Rh4AG335200

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014004
Physical Location & Seq
Forward (+)
64455683 .. 64455979
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG335200.1

Sequence Viewer

Length: 297 bp
ATGGTTCCGTCCACGTCTCCGGCGTCCCCGTCGTGGGTTTACGTGCCTCGCGCCGCGACGCCGTTCCAGGTGTCGCACGGCTGCGTGTTTCCAGCGGCGTCGGGTAATGGGAGGGGCGGAGGGAGCTTTGCCTACGGCGGAGGGGAGTCGGCATTGACGATGATGGGGCCGCAAGTGCAGCAGGGCCACCGGGCCCATGGAAGAGCTGACGGGCCATCGTTGAGTAGGTTCACTAAGGGGGATGGTGGGCCCTGTTTGGACGATGGGCTGGGCTTGGACTTGCAACTCAGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

98

Amino Acids

9.9

Weight (kDa)

6.8

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 51, 56
AciI CCGC 5 cut(s) 54, 95, 117, 138, 170
AcyI GRCGYC 3 cut(s) 23, 59, 98
AfiI CCNNNNNNNGG 2 cut(s) 33, 34
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 2 cut(s) 126, 206
AluI AGCT 2 cut(s) 126, 206
Alw26I GTCTC 1 cut(s) 21
AlwNI CAGNNNCTG 1 cut(s) 294
AoxI GGCC 5 cut(s) 167, 184, 192, 212, 248
ApaI GGGCCC 2 cut(s) 196, 252
ApeKI GCWGC 2 cut(s) 81, 178
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 7 cut(s) 167, 184, 192, 193, 212, 248, 249
AsuC2I CCSGG 1 cut(s) 191
BaeGI GKGCMC 2 cut(s) 196, 252
BanII GRGCYC 2 cut(s) 196, 252
BbvI GCAGC 2 cut(s) 68, 190
BccI CCATC 4 cut(s) 157, 223, 236, 257
BceAI ACGGC 3 cut(s) 46, 94, 151
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 21
BisI GCNGC 5 cut(s) 54, 82, 96, 170, 179
BlsI GCNGC 5 cut(s) 55, 83, 97, 171, 180
Bme1390I CCNGG 2 cut(s) 68, 191
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 7 cut(s) 167, 184, 192, 193, 212, 248, 249
BmiI GGNNCC 4 cut(s) 6, 168, 194, 250
BmrFI CCNGG 2 cut(s) 68, 191
BpuMI CCSGG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 43
BsaHI GRCGYC 3 cut(s) 23, 59, 98
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 34
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 33, 34
BseSI GKGCMC 2 cut(s) 196, 252
BseXI GCAGC 2 cut(s) 68, 190
BseYI CCCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 197
Bsh1236I CGCG 2 cut(s) 51, 56
BshFI GGCC 5 cut(s) 169, 186, 194, 214, 250
BsiSI CCGG 2 cut(s) 20, 190
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 33, 34
BsmAI GTCTC 1 cut(s) 21
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 5 cut(s) 169, 186, 194, 214, 250
Bsp120I GGGCCC 2 cut(s) 192, 248
Bsp1286I GDGCHC 2 cut(s) 196, 252
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 5 cut(s) 54, 95, 117, 138, 170
BspANI GGCC 5 cut(s) 169, 186, 194, 214, 250
BspFNI CGCG 2 cut(s) 51, 56
BspLI GGNNCC 4 cut(s) 6, 168, 194, 250
BspQI GCTCTTC 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 196
BssNI GRCGYC 3 cut(s) 23, 59, 98
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 196
BstACI GRCGYC 3 cut(s) 23, 59, 98
BstBAI YACGTR 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 234, 287
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 2 cut(s) 51, 56
BstHHI GCGC 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 123, 175, 178
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 66, 189
BstSLI GKGCMC 2 cut(s) 196, 252
BstUI CGCG 2 cut(s) 51, 56
BstV1I GCAGC 2 cut(s) 68, 190
BsuRI GGCC 5 cut(s) 169, 186, 194, 214, 250
BtgI CCRYGG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 247
