MD16G1040100.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014004
Physical Location & Seq
Forward (+)
2848283 .. 2848987
705 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1040100.v1.1.491

Sequence Viewer

Length: 705 bp
ATGGCCGAGGCTGCGGAGCTTCACTATGAACCCAAACCGACCAACAACACAACTACACGCTTAAAACTCTTCGGTTTCAATGTCCAAGAAGACGACGTAGAATCATCAGCCGTACTCGACTCCACCAAGACCGCCACGACCCCTTCCGACTCACCTGAATCCGCCCCCTTCTCCACCTCCGGCGACCGTAAATATGAGTGCCAGTACTGCTGCCGTGAATTCGCCAACTCCCAAGCCCTCGGTGGCCACCAGAACGCCCACAAGAAAGAGCGCCAGCAGCTCAAGCGAGCTCAGCTCCAAGCCAGCAGAAACGCCACCGTCTCCTACGCCCGAAACCCCATCATCTCCGCCTTCACTCCGCCTCCTCACCTCCTCTCTCCGGCCGGATCCGTGATGGTTCCGGCGGCGTCTCCGGCAAGCCCGTCGTGGGTTTACGTCCAGCGCGCGGCCACCCCGTTCCATGTATCGCACGGGTGCATGTTTCCCGCGGCGACCCATCACGGGAGGGCTGCAGGGAGTTATTCCTACGGTGGCGGTGTAGGGGATTCCGCATTGACGTCAATGGGGCCGGCTCATCATCAGGTACTACAACAGAGCCGGGCCCACGGGAGAGTGGATGGGCCGTCATTGAGTAGGTTCACGAAAGGGGATGTTGGGCCCAGTTTCGACGATGCATTGGGCTTGGACTTGCATCTCAGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

235

Amino Acids

24.99

Weight (kDa)

