FvH4_4g27020

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014004
Physical Location & Seq
Forward (+)
28188148 .. 28189391
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27020.t1

Sequence Viewer

Length: 738 bp
ATGGCAGAGGCTGCAGAAAGAGAGCTACAATATCAAACCAGACCAATCAACACCTCATCTAATACTAGCAGTGCTGCTGCTAGTCCAACCACCACGCGCTTAAAGCTCTTTGGCTTCAATGTCAACCAGCCCTTAGAAGACGTCGAAGAAGCCGCTGTTCTTGAGTCTGCAAAGACCACTCCTTCCGGATCGCCGGAATCCGGCGGGTTTTCCACCACCGGCGACCGGAAGTACGAGTGCCAGTACTGCTGCCGAGAATTCGCCAACTCGCAAGCCCTCGGCGGCCACCAAAACGCTCACAAGAAGGAGAGGCAGCAGCTCAAGCGGGCCCAGCTCCAGGCCAGCCGAAACGCCGCCGTTTCGTACGCGCGCAACCCCATAATCTCCGCCTTCGCTCCGCCGCACCACCTCCTGGCGCCGCCGGGGTCGGTGATGGTCCCGGCGGCGTCTCCGGCGTCCCCGTCGTGGGTGTACGTGCCTCGCTCGGCGACGCCGTTTCAGGTCTCTCACGGGTGCGTGTTCCCGGCGGCGGCGGGGAATGGGAGGAGCGGAGGGAGTTATGCGTACGGCGGAGGTGGCGGAGCGGAGTCTGCATTGACGATGATGGGGCAGCAAGTGCAGCAGGGCCACCGGGCCCATGGAAGAGCAGATGGGCCTTCTTTGAGTAGGTTCACTAAGGGGGATGGTGGGCCAGGTTTCGACGATGGGCTGGGCTTGGACTTGCAACTTAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

246

Amino Acids

25.64

Weight (kDa)

