI GACNNNNNGTC 2 cut(s) 105, 247
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 340, 384
BmiI GGNNCC 4 cut(s) 342, 385, 622, 715
BmrFI CCNGG 2 cut(s) 521, 711
BmrI ACTGGG 1 cut(s) 1180
BmsI GCATC 1 cut(s) 126
BmtI GCTAGC 1 cut(s) 1023
BmuI ACTGGG 1 cut(s) 1180
BoxI GACNNNNGTC 1 cut(s) 1038
Bpu10I CCTNAGC 1 cut(s) 718
BsaHI GRCGYC 1 cut(s) 182
BsaI GGTCTC 2 cut(s) 768, 1026
BsaJI CCNNGG 3 cut(s) 135, 173, 336
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 6 cut(s) 96, 303, 348, 797, 1195, 1252
Bse1I ACTGG 2 cut(s) 888, 1175
Bse3DI GCAATG 1 cut(s) 359
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 2 cut(s) 521, 711
BseDI CCNNGG 3 cut(s) 135, 173, 336
BseGI GGATG 1 cut(s) 1257
BseLI CCNNNNNNNGG 6 cut(s) 96, 303, 348, 797, 1195, 1252
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 7 cut(s) 118, 359, 405, 671, 732, 942, 1051
BseNI ACTGG 2 cut(s) 888, 1175
BsePI GCGCGC 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 3 cut(s) 20, 351, 751
Bsh1236I CGCG 6 cut(s) 127, 129, 137, 142, 175, 192
BshFI GGCC 3 cut(s) 56, 227, 341
BshNI GGYRCC 2 cut(s) 620, 713
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 3 cut(s) 93, 397, 1187
BslI CCNNNNNNNGG 6 cut(s) 96, 303, 348, 797, 1195, 1252
BsmAI GTCTC 5 cut(s) 286, 449, 768, 989, 1026
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 3 cut(s) 93, 397, 1187
BsnI GGCC 3 cut(s) 56, 227, 341
Bso31I GGTCTC 2 cut(s) 768, 1026
Bsp1286I GDGCHC 2 cut(s) 273, 291
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 4 cut(s) 403, 751, 913, 1180
BspACI CCGC 9 cut(s) 115, 135, 137, 173, 175, 190, 261, 325, 1075
BspANI GGCC 3 cut(s) 56, 227, 341
BspCNI CTCAG 7 cut(s) 117, 358, 406, 670, 731, 943, 1050
BspEI TCCGGA 1 cut(s) 238
BspFNI CGCG 6 cut(s) 127, 129, 137, 142, 175, 192
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 4 cut(s) 342, 385, 622, 715
BspMAI CTGCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 1213
BspOI GCTAGC 1 cut(s) 1023
BspT107I GGYRCC 2 cut(s) 620, 713
BspTNI GGTCTC 2 cut(s) 768, 1026
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 2 cut(s) 888, 1175
BssECI CCNNGG 3 cut(s) 135, 173, 336
BssHII GCGCGC 1 cut(s) 127
BssMI GATC 4 cut(s) 403, 751, 913, 1180
BssNAI GTATAC 1 cut(s) 788
BssNI GRCGYC 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 336
Bst1107I GTATAC 1 cut(s) 788
Bst2UI CCWGG 2 cut(s) 521, 711
Bst4CI ACNGT 3 cut(s) 603, 796, 1095
Bst6I CTCTTC 1 cut(s) 1188
BstACI GRCGYC 1 cut(s) 182
BstC8I GCNNGC 3 cut(s) 129, 309, 1021
BstDEI CTNAG 8 cut(s) 104, 345, 414, 564, 657, 718, 951, 1037
BstDSI CCRYGG 2 cut(s) 135, 173
BstENI CCTNNNNNAGG 1 cut(s) 1193
BstF5I GGATG 1 cut(s) 1257
BstFNI CGCG 6 cut(s) 127, 129, 137, 142, 175, 192
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 5 cut(s) 38, 129, 131, 142, 321
BstKTI GATC 4 cut(s) 406, 754, 916, 1183
BstMAI GTCTC 5 cut(s) 286, 449, 768, 989, 1026
BstMBI GATC 4 cut(s) 403, 751, 913, 1180
BstMWI GCNNNNNNNGC 4 cut(s) 82, 137, 148, 590
BstNI CCWGG 2 cut(s) 521, 711
BstNSI RCATGY 1 cut(s) 439
BstPAI GACNNNNGTC 1 cut(s) 1038
BstSCI CCNGG 2 cut(s) 519, 709
BstSFI CTRYAG 3 cut(s) 591, 684, 795
BstSLI GKGCMC 1 cut(s) 291
