Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004568

Physical Location & Seq

Genomic Coordinates Forward (+)

2089452 .. 2090539

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGGCAATCCAGTACGACATTTGCTGCGCGCTTCTCCTGAATCATCACGCATCGTCGTTATCATCACCATCACCATCGTCATCCACGTCATCGCCGTCGTTATCCACCATTCGGTCCCTCAGCCCCACCCTCCTCGGCTCGCGCGCCTCCGGGGCTCGTCGAGTCCTCTCTCTGTCGACCTCGTGCTGGACGACGTCGTTCCGGCTCAGAGCCTTCTCCACCGACCCCGGAGAGGCCGCCGCCGTCAAACTTCCGGAGAAGCCGTCGATATGCACGGCCGATGAGCTCCACTACGTGTCCGTGCCGAACTCCGATTGGAAGCTCGCGCTCTGGCGATACCACCCGTGCCCCAAGGCGCCTCAGAGGAAACATCCATTGCTGCTATTGTCAGGAGTGGGGACCAACGCCATTGGATATGATCTCTCTCCTGAGTCTTCGTTTGCGCGTTACATGTCTAGGCAAGGATTCGAGACCTGGGTTCTCGAAGTTCGTGGTGCTGGACTGAGCGTGCAAGAATCGGATCAAAAGGAAATTCAGCAATCTGCCCATGAAAGGTCTGAAGAGATGGAAGCTGTTTCTGAGAAGTGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4

Protein Analysis

199

Amino Acids

21.58

Weight (kDa)

7.0

Isoelectric Point (pI)