8.36

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 415
AccB7I CCANNNNNTGG 1 cut(s) 412
AccBSI CCGCTC 2 cut(s) 549, 584
AccII CGCG 3 cut(s) 97, 368, 370
AccIII TCCGGA 1 cut(s) 185
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 5 cut(s) 141, 416, 446, 455, 491
AfaI GTAC 5 cut(s) 233, 245, 365, 473, 566
AfiI CCNNNNNNNGG 7 cut(s) 200, 225, 337, 412, 465, 466, 529
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 3 cut(s) 336, 411, 691
AluBI AGCT 4 cut(s) 25, 106, 319, 334
AluI AGCT 4 cut(s) 25, 106, 319, 334
Alw26I GTCTC 2 cut(s) 453, 508
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 185
AoxI GGCC 7 cut(s) 283, 327, 339, 625, 633, 653, 689
ApaI GGGCCC 2 cut(s) 331, 637
ApeKI GCWGC 8 cut(s) 11, 74, 77, 249, 313, 316, 610, 619
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 4 cut(s) 99, 370, 372, 418
AspS9I GGNCC 8 cut(s) 327, 328, 436, 625, 633, 634, 653, 689
AsuC2I CCSGG 4 cut(s) 423, 440, 524, 632
AsuHPI GGTGA 1 cut(s) 442
AvaII GGWCC 1 cut(s) 436
BaeGI GKGCMC 2 cut(s) 331, 637
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 2 cut(s) 331, 637
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 7 cut(s) 61, 64, 236, 325, 328, 622, 631
BccI CCATC 5 cut(s) 427, 598, 644, 677, 698
BceAI ACGGC 3 cut(s) 341, 478, 583
BciT130I CCWGG 3 cut(s) 338, 413, 693
BcnI CCSGG 4 cut(s) 423, 440, 524, 632
BcoDI GTCTC 2 cut(s) 453, 508
BfaI CTAG 2 cut(s) 66, 81
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 419
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 7 cut(s) 338, 413, 423, 440, 524, 632, 693
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 8 cut(s) 327, 328, 436, 625, 633, 634, 653, 689
BmiI GGNNCC 4 cut(s) 329, 417, 438, 635
BmrFI CCNGG 7 cut(s) 338, 413, 423, 440, 524, 632, 693
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 2 cut(s) 182, 305
BpuMI CCSGG 4 cut(s) 423, 440, 524, 632
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 5 cut(s) 141, 416, 446, 455, 491
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 3 cut(s) 277, 422, 637
BsaWI WCCGGW 2 cut(s) 185, 225
Bsc4I CCNNNNNNNGG 7 cut(s) 200, 225, 337, 412, 465, 466, 529
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 241
BseAI TCCGGA 1 cut(s) 185
BseBI CCWGG 3 cut(s) 338, 413, 693
BseDI CCNNGG 3 cut(s) 277, 422, 637
BseGI GGATG 1 cut(s) 688
BseLI CCNNNNNNNGG 7 cut(s) 200, 225, 337, 412, 465, 466, 529
BseNI ACTGG 1 cut(s) 241
BsePI GCGCGC 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 559
BseSI GKGCMC 2 cut(s) 331, 637
BseXI GCAGC 7 cut(s) 61, 64, 236, 325, 328, 622, 631
BseYI CCCAGC 2 cut(s) 330, 709
BsgI GTGCAG 1 cut(s) 638
Bsh1236I CGCG 3 cut(s) 97, 368, 370
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 7 cut(s) 285, 329, 341, 627, 635, 655, 691
BshNI GGYRCC 1 cut(s) 415
BsiEI CGRYCG 1 cut(s) 226
BsiWI CGTACG 2 cut(s) 363, 564
BslFI GGGAC 2 cut(s) 422, 442
BslI CCNNNNNNNGG 7 cut(s) 200, 225, 337, 412, 465, 466, 529
BsmAI GTCTC 2 cut(s) 453, 508
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 2 cut(s) 422, 442
BsnI GGCC 7 cut(s) 285, 329, 341, 627, 635, 655, 691
Bso31I GGTCTC 1 cut(s) 508
Bsp120I GGGCCC 2 cut(s) 327, 633
Bsp1286I GDGCHC 2 cut(s) 331, 637
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 1 cut(s) 188
