Rh4DG334700

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004568
Physical Location & Seq
Forward (+)
55764182 .. 55766001
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG334700.1

Sequence Viewer

Length: 705 bp
ATGGAGTATATATTGGCAGAAAGTAACCCGAAGGATGGGAAGTTGTTAGCTATTGGGCATTCAATGGGTGGGATCTTGCTTTATGCAATGCTTTCACGATGTGGTTCTGAAGGAAGAACGTGCAACCTAGCAGCTGTTGTAACTCTGGCCTCATCACTTGATTACACATCTTCGAAATCAACTCTCAAATTGCTTATACCACTTGCAGACCCCGCCCAGGCTCTCAATGTCCCTGTTGTTCCTTTGGGGACATTATTGGCAGCGGCTTATCCTCTCTCATCCCGCCCTCCTTATGTCTTATCTTGGCTCAATGATCTGATTTCAGCACAGGGCATGATGCATCCAGAATTATTGAAAAAGCTGGTTTTGAATAACTTTTGCACAATACCAGCAAAACTTCTGTTGCAGCTAACAACAGCTTTTAAGGAGGGTGGATTACGTGACAGGAGTGGCACCTACTTGTTTAAGGATCATATACATAAAACCAATGTCCCTATTTTAGCTCTTGCTGGAGATAAGGATCTAATATGCCCTCCTGAAGCTGTTGAAGAAACTGTTAAGGTAATACCAGAGCACCTGGTTACATATAAAGTTTTTGGAGAATCTGGAGGTGCGCACTATGCTCATTATGATTTGGTAGGAGGCCGAATGGCAGCAGAGCAAGTCTATCCCTGTATAATTGAATTTCTTAGTCAGCACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4

Protein Analysis

234

Amino Acids

25.34

Weight (kDa)