BstUI CGCG 6 cut(s) 127, 129, 137, 142, 175, 192
BstV1I GCAGC 3 cut(s) 20, 351, 751
BstZ17I GTATAC 1 cut(s) 788
BsuRI GGCC 3 cut(s) 56, 227, 341
BtgI CCRYGG 2 cut(s) 135, 173
BtgZI GCGATG 2 cut(s) 57, 153
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 1257
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 624, 1091
BveI ACCTGC 1 cut(s) 1213
Cac8I GCNNGC 3 cut(s) 129, 309, 1021
CciI TCATGA 1 cut(s) 496
CfoI GCGC 5 cut(s) 38, 129, 131, 142, 321
Cfr13I GGNCC 2 cut(s) 340, 384
Cfr42I CCGCGG 2 cut(s) 138, 176
CseI GACGC 3 cut(s) 131, 181, 1100
CviAII CATG 4 cut(s) 436, 459, 497, 533
DdeI CTNAG 8 cut(s) 104, 345, 414, 564, 657, 718, 951, 1037
DpnI GATC 4 cut(s) 405, 753, 915, 1182
DpnII GATC 4 cut(s) 403, 751, 913, 1180
DriI GACNNNNNGTC 2 cut(s) 105, 247
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 1188
Eam1105I GACNNNNNGTC 2 cut(s) 105, 247
EarI CTCTTC 1 cut(s) 1188
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 2 cut(s) 768, 1026
Eco47I GGWCC 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 1193
EcoO109I RGGNCCY 1 cut(s) 340
EcoRII CCWGG 2 cut(s) 519, 709
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 4 cut(s) 439, 462, 500, 536
FalI AAGNNNNNCTT 4 cut(s) 762, 794, 1098, 1130
FaqI GGGAC 3 cut(s) 93, 397, 1187
FatI CATG 4 cut(s) 435, 458, 496, 532
FauNDI CATATG 1 cut(s) 254
FbaI TGATCA 3 cut(s) 751, 913, 1180
FblI GTMKAC 1 cut(s) 787
Fnu4HI GCNGC 5 cut(s) 34, 138, 173, 365, 765
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 5 cut(s) 34, 138, 173, 365, 765
FspBI CTAG 2 cut(s) 1020, 1127
GlaI GCGC 5 cut(s) 37, 128, 130, 141, 320
GluI GCNGC 5 cut(s) 34, 138, 173, 365, 765
HaeII RGCGCY 1 cut(s) 322
HaeIII GGCC 3 cut(s) 56, 227, 341
HapII CCGG 1 cut(s) 239
HgaI GACGC 3 cut(s) 131, 181, 1100
HhaI GCGC 5 cut(s) 38, 129, 131, 142, 321
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 4 cut(s) 439, 462, 500, 536
Hin6I GCGC 5 cut(s) 36, 127, 129, 140, 319
HinP1I GCGC 5 cut(s) 36, 127, 129, 140, 319
HindIII AAGCTT 2 cut(s) 233, 977
HinfI GANTC 9 cut(s) 100, 215, 293, 352, 416, 524, 554, 806, 938
HpaII CCGG 1 cut(s) 239
HphI GGTGA 4 cut(s) 112, 347, 887, 1225
Hpy166II GTNNAC 2 cut(s) 739, 788
Hpy188III TCNNGA 4 cut(s) 239, 413, 467, 497
Hpy8I GTNNAC 2 cut(s) 739, 788
Hpy99I CGWCG 7 cut(s) 82, 85, 147, 160, 184, 187, 269
HpyAV CCTTC 4 cut(s) 50, 872, 1061, 1242
HpyCH4III ACNGT 3 cut(s) 603, 796, 1095
HpyCH4IV ACGT 4 cut(s) 59, 182, 279, 430
HpyCH4V TGCA 9 cut(s) 258, 392, 428, 536, 572, 593, 629, 665, 1105
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 137, 148, 590
HpyF3I CTNAG 8 cut(s) 104, 345, 414, 564, 657, 718, 951, 1037
HpySE526I ACGT 4 cut(s) 59, 182, 279, 430
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 4 cut(s) 439, 462, 500, 536
HspAI GCGC 5 cut(s) 36, 127, 129, 140, 319
Kpn2I TCCGGA 1 cut(s) 238
Ksp22I TGATCA 3 cut(s) 751, 913, 1180
KspI CCGCGG 2 cut(s) 138, 176
Kzo9I GATC 4 cut(s) 403, 751, 913, 1180
LmnI GCTCC 3 cut(s) 276, 581, 674
Lsp1109I GCAGC 3 cut(s) 20, 351, 751
LweI GCATC 1 cut(s) 126
MaeI CTAG 2 cut(s) 1020, 1127
MaeII ACGT 4 cut(s) 59, 182, 279, 430
MaeIII GTNAC 2 cut(s) 431, 817
MalI GATC 4 cut(s) 405, 753, 915, 1182
