pycom13g03370

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014004
Physical Location & Seq
Forward (+)
2233406 .. 2234110
705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03370.1

Sequence Viewer

Length: 705 bp
ATGGCTGAGGCTGCAGAGCTTCACTATCAACCCAAACCAACCAACAACACAACCACACGCTTAAAACTCTTCGGTTTCAATGTCCAAGAAGACGACGTAGAATCACCCGCCCTACTCGACTCCACCAAGACCGCCACCACGCCTTCCGACTCACCGGAATCCGCCCCCTTCTCCACCTCCGGCGACCGTAAATACGAGTGCCAGTACTGCTGCCGAGAATTCGCCAACTCCCAAGCCCTCGGCGGCCACCAGAACGCCCACAAGAAAGAGCGCCAGCAGCTCAAGCGAGCTCAGCTCCAAGCCAGCCGAAACGCTGCCGTCTCCTACGCCAGAAACCCCATCATCTCCGCCTTCACTCCGCCGCCTCACCTCCTCTCCCCGGCCGGATCCCTGATGGTTCCGGCGGCGTCTCCGGCAAACCCGTCGTGGGTTTACGTCCCTCGCACGGCCACCCCGTTCCATGTGTCGCACGGGTGCGTGTTTCCCGCGGCGGCGAGTCACGGGAGGGCTGCAGGGAGTTATTCCTACGGTGGCGGTGTAGGGGATTCCGCATTGACGTCAATGGGACCGTCTCATCACCAGGTACTACAACAAGGCCGGGCCCACGTGAGAGCGGACGGGCCGTCGTTGAGTAGGTTCACGAAAGGGGATGGTGGGCCCAGTTTGGACGACGAGTTGGGCTTGGACTTGCATCTCAGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

235

Amino Acids

24.89

Weight (kDa)