CaiI CAGNNNCTG 1 cut(s) 294
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 7 cut(s) 167, 184, 192, 193, 212, 248, 249
CseI GACGC 3 cut(s) 12, 67, 87
CviAII CATG 1 cut(s) 197
DdeI CTNAG 2 cut(s) 234, 287
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
EciI GGCGGA 2 cut(s) 132, 153
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 2 cut(s) 196, 252
EcoO109I RGGNCCY 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 2 cut(s) 196, 252
ErhI CCWWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 1 cut(s) 200
FaiI YATR 1 cut(s) 198
FaqI GGGAC 1 cut(s) 10
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 5 cut(s) 54, 82, 96, 170, 179
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 2 cut(s) 196, 252
Fsp4HI GCNGC 5 cut(s) 54, 82, 96, 170, 179
GlaI GCGC 1 cut(s) 52
GluI GCNGC 5 cut(s) 54, 82, 96, 170, 179
GsaI CCCAGC 1 cut(s) 272
HaeIII GGCC 5 cut(s) 169, 186, 194, 214, 250
HapII CCGG 2 cut(s) 20, 190
HgaI GACGC 3 cut(s) 12, 67, 87
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 3 cut(s) 23, 59, 98
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 146
HpaII CCGG 2 cut(s) 20, 190
Hpy166II GTNNAC 3 cut(s) 12, 40, 231
Hpy188I TCNGA 1 cut(s) 296
Hpy8I GTNNAC 3 cut(s) 12, 40, 231
Hpy99I CGWCG 3 cut(s) 34, 61, 103
HpyCH4IV ACGT 2 cut(s) 14, 42
HpyCH4V TGCA 2 cut(s) 178, 283
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 175, 178
HpyF3I CTNAG 2 cut(s) 234, 287
HpySE526I ACGT 2 cut(s) 14, 42
Hsp92I GRCGYC 3 cut(s) 23, 59, 98
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 1 cut(s) 51
LguI GCTCTTC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 8 cut(s) 33, 53, 80, 105, 167, 203, 254, 265
Lsp1109I GCAGC 2 cut(s) 68, 190
MaeII ACGT 2 cut(s) 14, 42
MboII GAAGA 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 196, 252
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 4 cut(s) 57, 105, 113, 134
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 2 cut(s) 20, 190
MspR9I CCNGG 2 cut(s) 68, 191
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 51, 56
MwoI GCNNNNNNNGC 3 cut(s) 123, 175, 178
NciI CCSGG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 196
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 4 cut(s) 6, 168, 194, 250
PciSI GCTCTTC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 155
PkrI GCNGC 5 cut(s) 55, 83, 97, 171, 180
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Ppu21I YACGTR 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 268
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 4 cut(s) 6, 168, 194, 250
PspOMI GGGCCC 2 cut(s) 192, 248
PspPI GGNCC 7 cut(s) 167, 184, 192, 193, 212, 248, 249
PstNI CAGNNNCTG 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 196
SatI GCNGC 5 cut(s) 54, 82, 96, 170, 179
Sau96I GGNCC 7 cut(s) 167, 184, 192, 193, 212, 248, 249
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 68, 191
SduI GDGCHC 2 cut(s) 196, 252
SetI ASST 6 cut(s) 17, 45, 72, 128, 208, 230
SsiI CCGC 5 cut(s) 54, 95, 117, 138, 170
StyD4I CCNGG 2 cut(s) 66, 189
StyI CCWWGG 1 cut(s) 196
TaiI ACGT 2 cut(s) 17, 45
TauI GCSGC 3 cut(s) 56, 98, 172
TseI GCWGC 2 cut(s) 81, 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.