7.2

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 560
AccII CGCG 3 cut(s) 444, 446, 488
AclWI GGATC 2 cut(s) 381, 394
AcoI YGGCCR 4 cut(s) 3, 244, 381, 447
AcsI RAATTY 1 cut(s) 218
AcyI GRCGYC 2 cut(s) 407, 557
AfaI GTAC 3 cut(s) 114, 206, 585
AfiI CCNNNNNNNGG 4 cut(s) 379, 427, 445, 501
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 4 cut(s) 19, 280, 290, 295
AluI AGCT 4 cut(s) 19, 280, 290, 295
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 2 cut(s) 325, 414
AlwI GGATC 2 cut(s) 381, 394
AoxI GGCC 8 cut(s) 3, 244, 381, 447, 566, 600, 620, 656
ApaI GGGCCC 2 cut(s) 604, 660
ApeKI GCWGC 4 cut(s) 11, 210, 277, 509
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 3 cut(s) 273, 444, 446
AspS9I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 2 cut(s) 144, 359
BaeGI GKGCMC 2 cut(s) 604, 660
BalI TGGCCA 1 cut(s) 246
BamHI GGATCC 1 cut(s) 386
BanII GRGCYC 3 cut(s) 292, 604, 660
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 3 cut(s) 197, 289, 496
BccI CCATC 4 cut(s) 347, 388, 504, 611
BceAI ACGGC 3 cut(s) 95, 198, 607
BcgI CGANNNNNNTGC 2 cut(s) 405, 439
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 2 cut(s) 325, 414
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 274
BisI GCNGC 7 cut(s) 12, 211, 278, 405, 447, 489, 510
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 7 cut(s) 13, 212, 279, 406, 448, 490, 511
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 599
BmgT120I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
BmiI GGNNCC 5 cut(s) 388, 399, 567, 602, 658
BmrFI CCNGG 1 cut(s) 599
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 2 cut(s) 661, 700
BmuI ACTGGG 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 279, 311
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 599
BsaHI GRCGYC 2 cut(s) 407, 557
BsaJI CCNNGG 4 cut(s) 6, 238, 486, 604
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 4 cut(s) 379, 427, 445, 501
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 2 cut(s) 202, 660
BseDI CCNNGG 4 cut(s) 6, 238, 486, 604
BseGI GGATG 2 cut(s) 622, 655
BseLI CCNNNNNNNGG 4 cut(s) 379, 427, 445, 501
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 202, 660
BsePI GCGCGC 1 cut(s) 442
BseRI GAGGAG 2 cut(s) 354, 362
BseSI GKGCMC 2 cut(s) 604, 660
BseX3I CGGCCG 1 cut(s) 381
BseXI GCAGC 3 cut(s) 197, 289, 496
Bsh1236I CGCG 3 cut(s) 444, 446, 488
Bsh1285I CGRYCG 2 cut(s) 187, 384
BshFI GGCC 8 cut(s) 5, 246, 383, 449, 568, 602, 622, 658
BsiEI CGRYCG 2 cut(s) 187, 384
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 7 cut(s) 180, 380, 384, 401, 413, 569, 598
BslI CCNNNNNNNGG 4 cut(s) 379, 427, 445, 501
BsmAI GTCTC 2 cut(s) 325, 414
BsmBI CGTCTC 2 cut(s) 325, 414
BsnI GGCC 8 cut(s) 5, 246, 383, 449, 568, 602, 622, 658
Bsp120I GGGCCC 2 cut(s) 600, 656
Bsp1286I GDGCHC 3 cut(s) 292, 604, 660
Bsp143I GATC 1 cut(s) 386
Bsp1720I GCTNAGC 1 cut(s) 291
BspANI GGCC 8 cut(s) 5, 246, 383, 449, 568, 602, 622, 658
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 3 cut(s) 444, 446, 488
BspLI GGNNCC 5 cut(s) 388, 399, 567, 602, 658
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 2 cut(s) 381, 394
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 2 cut(s) 202, 660
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 4 cut(s) 6, 238, 486, 604
BssHII GCGCGC 1 cut(s) 442
BssMI GATC 1 cut(s) 386
BssNI GRCGYC 2 cut(s) 407, 557
Bst4CI ACNGT 3 cut(s) 188, 319, 530
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 2 cut(s) 407, 557
BstC8I GCNNGC 6 cut(s) 275, 288, 304, 418, 444, 570
BstDEI CTNAG 2 cut(s) 291, 695
BstDSI CCRYGG 2 cut(s) 486, 604
BstF5I GGATG 2 cut(s) 622, 655
BstFNI CGCG 3 cut(s) 444, 446, 488
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 3 cut(s) 273, 444, 446
BstKTI GATC 1 cut(s) 389
BstMAI GTCTC 2 cut(s) 325, 414
BstMBI GATC 1 cut(s) 386
BstMCI CGRYCG 2 cut(s) 187, 384
BstMWI GCNNNNNNNGC 6 cut(s) 11, 207, 277, 283, 292, 413
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 597
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 2 cut(s) 604, 660
BstUI CGCG 3 cut(s) 444, 446, 488
BstV1I GCAGC 3 cut(s) 197, 289, 496
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BstZI CGGCCG 1 cut(s) 381
BsuRI GGCC 8 cut(s) 5, 246, 383, 449, 568, 602, 622, 658
BtgI CCRYGG 2 cut(s) 486, 604
BtsCI GGATG 2 cut(s) 622, 655
Cac8I GCNNGC 6 cut(s) 275, 288, 304, 418, 444, 570
CfoI GCGC 3 cut(s) 273, 444, 446
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
Cfr42I CCGCGG 1 cut(s) 489
CseI GACGC 1 cut(s) 396
Csp6I GTAC 3 cut(s) 113, 205, 584
CviAII CATG 2 cut(s) 461, 478
CviQI GTAC 3 cut(s) 113, 205, 584