7.18

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 614
AccII CGCG 1 cut(s) 488
AclWI GGATC 2 cut(s) 381, 394
AcoI YGGCCR 3 cut(s) 244, 381, 447
AcsI RAATTY 1 cut(s) 218
AcvI CACGTG 1 cut(s) 607
AcyI GRCGYC 2 cut(s) 407, 557
AfaI GTAC 2 cut(s) 206, 585
AfiI CCNNNNNNNGG 3 cut(s) 379, 427, 445
AgsI TTSAA 1 cut(s) 79
AhdI GACNNNNNGTC 1 cut(s) 622
AjnI CCWGG 1 cut(s) 579
AluBI AGCT 4 cut(s) 19, 280, 290, 295
AluI AGCT 4 cut(s) 19, 280, 290, 295
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 3 cut(s) 325, 414, 576
AlwI GGATC 2 cut(s) 381, 394
AoxI GGCC 7 cut(s) 244, 381, 447, 595, 600, 620, 656
ApaI GGGCCC 2 cut(s) 604, 660
ApeKI GCWGC 5 cut(s) 11, 210, 277, 314, 509
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
AsuC2I CCSGG 2 cut(s) 380, 599
AsuHPI GGTGA 4 cut(s) 96, 144, 359, 569
AvaII GGWCC 1 cut(s) 566
BaeGI GKGCMC 2 cut(s) 604, 660
BamHI GGATCC 1 cut(s) 386
BanII GRGCYC 3 cut(s) 292, 604, 660
BbrPI CACGTG 1 cut(s) 607
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 292
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 197, 289, 301, 496
BccI CCATC 3 cut(s) 347, 388, 644
BceAI ACGGC 3 cut(s) 302, 462, 607
BcgI CGANNNNNNTGC 2 cut(s) 405, 439
BciT130I CCWGG 1 cut(s) 581
BcnI CCSGG 2 cut(s) 380, 599
BcoDI GTCTC 3 cut(s) 325, 414, 576
BfmI CTRYAG 2 cut(s) 12, 510
BfoI RGCGCY 1 cut(s) 274
BlpI GCTNAGC 1 cut(s) 291
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 3 cut(s) 380, 581, 599
Bme18I GGWCC 1 cut(s) 566
BmeRI GACNNNNNGTC 1 cut(s) 622
BmgT120I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
BmiI GGNNCC 5 cut(s) 388, 399, 567, 602, 658
BmrFI CCNGG 3 cut(s) 380, 581, 599
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 700
BmuI ACTGGG 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 279, 311
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 380, 599
BsaAI YACGTR 1 cut(s) 607
BsaHI GRCGYC 2 cut(s) 407, 557
BsaJI CCNNGG 3 cut(s) 238, 378, 486
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 427, 445
Bse1I ACTGG 2 cut(s) 202, 660
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 3 cut(s) 238, 378, 486
BseGI GGATG 1 cut(s) 655
BseLI CCNNNNNNNGG 3 cut(s) 379, 427, 445
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 202, 660
BseRI GAGGAG 1 cut(s) 362
BseSI GKGCMC 2 cut(s) 604, 660
BseX3I CGGCCG 1 cut(s) 381
BseXI GCAGC 4 cut(s) 197, 289, 301, 496
Bsh1236I CGCG 1 cut(s) 488
Bsh1285I CGRYCG 2 cut(s) 187, 384
BshFI GGCC 7 cut(s) 246, 383, 449, 597, 602, 622, 658
BsiEI CGRYCG 2 cut(s) 187, 384
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 7 cut(s) 155, 180, 380, 384, 401, 413, 598
BslFI GGGAC 2 cut(s) 422, 579
BslI CCNNNNNNNGG 3 cut(s) 379, 427, 445
BsmAI GTCTC 3 cut(s) 325, 414, 576
BsmBI CGTCTC 3 cut(s) 325, 414, 576
BsmFI GGGAC 2 cut(s) 422, 579
BsnI GGCC 7 cut(s) 246, 383, 449, 597, 602, 622, 658
Bsp120I GGGCCC 2 cut(s) 600, 656
Bsp1286I GDGCHC 3 cut(s) 292, 604, 660
Bsp143I GATC 1 cut(s) 386
Bsp1720I GCTNAGC 1 cut(s) 291
BspANI GGCC 7 cut(s) 246, 383, 449, 597, 602, 622, 658
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 1 cut(s) 488
BspLI GGNNCC 5 cut(s) 388, 399, 567, 602, 658
BspMAI CTGCAG 2 cut(s) 16, 514
BspPI GGATC 2 cut(s) 381, 394
BsrBI CCGCTC 1 cut(s) 614
BsrI ACTGG 2 cut(s) 202, 660
BssECI CCNNGG 3 cut(s) 238, 378, 486
BssMI GATC 1 cut(s) 386
BssNI GRCGYC 2 cut(s) 407, 557
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 3 cut(s) 188, 530, 570
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 2 cut(s) 407, 557
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 3 cut(s) 275, 288, 304
BstDEI CTNAG 3 cut(s) 6, 291, 695
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 655
BstFNI CGCG 1 cut(s) 488
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 1 cut(s) 389
BstMAI GTCTC 3 cut(s) 325, 414, 576
BstMBI GATC 1 cut(s) 386
BstMCI CGRYCG 2 cut(s) 187, 384
BstMWI GCNNNNNNNGC 6 cut(s) 11, 207, 277, 283, 292, 413
BstNI CCWGG 1 cut(s) 581
BstSCI CCNGG 3 cut(s) 378, 579, 597
BstSFI CTRYAG 2 cut(s) 12, 510
BstSLI GKGCMC 2 cut(s) 604, 660
BstUI CGCG 1 cut(s) 488
BstV1I GCAGC 4 cut(s) 197, 289, 301, 496
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BstZI CGGCCG 1 cut(s) 381
BsuRI GGCC 7 cut(s) 246, 383, 449, 597, 602, 622, 658
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 1 cut(s) 655
Cac8I GCNNGC 3 cut(s) 275, 288, 304
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
Cfr42I CCGCGG 1 cut(s) 489
CseI GACGC 1 cut(s) 396
CsiI ACCWGGT 1 cut(s) 579
Csp6I GTAC 2 cut(s) 205, 584
CviAII CATG 1 cut(s) 461
CviQI GTAC 2 cut(s) 205, 584