Bsp19I CCATGG 1 cut(s) 637
BspANI GGCC 7 cut(s) 285, 329, 341, 627, 635, 655, 691
BspEI TCCGGA 1 cut(s) 185
BspFNI CGCG 3 cut(s) 97, 368, 370
BspLI GGNNCC 4 cut(s) 329, 417, 438, 635
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 637
BspT107I GGYRCC 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 508
BsrBI CCGCTC 2 cut(s) 549, 584
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 277, 422, 637
BssHII GCGCGC 1 cut(s) 368
BssMI GATC 1 cut(s) 188
BssNI GRCGYC 5 cut(s) 141, 416, 446, 455, 491
BssT1I CCWWGG 1 cut(s) 637
Bst2UI CCWGG 3 cut(s) 338, 413, 693
Bst6I CTCTTC 1 cut(s) 637
BstACI GRCGYC 5 cut(s) 141, 416, 446, 455, 491
BstAPI GCANNNNNTGC 2 cut(s) 11, 616
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 4 cut(s) 273, 327, 343, 370
BstDEI CTNAG 3 cut(s) 133, 675, 728
BstDSI CCRYGG 1 cut(s) 637
BstF5I GGATG 1 cut(s) 688
BstFNI CGCG 3 cut(s) 97, 368, 370
BstH2I RGCGCY 1 cut(s) 419
BstHHI GCGC 4 cut(s) 99, 370, 372, 418
BstKTI GATC 1 cut(s) 191
BstMAI GTCTC 2 cut(s) 453, 508
BstMBI GATC 1 cut(s) 188
BstMCI CGRYCG 1 cut(s) 226
BstNI CCWGG 3 cut(s) 338, 413, 693
BstSCI CCNGG 7 cut(s) 336, 411, 421, 438, 522, 630, 691
BstSFI CTRYAG 1 cut(s) 12
BstSLI GKGCMC 2 cut(s) 331, 637
BstUI CGCG 3 cut(s) 97, 368, 370
BstV1I GCAGC 7 cut(s) 61, 64, 236, 325, 328, 622, 631
BstV2I GAAGAC 1 cut(s) 144
BsuRI GGCC 7 cut(s) 285, 329, 341, 627, 635, 655, 691
BtgI CCRYGG 1 cut(s) 637
BtsCI GGATG 1 cut(s) 688
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 4 cut(s) 273, 327, 343, 370
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 4 cut(s) 99, 370, 372, 418
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 8 cut(s) 327, 328, 436, 625, 633, 634, 653, 689
CseI GACGC 3 cut(s) 435, 444, 499
Csp6I GTAC 5 cut(s) 232, 244, 364, 472, 565
CviAII CATG 1 cut(s) 638
CviQI GTAC 5 cut(s) 232, 244, 364, 472, 565
DdeI CTNAG 3 cut(s) 133, 675, 728
DinI GGCGCC 1 cut(s) 417
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
EciI GGCGGA 4 cut(s) 376, 387, 585, 594
Eco130I CCWWGG 1 cut(s) 637
Eco24I GRGCYC 2 cut(s) 331, 637
Eco31I GGTCTC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 436
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 336, 411, 691
EcoT14I CCWWGG 1 cut(s) 637
EcoT38I GRGCYC 2 cut(s) 331, 637
EgeI GGCGCC 1 cut(s) 417
EheI GGCGCC 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 637
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 1 cut(s) 641
FaiI YATR 3 cut(s) 380, 561, 639
FaqI GGGAC 2 cut(s) 422, 442
FatI CATG 1 cut(s) 637
FauI CCCGC 3 cut(s) 197, 318, 526
FokI GGATG 1 cut(s) 695
FriOI GRGCYC 2 cut(s) 331, 637
FspBI CTAG 2 cut(s) 66, 81
GlaI GCGC 4 cut(s) 98, 369, 371, 417
GsaI CCCAGC 2 cut(s) 334, 713
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 419
HaeIII GGCC 7 cut(s) 285, 329, 341, 627, 635, 655, 691
HgaI GACGC 3 cut(s) 435, 444, 499
HhaI GCGC 4 cut(s) 99, 370, 372, 418
Hin1I GRCGYC 5 cut(s) 141, 416, 446, 455, 491
Hin1II CATG 1 cut(s) 641
Hin6I GCGC 4 cut(s) 97, 368, 370, 416
HinP1I GCGC 4 cut(s) 97, 368, 370, 416
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 164, 197, 587
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 3 cut(s) 124, 472, 672