65.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004568)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15060 AT1G15060 AT1G15060
fragaria_vesca	FvH4_4g26690 FvH4_4g26690 FvH4_4g26690 FvH4_4g26690
malus_domestica	MD13G1035100.v1.1 MD16G1037000.v1.1
prunus_persica	Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1 Prupe.1G317100_v2.0.a1
pyrus_communis	pycom13g03070 pycom16g03190 pycom16g03200
rosa_chinensis	RchiOBHm_Chr4g0434381
rosa_laevigata	RLG00000006676
rosa_multiflora	Rmu_co8395383.1_g000001 Rmu_co8521181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375740
rosa_samantha	Rh4AG331600 Rh4AG331700 Rh4DG334600 Rh4DG334700
rosa_wichuraiana	Rw4G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	5 cut(s)	32, 145, 147, 329, 448
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	3 cut(s)	5, 240, 243
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	1 cut(s)	582
AcyI	GRCGYC	2 cut(s)	197, 359
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	4 cut(s)	114, 189, 235, 555
AflIII	ACRYGT	2 cut(s)	297, 453
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	3 cut(s)	289, 325, 575
AluI	AGCT	3 cut(s)	289, 325, 575
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	531
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	2 cut(s)	237, 279
ApeKI	GCWGC	2 cut(s)	27, 382
ApoI	RAATTY	1 cut(s)	534
AspLEI	GCGC	7 cut(s)	32, 34, 147, 149, 331, 361, 448
AspS9I	GGNCC	2 cut(s)	117, 402
AsuC2I	CCSGG	2 cut(s)	154, 231
AsuHPI	GGTGA	2 cut(s)	60, 66
AvaII	GGWCC	2 cut(s)	117, 402
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	2 cut(s)	160, 291
BauI	CACGAG	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	14, 369
BccI	CCATC	3 cut(s)	79, 85, 562
BceAI	ACGGC	4 cut(s)	82, 230, 250, 294
BciT130I	CCWGG	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	154, 231
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	5 cut(s)	6, 28, 240, 243, 383
BlsI	GCNGC	5 cut(s)	7, 29, 241, 244, 384
Bme1390I	CCNGG	3 cut(s)	154, 231, 478
Bme18I	GGWCC	2 cut(s)	117, 402
BmgBI	CACGTC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	117, 402
BmiI	GGNNCC	3 cut(s)	119, 360, 403
BmrFI	CCNGG	3 cut(s)	154, 231, 478
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	154, 231
BsaAI	YACGTR	1 cut(s)	298
BsaHI	GRCGYC	2 cut(s)	197, 359
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	5 cut(s)	136, 153, 229, 354, 477
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 189, 235, 555
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	377
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	5 cut(s)	136, 153, 229, 354, 477
BseGI	GGATG	2 cut(s)	83, 373
BseLI	CCNNNNNNNGG	4 cut(s)	114, 189, 235, 555
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	6 cut(s)	136, 223, 377, 423, 497, 573
BseNI	ACTGG	1 cut(s)	13
BsePI	GCGCGC	2 cut(s)	30, 145
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	353
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	14, 369
Bsh1236I	CGCG	5 cut(s)	32, 145, 147, 329, 448
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	239, 281
BshNI	GGYRCC	1 cut(s)	358
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	4 cut(s)	153, 205, 231, 257
BslFI	GGGAC	2 cut(s)	103, 415
BslI	CCNNNNNNNGG	4 cut(s)	114, 189, 235, 555
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	103, 415
BsnI	GGCC	2 cut(s)	239, 281
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	160, 291, 353
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	421, 523
BspACI	CCGC	3 cut(s)	5, 240, 243
BspANI	GGCC	2 cut(s)	239, 281
BspCNI	CTCAG	6 cut(s)	135, 222, 376, 424, 498, 574
BspEI	TCCGGA	1 cut(s)	256
BspFNI	CGCG	5 cut(s)	32, 145, 147, 329, 448
BspLI	GGNNCC	3 cut(s)	119, 360, 403
BspPI	GGATC	1 cut(s)	531
BspT107I	GGYRCC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	5 cut(s)	136, 153, 229, 354, 477
BssHII	GCGCGC	2 cut(s)	30, 145
BssMI	GATC	2 cut(s)	421, 523
BssNI	GRCGYC	2 cut(s)	197, 359
BssSI	CACGAG	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	2 cut(s)	197, 359
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	5 cut(s)	32, 143, 147, 327, 512
BstDEI	CTNAG	6 cut(s)	122, 209, 363, 432, 506, 582
BstF5I	GGATG	2 cut(s)	83, 373
BstFNI	CGCG	5 cut(s)	32, 145, 147, 329, 448
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	7 cut(s)	32, 34, 147, 149, 331, 361, 448
BstKTI	GATC	2 cut(s)	424, 526
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	2 cut(s)	421, 523
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	478
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	3 cut(s)	152, 229, 476
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	5 cut(s)	32, 145, 147, 329, 448
BstV1I	GCAGC	2 cut(s)	14, 369
BstV2I	GAAGAC	1 cut(s)	429
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	239, 281
BtgZI	GCGATG	1 cut(s)	78
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	83, 373