6.23

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 615
AccB1I GGYRCC 1 cut(s) 452
AciI CCGC 3 cut(s) 213, 263, 283
AclWI GGATC 3 cut(s) 80, 477, 528
AcsI RAATTY 1 cut(s) 683
AcuI CTGAAG 2 cut(s) 129, 558
AdeI CACNNNGTG 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 35, 217
AgsI TTSAA 5 cut(s) 63, 355, 370, 548, 683
AjnI CCWGG 2 cut(s) 216, 576
AluBI AGCT 7 cut(s) 50, 134, 361, 409, 419, 503, 542
AluI AGCT 7 cut(s) 50, 134, 361, 409, 419, 503, 542
Alw21I GWGCWC 1 cut(s) 576
AlwI GGATC 3 cut(s) 80, 477, 528
AoxI GGCC 2 cut(s) 147, 643
ApeKI GCWGC 4 cut(s) 131, 260, 406, 653
ApoI RAATTY 1 cut(s) 683
AspLEI GCGC 1 cut(s) 616
AsuII TTCGAA 1 cut(s) 173
BanI GGYRCC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 4 cut(s) 143, 272, 418, 665
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 218, 578
BfaI CTAG 1 cut(s) 128
BisI GCNGC 5 cut(s) 132, 261, 264, 407, 654
BlsI GCNGC 5 cut(s) 133, 262, 265, 408, 655
Bme1390I CCNGG 2 cut(s) 218, 578
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 2 cut(s) 218, 578
BmsI GCATC 2 cut(s) 327, 349
BpmI CTGGAG 2 cut(s) 531, 627
Bpu14I TTCGAA 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 440
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 217
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 2 cut(s) 218, 578
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 3 cut(s) 40, 278, 340
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 2 cut(s) 35, 217
BseMI GCAATG 1 cut(s) 93
BseXI GCAGC 4 cut(s) 143, 272, 418, 665
BshFI GGCC 2 cut(s) 149, 645
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 576
BslFI GGGAC 3 cut(s) 215, 262, 476
BslI CCNNNNNNNGG 2 cut(s) 35, 217
BsmFI GGGAC 3 cut(s) 215, 262, 476
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 2 cut(s) 149, 645
Bsp119I TTCGAA 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 4 cut(s) 72, 313, 469, 520
BspACI CCGC 3 cut(s) 213, 263, 283
BspANI GGCC 2 cut(s) 149, 645
BspLI GGNNCC 1 cut(s) 454
BspPI GGATC 3 cut(s) 80, 477, 528
BspT104I TTCGAA 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 4 cut(s) 72, 313, 469, 520
Bst2UI CCWGG 2 cut(s) 218, 578
Bst4CI ACNGT 1 cut(s) 556
BstBAI YACGTR 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 689
BstF5I GGATG 3 cut(s) 40, 278, 340
BstHHI GCGC 1 cut(s) 616
BstKTI GATC 4 cut(s) 75, 316, 472, 523
BstMBI GATC 4 cut(s) 72, 313, 469, 520
BstMWI GCNNNNNNNGC 2 cut(s) 212, 620
BstNI CCWGG 2 cut(s) 218, 578
BstSCI CCNGG 2 cut(s) 216, 576
BstV1I GCAGC 4 cut(s) 143, 272, 418, 665
BstX2I RGATCY 2 cut(s) 72, 520
BstYI RGATCY 2 cut(s) 72, 520
BsuRI GGCC 2 cut(s) 149, 645
BtsCI GGATG 3 cut(s) 40, 278, 340
CfoI GCGC 1 cut(s) 616
CsiI ACCWGGT 1 cut(s) 576
CviAII CATG 1 cut(s) 334
DdeI CTNAG 1 cut(s) 689
DpnI GATC 4 cut(s) 74, 315, 471, 522
DpnII GATC 4 cut(s) 72, 313, 469, 520
DraIII CACNNNGTG 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 129, 558
EcoRII CCWGG 2 cut(s) 216, 576
EcoT22I ATGCAT 1 cut(s) 342
FaeI CATG 1 cut(s) 337
FaqI GGGAC 3 cut(s) 215, 262, 476
FatI CATG 1 cut(s) 333
FauI CCCGC 2 cut(s) 220, 290
Fnu4HI GCNGC 5 cut(s) 132, 261, 264, 407, 654
FokI GGATG 3 cut(s) 47, 265, 327
Fsp4HI GCNGC 5 cut(s) 132, 261, 264, 407, 654
FspAI RTGCGCAY 1 cut(s) 615
FspBI CTAG 1 cut(s) 128
FspI TGCGCA 1 cut(s) 615
GlaI GCGC 1 cut(s) 615
GluI GCNGC 5 cut(s) 132, 261, 264, 407, 654
GsuI CTGGAG 2 cut(s) 531, 627
HaeIII GGCC 2 cut(s) 149, 645
HhaI GCGC 1 cut(s) 616
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 614
HinP1I GCGC 1 cut(s) 614
HinfI GANTC 1 cut(s) 602
Hpy188I TCNGA 2 cut(s) 109, 318
Hpy188III TCNNGA 4 cut(s) 96, 344, 536, 606
HpyAV CCTTC 2 cut(s) 25, 104
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 2 cut(s) 119, 439
HpyCH4V TGCA 6 cut(s) 86, 123, 206, 340, 381, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 620
HpyF3I CTNAG 1 cut(s) 689
HpySE526I ACGT 2 cut(s) 119, 439
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 614
Kzo9I GATC 4 cut(s) 72, 313, 469, 520
Lsp1109I GCAGC 4 cut(s) 143, 272, 418, 665
LweI GCATC 2 cut(s) 327, 349
MabI ACCWGGT 1 cut(s) 576
MaeI CTAG 1 cut(s) 128
MaeII ACGT 2 cut(s) 119, 439
MaeIII GTNAC 4 cut(s) 23, 139, 440, 580
MalI GATC 4 cut(s) 74, 315, 471, 522
MboI GATC 4 cut(s) 72, 313, 469, 520
MboII GAAGA 3 cut(s) 126, 162, 560
MflI RGATCY 2 cut(s) 72, 520
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 4 cut(s) 188, 347, 678, 683
MnlI CCTC 7 cut(s) 160, 282, 297, 421, 543, 602, 635
Mph1103I ATGCAT 1 cut(s) 342
MseI TTAA 3 cut(s) 423, 465, 558
MspA1I CMGCKG 2 cut(s) 134, 263
MspR9I CCNGG 2 cut(s) 218, 578
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 2 cut(s) 218, 578
MwoI GCNNNNNNNGC 2 cut(s) 212, 620
NdeII GATC 4 cut(s) 72, 313, 469, 520
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 440
NsbI TGCGCA 1 cut(s) 615
NsiI ATGCAT 1 cut(s) 342
NspV TTCGAA 1 cut(s) 173
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 602
PkrI GCNGC 5 cut(s) 133, 262, 265, 408, 655
Ppu21I YACGTR 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 216, 576
PspGI CCWGG 2 cut(s) 216, 576
PspN4I GGNNCC 1 cut(s) 454
PsuI RGATCY 2 cut(s) 72, 520
PvuII CAGCTG 1 cut(s) 134
SaqAI TTAA 3 cut(s) 423, 465, 558
SatI GCNGC 5 cut(s) 132, 261, 264, 407, 654
Sau3AI GATC 4 cut(s) 72, 313, 469, 520
ScrFI CCNGG 2 cut(s) 218, 578
SduI GDGCHC 1 cut(s) 576
SexAI ACCWGGT 1 cut(s) 576
SfaNI GCATC 2 cut(s) 327, 349
SfuI TTCGAA 1 cut(s) 173
Sse9I AATT 4 cut(s) 188, 347, 678, 683
SsiI CCGC 3 cut(s) 213, 263, 283
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 2 cut(s) 216, 576
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 2 cut(s) 122, 442
TaqI TCGA 1 cut(s) 173
TasI AATT 4 cut(s) 188, 347, 678, 683
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 1 cut(s) 602
Tru1I TTAA 3 cut(s) 423, 465, 558
Tru9I TTAA 3 cut(s) 423, 465, 558
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 4 cut(s) 131, 260, 406, 653
Tsp45I GTSAC 1 cut(s) 440
XapI RAATTY 1 cut(s) 683
XspI CTAG 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.