Hpy188III TCNNGA 2 cut(s) 161, 186
Hpy8I GTNNAC 3 cut(s) 124, 472, 672
Hpy99I CGWCG 4 cut(s) 146, 466, 493, 704
HpyAV CCTTC 4 cut(s) 192, 298, 400, 666
HpyCH4IV ACGT 2 cut(s) 141, 474
HpyCH4V TGCA 5 cut(s) 14, 170, 593, 619, 724
HpyF3I CTNAG 3 cut(s) 133, 675, 728
HpySE526I ACGT 2 cut(s) 141, 474
Hsp92I GRCGYC 5 cut(s) 141, 416, 446, 455, 491
Hsp92II CATG 1 cut(s) 641
HspAI GCGC 4 cut(s) 97, 368, 370, 416
KasI GGCGCC 1 cut(s) 415
Kpn2I TCCGGA 1 cut(s) 185
Kzo9I GATC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 637
LmnI GCTCC 4 cut(s) 339, 400, 546, 581
Lsp1109I GCAGC 7 cut(s) 61, 64, 236, 325, 328, 622, 631
MaeI CTAG 2 cut(s) 66, 81
MaeII ACGT 2 cut(s) 141, 474
MalI GATC 1 cut(s) 190
MbiI CCGCTC 2 cut(s) 549, 584
MboI GATC 1 cut(s) 188
MboII GAAGA 3 cut(s) 149, 158, 654
MhlI GDGCHC 2 cut(s) 331, 637
MluCI AATT 1 cut(s) 257
Mly113I GGCGCC 1 cut(s) 416
MlyI GAGTC 2 cut(s) 173, 596
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 8 cut(s) 64, 287, 303, 419, 489, 537, 545, 566
MroI TCCGGA 1 cut(s) 185
MseI TTAA 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 155
MspR9I CCNGG 7 cut(s) 338, 413, 423, 440, 524, 632, 693
MvaI CCWGG 3 cut(s) 338, 413, 693
MvnI CGCG 3 cut(s) 97, 368, 370
NarI GGCGCC 1 cut(s) 416
NciI CCSGG 4 cut(s) 423, 440, 524, 632
NcoI CCATGG 1 cut(s) 637
NdeII GATC 1 cut(s) 188
NlaIII CATG 1 cut(s) 641
NlaIV GGNNCC 4 cut(s) 329, 417, 438, 635
NmeAIII GCCGAG 3 cut(s) 258, 278, 464
PauI GCGCGC 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PfeI GAWTC 1 cut(s) 197
Pfl23II CGTACG 2 cut(s) 363, 564
PflMI CCANNNNNTGG 1 cut(s) 412
PleI GAGTC 2 cut(s) 172, 595
PluTI GGCGCC 1 cut(s) 419
PpsI GAGTC 2 cut(s) 172, 595
Ppu21I YACGTR 1 cut(s) 475
Psp6I CCWGG 3 cut(s) 336, 411, 691
PspFI CCCAGC 2 cut(s) 330, 709
PspGI CCWGG 3 cut(s) 336, 411, 691
PspLI CGTACG 2 cut(s) 363, 564
PspN4I GGNNCC 4 cut(s) 329, 417, 438, 635
PspOMI GGGCCC 2 cut(s) 327, 633
PspPI GGNCC 8 cut(s) 327, 328, 436, 625, 633, 634, 653, 689
PstI CTGCAG 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 11
PteI GCGCGC 1 cut(s) 368
RsaI GTAC 5 cut(s) 233, 245, 365, 473, 566
RsaNI GTAC 5 cut(s) 232, 244, 364, 472, 565
SapI GCTCTTC 1 cut(s) 637
SaqAI TTAA 1 cut(s) 101
Sau3AI GATC 1 cut(s) 188
Sau96I GGNCC 8 cut(s) 327, 328, 436, 625, 633, 634, 653, 689
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 2 cut(s) 173, 596
ScrFI CCNGG 7 cut(s) 338, 413, 423, 440, 524, 632, 693
SduI GDGCHC 2 cut(s) 331, 637
SfcI CTRYAG 1 cut(s) 12
SfoI GGCGCC 1 cut(s) 417
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 1 cut(s) 436
SmlI CTYRAG 2 cut(s) 161, 320
SmoI CTYRAG 2 cut(s) 161, 320
Sse9I AATT 1 cut(s) 257
SspDI GGCGCC 1 cut(s) 415
SspMI CTAG 2 cut(s) 66, 81
StyD4I CCNGG 7 cut(s) 336, 411, 421, 438, 522, 630, 691
StyI CCWWGG 1 cut(s) 637
TaiI ACGT 2 cut(s) 144, 477
TaqI TCGA 2 cut(s) 144, 699
TasI AATT 1 cut(s) 257
TatI WGTACW 1 cut(s) 243
TauI GCSGC 8 cut(s) 155, 285, 356, 403, 421, 446, 530, 533
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 1 cut(s) 76
TseI GCWGC 8 cut(s) 11, 74, 77, 249, 313, 316, 610, 619
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XspI CTAG 2 cut(s) 66, 81
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.