Cac8I	GCNNGC	5 cut(s)	32, 143, 147, 327, 512
CfoI	GCGC	7 cut(s)	32, 34, 147, 149, 331, 361, 448
Cfr13I	GGNCC	2 cut(s)	117, 402
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	454, 551
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	6 cut(s)	122, 209, 363, 432, 506, 582
DinI	GGCGCC	1 cut(s)	360
DpnI	GATC	2 cut(s)	423, 525
DpnII	GATC	2 cut(s)	421, 523
DraIII	CACNNNGTG	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	279
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	289
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	2 cut(s)	160, 291
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	117, 402
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	2 cut(s)	160, 291
EgeI	GGCGCC	1 cut(s)	360
EheI	GGCGCC	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	457, 554
FaiI	YATR	4 cut(s)	274, 420, 455, 552
FaqI	GGGAC	2 cut(s)	103, 415
FatI	CATG	2 cut(s)	453, 550
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	5 cut(s)	6, 28, 240, 243, 383
FokI	GGATG	2 cut(s)	70, 360
FriOI	GRGCYC	2 cut(s)	160, 291
Fsp4HI	GCNGC	5 cut(s)	6, 28, 240, 243, 383
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	7 cut(s)	31, 33, 146, 148, 330, 360, 447
GluI	GCNGC	5 cut(s)	6, 28, 240, 243, 383
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	239, 281
HapII	CCGG	4 cut(s)	153, 205, 231, 257
HhaI	GCGC	7 cut(s)	32, 34, 147, 149, 331, 361, 448
Hin1I	GRCGYC	2 cut(s)	197, 359
Hin1II	CATG	2 cut(s)	457, 554
Hin6I	GCGC	7 cut(s)	30, 32, 145, 147, 329, 359, 446
HinP1I	GCGC	7 cut(s)	30, 32, 145, 147, 329, 359, 446
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	5 cut(s)	43, 165, 434, 468, 518
HpaII	CCGG	4 cut(s)	153, 205, 231, 257
HphI	GGTGA	2 cut(s)	60, 66
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	6 cut(s)	212, 316, 366, 523, 562, 583
Hpy188III	TCNNGA	6 cut(s)	40, 257, 393, 431, 472, 485
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	6 cut(s)	61, 103, 165, 199, 202, 271
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	3 cut(s)	89, 197, 297
HpyCH4V	TGCA	3 cut(s)	276, 514, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	6 cut(s)	122, 209, 363, 432, 506, 582
HpySE526I	ACGT	3 cut(s)	89, 197, 297
Hsp92I	GRCGYC	2 cut(s)	197, 359
Hsp92II	CATG	2 cut(s)	457, 554
HspAI	GCGC	7 cut(s)	30, 32, 145, 147, 329, 359, 446
KasI	GGCGCC	1 cut(s)	358
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	421, 523
LmnI	GCTCC	1 cut(s)	294
Lsp1109I	GCAGC	2 cut(s)	14, 369
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	3 cut(s)	89, 197, 297
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	423, 525
MboI	GATC	2 cut(s)	421, 523
MboII	GAAGA	2 cut(s)	429, 575
MhlI	GDGCHC	3 cut(s)	160, 291, 353
MluCI	AATT	1 cut(s)	534
Mly113I	GGCGCC	1 cut(s)	359
MlyI	GAGTC	2 cut(s)	174, 443
MnlI	CCTC	9 cut(s)	131, 143, 146, 160, 179, 193, 229, 360, 372
MroI	TCCGGA	1 cut(s)	256
MspI	CCGG	4 cut(s)	153, 205, 231, 257
MspR9I	CCNGG	3 cut(s)	154, 231, 478
MvaI	CCWGG	1 cut(s)	478
MvnI	CGCG	5 cut(s)	32, 145, 147, 329, 448
MwoI	GCNNNNNNNGC	1 cut(s)	155
NarI	GGCGCC	1 cut(s)	359
NciI	CCSGG	2 cut(s)	154, 231
NdeII	GATC	2 cut(s)	421, 523
NlaIII	CATG	2 cut(s)	457, 554
NlaIV	GGNNCC	3 cut(s)	119, 360, 403
NmeAIII	GCCGAG	1 cut(s)	117
NspI	RCATGY	1 cut(s)	457
PauI	GCGCGC	2 cut(s)	30, 145
PciI	ACATGT	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	3 cut(s)	86, 95, 191
PfeI	GAWTC	3 cut(s)	43, 468, 518
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	5 cut(s)	7, 29, 241, 244, 384
PleI	GAGTC	2 cut(s)	173, 442
PluTI	GGCGCC	1 cut(s)	362
PpsI	GAGTC	2 cut(s)	173, 442
Ppu21I	YACGTR	1 cut(s)	298
PscI	ACATGT	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	3 cut(s)	119, 360, 403
PspPI	GGNCC	2 cut(s)	117, 402
PsyI	GACNNNGTC	1 cut(s)	196
PteI	GCGCGC	2 cut(s)	30, 145
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	291
SalI	GTCGAC	1 cut(s)	178
SatI	GCNGC	5 cut(s)	6, 28, 240, 243, 383
Sau3AI	GATC	2 cut(s)	421, 523
Sau96I	GGNCC	2 cut(s)	117, 402
SchI	GAGTC	2 cut(s)	174, 443
ScrFI	CCNGG	3 cut(s)	154, 231, 478
SduI	GDGCHC	3 cut(s)	160, 291, 353
SetI	ASST	9 cut(s)	92, 185, 200, 291, 300, 327, 479, 560, 577
SfaNI	GCATC	1 cut(s)	62
SfoI	GGCGCC	1 cut(s)	360
SinI	GGWCC	2 cut(s)	117, 402
Sse9I	AATT	1 cut(s)	534
SsiI	CCGC	3 cut(s)	5, 240, 243
SspDI	GGCGCC	1 cut(s)	358
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	3 cut(s)	152, 229, 476
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	3 cut(s)	92, 200, 300
TaqI	TCGA	5 cut(s)	163, 179, 269, 471, 486
TaqII	GACCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	534
TauI	GCSGC	3 cut(s)	8, 242, 245
TfiI	GAWTC	3 cut(s)	43, 468, 518
TseI	GCWGC	2 cut(s)	27, 382
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	117, 402
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	1 cut(s)	459
ZraI	GACGTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.