DdeI CTNAG 2 cut(s) 291, 695
DpnI GATC 1 cut(s) 388
DpnII GATC 1 cut(s) 386
EaeI YGGCCR 4 cut(s) 3, 244, 381, 447
EagI CGGCCG 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 3 cut(s) 151, 337, 348
Ecl136II GAGCTC 1 cut(s) 290
EclXI CGGCCG 1 cut(s) 381
Eco24I GRGCYC 3 cut(s) 292, 604, 660
Eco52I CGGCCG 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 3 cut(s) 292, 604, 660
Esp3I CGTCTC 2 cut(s) 325, 414
FaeI CATG 2 cut(s) 464, 481
FaiI YATR 4 cut(s) 27, 195, 462, 479
FatI CATG 2 cut(s) 460, 477
FauI CCCGC 1 cut(s) 493
Fnu4HI GCNGC 7 cut(s) 12, 211, 278, 405, 447, 489, 510
FokI GGATG 2 cut(s) 629, 662
FriOI GRGCYC 3 cut(s) 292, 604, 660
Fsp4HI GCNGC 7 cut(s) 12, 211, 278, 405, 447, 489, 510
GlaI GCGC 3 cut(s) 272, 443, 445
GluI GCNGC 7 cut(s) 12, 211, 278, 405, 447, 489, 510
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 8 cut(s) 5, 246, 383, 449, 568, 602, 622, 658
HapII CCGG 7 cut(s) 180, 380, 384, 401, 413, 569, 598
HgaI GACGC 1 cut(s) 396
HhaI GCGC 3 cut(s) 273, 444, 446
Hin1I GRCGYC 2 cut(s) 407, 557
Hin1II CATG 2 cut(s) 464, 481
Hin6I GCGC 3 cut(s) 271, 442, 444
HinP1I GCGC 3 cut(s) 271, 442, 444
HinfI GANTC 5 cut(s) 101, 119, 149, 158, 545
HpaII CCGG 7 cut(s) 180, 380, 384, 401, 413, 569, 598
HphI GGTGA 2 cut(s) 144, 359
Hpy166II GTNNAC 2 cut(s) 433, 639
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 640
Hpy8I GTNNAC 2 cut(s) 433, 639
Hpy99I CGWCG 3 cut(s) 98, 427, 671
HpyAV CCTTC 3 cut(s) 153, 178, 361
HpyCH4III ACNGT 3 cut(s) 188, 319, 530
HpyCH4IV ACGT 3 cut(s) 96, 435, 557
HpyCH4V TGCA 4 cut(s) 477, 512, 674, 691
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 207, 277, 283, 292, 413
HpyF3I CTNAG 2 cut(s) 291, 695
HpySE526I ACGT 3 cut(s) 96, 435, 557
Hsp92I GRCGYC 2 cut(s) 407, 557
Hsp92II CATG 2 cut(s) 464, 481
HspAI GCGC 3 cut(s) 271, 442, 444
KroI GCCGGC 1 cut(s) 568
KroNI GCCGGC 1 cut(s) 570
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 1 cut(s) 386
LmnI GCTCC 2 cut(s) 16, 300
Lsp1109I GCAGC 3 cut(s) 197, 289, 496
LweI GCATC 2 cut(s) 661, 700
MaeII ACGT 3 cut(s) 96, 435, 557
MalI GATC 1 cut(s) 388
MboI GATC 1 cut(s) 386
MboII GAAGA 2 cut(s) 61, 101
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 3 cut(s) 292, 604, 660
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 1 cut(s) 218
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 2 cut(s) 113, 143
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 187, 248, 372, 375, 380, 383, 498
Mox20I TGGCCA 1 cut(s) 246
Mph1103I ATGCAT 1 cut(s) 676
MroNI GCCGGC 1 cut(s) 568
MscI TGGCCA 1 cut(s) 246
MseI TTAA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 7 cut(s) 180, 380, 384, 401, 413, 569, 598
MspR9I CCNGG 1 cut(s) 599
MvnI CGCG 3 cut(s) 444, 446, 488
MwoI GCNNNNNNNGC 6 cut(s) 11, 207, 277, 283, 292, 413
NaeI GCCGGC 1 cut(s) 570
NciI CCSGG 1 cut(s) 599
NdeII GATC 1 cut(s) 386
NgoMIV GCCGGC 1 cut(s) 568
NlaIII CATG 2 cut(s) 464, 481
NlaIV GGNNCC 5 cut(s) 388, 399, 567, 602, 658
NmeAIII GCCGAG 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 481
PauI GCGCGC 1 cut(s) 442
PdiI GCCGGC 1 cut(s) 570
PfeI GAWTC 3 cut(s) 101, 158, 545
PkrI GCNGC 7 cut(s) 13, 212, 279, 406, 448, 490, 511
PleI GAGTC 2 cut(s) 113, 143
PpsI GAGTC 2 cut(s) 113, 143
Psp124BI GAGCTC 1 cut(s) 292
PspN4I GGNNCC 5 cut(s) 388, 399, 567, 602, 658
PspOMI GGGCCC 2 cut(s) 600, 656
PspPI GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
PstI CTGCAG 1 cut(s) 514
PsuI RGATCY 1 cut(s) 386
PteI GCGCGC 1 cut(s) 442
RsaI GTAC 3 cut(s) 114, 206, 585
RsaNI GTAC 3 cut(s) 113, 205, 584
SacI GAGCTC 1 cut(s) 292
SacII CCGCGG 1 cut(s) 489
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 7 cut(s) 12, 211, 278, 405, 447, 489, 510
Sau3AI GATC 1 cut(s) 386
Sau96I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 2 cut(s) 113, 143
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 3 cut(s) 292, 604, 660
SfaNI GCATC 2 cut(s) 661, 700
SfcI CTRYAG 1 cut(s) 510
Sfr303I CCGCGG 1 cut(s) 489
SgrBI CCGCGG 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 1 cut(s) 218
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 597
TaaI ACNGT 3 cut(s) 188, 319, 530
TaiI ACGT 3 cut(s) 99, 438, 560
TaqI TCGA 2 cut(s) 117, 666
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 204
TauI GCSGC 3 cut(s) 407, 449, 491
TfiI GAWTC 3 cut(s) 101, 158, 545
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 4 cut(s) 11, 210, 277, 509
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 379
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
ZraI GACGTC 1 cut(s) 558
ZrmI AGTACT 1 cut(s) 206
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.