DdeI CTNAG 3 cut(s) 6, 291, 695
DpnI GATC 1 cut(s) 388
DpnII GATC 1 cut(s) 386
DriI GACNNNNNGTC 1 cut(s) 622
EaeI YGGCCR 3 cut(s) 244, 381, 447
EagI CGGCCG 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 74
Eam1105I GACNNNNNGTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 3 cut(s) 151, 337, 348
Ecl136II GAGCTC 1 cut(s) 290
EclXI CGGCCG 1 cut(s) 381
Eco24I GRGCYC 3 cut(s) 292, 604, 660
Eco47I GGWCC 1 cut(s) 566
Eco52I CGGCCG 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 290
Eco72I CACGTG 1 cut(s) 607
EcoICRI GAGCTC 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 579
EcoT38I GRGCYC 3 cut(s) 292, 604, 660
Esp3I CGTCTC 3 cut(s) 325, 414, 576
FaeI CATG 1 cut(s) 464
FaiI YATR 1 cut(s) 462
FaqI GGGAC 2 cut(s) 422, 579
FatI CATG 1 cut(s) 460
FauI CCCGC 2 cut(s) 115, 493
FokI GGATG 1 cut(s) 662
FriOI GRGCYC 3 cut(s) 292, 604, 660
GlaI GCGC 1 cut(s) 272
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 7 cut(s) 246, 383, 449, 597, 602, 622, 658
HapII CCGG 7 cut(s) 155, 180, 380, 384, 401, 413, 598
HgaI GACGC 1 cut(s) 396
HhaI GCGC 1 cut(s) 273
Hin1I GRCGYC 2 cut(s) 407, 557
Hin1II CATG 1 cut(s) 464
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HinfI GANTC 6 cut(s) 101, 119, 149, 158, 496, 545
HpaII CCGG 7 cut(s) 155, 180, 380, 384, 401, 413, 598
HphI GGTGA 4 cut(s) 96, 144, 359, 569
Hpy166II GTNNAC 2 cut(s) 433, 639
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 640
Hpy8I GTNNAC 2 cut(s) 433, 639
Hpy99I CGWCG 4 cut(s) 98, 427, 628, 674
HpyAV CCTTC 3 cut(s) 153, 178, 361
HpyCH4III ACNGT 3 cut(s) 188, 530, 570
HpyCH4IV ACGT 4 cut(s) 96, 435, 557, 606
HpyCH4V TGCA 3 cut(s) 14, 512, 691
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 207, 277, 283, 292, 413
HpyF3I CTNAG 3 cut(s) 6, 291, 695
HpySE526I ACGT 4 cut(s) 96, 435, 557, 606
Hsp92I GRCGYC 2 cut(s) 407, 557
Hsp92II CATG 1 cut(s) 464
HspAI GCGC 1 cut(s) 271
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 1 cut(s) 386
LmnI GCTCC 1 cut(s) 300
Lsp1109I GCAGC 4 cut(s) 197, 289, 301, 496
LweI GCATC 1 cut(s) 700
MabI ACCWGGT 1 cut(s) 579
MaeII ACGT 4 cut(s) 96, 435, 557, 606
MaeIII GTNAC 1 cut(s) 497
MalI GATC 1 cut(s) 388
MbiI CCGCTC 1 cut(s) 614
MboI GATC 1 cut(s) 386
MboII GAAGA 2 cut(s) 61, 101
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 3 cut(s) 292, 604, 660
MluCI AATT 1 cut(s) 218
MlyI GAGTC 3 cut(s) 113, 143, 505
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 187, 248, 375, 380, 383, 450, 498
MseI TTAA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 7 cut(s) 155, 180, 380, 384, 401, 413, 598
MspR9I CCNGG 3 cut(s) 380, 581, 599
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 1 cut(s) 488
MwoI GCNNNNNNNGC 6 cut(s) 11, 207, 277, 283, 292, 413
NciI CCSGG 2 cut(s) 380, 599
NdeII GATC 1 cut(s) 386
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 5 cut(s) 388, 399, 567, 602, 658
NmeAIII GCCGAG 2 cut(s) 219, 239
NmuCI GTSAC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PfeI GAWTC 3 cut(s) 101, 158, 545
PleI GAGTC 3 cut(s) 113, 143, 504
PmaCI CACGTG 1 cut(s) 607
PmlI CACGTG 1 cut(s) 607
PpsI GAGTC 3 cut(s) 113, 143, 504
Ppu21I YACGTR 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 579
PspCI CACGTG 1 cut(s) 607
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 5 cut(s) 388, 399, 567, 602, 658
PspOMI GGGCCC 2 cut(s) 600, 656
PspPI GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
PstI CTGCAG 2 cut(s) 16, 514
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 2 cut(s) 206, 585
RsaNI GTAC 2 cut(s) 205, 584
SacI GAGCTC 1 cut(s) 292
SacII CCGCGG 1 cut(s) 489
SaqAI TTAA 1 cut(s) 62
Sau3AI GATC 1 cut(s) 386
Sau96I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 3 cut(s) 113, 143, 505
ScrFI CCNGG 3 cut(s) 380, 581, 599
SduI GDGCHC 3 cut(s) 292, 604, 660
SexAI ACCWGGT 1 cut(s) 579
SfaNI GCATC 1 cut(s) 700
SfcI CTRYAG 2 cut(s) 12, 510
Sfr303I CCGCGG 1 cut(s) 489
SgrBI CCGCGG 1 cut(s) 489
SinI GGWCC 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 1 cut(s) 218
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 3 cut(s) 378, 579, 597
TaaI ACNGT 3 cut(s) 188, 530, 570
TaiI ACGT 4 cut(s) 99, 438, 560, 609
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 204
TauI GCSGC 5 cut(s) 246, 364, 407, 491, 494
TfiI GAWTC 3 cut(s) 101, 158, 545
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 5 cut(s) 11, 210, 277, 314, 509
Tsp45I GTSAC 1 cut(s) 497
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 1 cut(s) 218
ZraI GACGTC 1 cut(s) 558
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.