MboI GATC 4 cut(s) 403, 751, 913, 1180
MboII GAAGA 8 cut(s) 3, 35, 38, 57, 1076, 1110, 1142, 1205
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 2 cut(s) 273, 291
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 5 cut(s) 15, 393, 904, 918, 1059
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 4 cut(s) 94, 224, 287, 425
Mox20I TGGCCA 1 cut(s) 56
MroI TCCGGA 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 1134
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 4 cut(s) 137, 175, 764, 1075
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 521, 711
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 2 cut(s) 521, 711
MvnI CGCG 6 cut(s) 127, 129, 137, 142, 175, 192
MwoI GCNNNNNNNGC 4 cut(s) 82, 137, 148, 590
NdeI CATATG 1 cut(s) 254
NdeII GATC 4 cut(s) 403, 751, 913, 1180
NheI GCTAGC 1 cut(s) 1019
NlaIII CATG 4 cut(s) 439, 462, 500, 536
NlaIV GGNNCC 4 cut(s) 342, 385, 622, 715
NmuCI GTSAC 1 cut(s) 817
NspI RCATGY 1 cut(s) 439
PagI TCATGA 1 cut(s) 496
PauI GCGCGC 1 cut(s) 127
PciI ACATGT 1 cut(s) 435
PcsI WCGNNNNNNNCGW 2 cut(s) 89, 176
PdmI GAANNNNTTC 1 cut(s) 1134
PfeI GAWTC 5 cut(s) 352, 524, 554, 806, 938
PflFI GACNNNGTC 1 cut(s) 181
PfoI TCCNGGA 1 cut(s) 519
PkrI GCNGC 5 cut(s) 35, 139, 174, 366, 766
PleI GAGTC 4 cut(s) 94, 223, 287, 424
PpsI GAGTC 4 cut(s) 94, 223, 287, 424
PscI ACATGT 1 cut(s) 435
PshAI GACNNNNGTC 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 519, 709
PspGI CCWGG 2 cut(s) 519, 709
PspN4I GGNNCC 4 cut(s) 342, 385, 622, 715
PspPI GGNCC 2 cut(s) 340, 384
PstI CTGCAG 1 cut(s) 595
PsyI GACNNNGTC 1 cut(s) 181
PteI GCGCGC 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 764
SacI GAGCTC 1 cut(s) 273
SacII CCGCGG 2 cut(s) 138, 176
SatI GCNGC 5 cut(s) 34, 138, 173, 365, 765
Sau3AI GATC 4 cut(s) 403, 751, 913, 1180
Sau96I GGNCC 2 cut(s) 340, 384
SchI GAGTC 4 cut(s) 94, 224, 287, 425
ScrFI CCNGG 2 cut(s) 521, 711
SduI GDGCHC 2 cut(s) 273, 291
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 3 cut(s) 591, 684, 795
Sfr303I CCGCGG 2 cut(s) 138, 176
SgrBI CCGCGG 2 cut(s) 138, 176
SinI GGWCC 1 cut(s) 384
Sse9I AATT 5 cut(s) 15, 393, 904, 918, 1059
SsiI CCGC 9 cut(s) 115, 135, 137, 173, 175, 190, 261, 325, 1075
SspMI CTAG 2 cut(s) 1020, 1127
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 519, 709
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 3 cut(s) 603, 796, 1095
TaiI ACGT 4 cut(s) 62, 185, 282, 433
TaqI TCGA 2 cut(s) 218, 468
TasI AATT 5 cut(s) 15, 393, 904, 918, 1059
TauI GCSGC 2 cut(s) 140, 175
TfiI GAWTC 5 cut(s) 352, 524, 554, 806, 938
TscAI CASTG 2 cut(s) 631, 1098
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 3 cut(s) 33, 364, 764
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 3 cut(s) 57, 485, 513
TspGWI ACGGA 2 cut(s) 274, 805
TspRI CASTG 2 cut(s) 631, 1098
Tth111I GACNNNGTC 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 384
XagI CCTNNNNNAGG 1 cut(s) 1193
XapI RAATTY 1 cut(s) 918
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 787
XmnI GAANNNNTTC 1 cut(s) 1134
XspI CTAG 2 cut(s) 1020, 1127
ZraI GACGTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.