Rroxscaffold_5G00376030

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014004
Physical Location & Seq
Forward (+)
56800500 .. 56801237
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376030.1

Sequence Viewer

Length: 738 bp
ATGGCAGAGGCTGCAGAAAGAGAGCTGCAATATCAAATCAGACCAATCAATACCTCTAATAATACTAGTAGTGCTGCTACTTCTCCAACCACCACGCGCTTGAAGCTCTTTGGCTTCAATGTCAACCAGCACCAAGACGACGTCGACGAAGCCGTTGTGCTCGACTCCGCCAAGACCACTCCATCCGGATCGCCGGAATCCGGTGGATTTTCCACCGCCGGCGACCGGAAGTACGAGTGCCAGTACTGCTGCCGAGAATTCGCCAACTCTCAAGCGCTCGGCGGCCACCAAAACGCTCACAAGAAGGAGAGGCAGCAGCTCAAGCGGGCCCAGCTCCAGGCCAGCCGAAACGCTGCCGTTTCTTACGCTCGGAACCCCATAATCTCCGCCTTCGCGCCGCCGCACCACCTGCTGGCTCCGCCGGGGTCCGTGATGGTTCCGTCGACGTCTCCGACGTCCCCGTCGTGGGTTTACGTGCCTCGCGCCGCGACGCCATTCCAGGTGTCGCACGGCTGCGTGTTTCCGGCGGCGTCGGGTAATGGGAGGGGCGGAGGGAGCTATGCCTACGGCGGAGGCGGCGGAGGGGAGTCGGCATTGACGATGATGGGGCCGCAGGTGCAGCAGGGCCACCGGGCCCATGGAAGAGCTGACGGGCCATCGTTGAGTAGGTTCACCAAGGGGGATGGTGGGCCCGGTTTTGACGATGGGCTGGGCTTGGACTTGCAACTCAGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

245

Amino Acids

25.72

Weight (kDa)

8.37

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 417, 604
AasI GACNNNNNNGTC 1 cut(s) 460
AatII GACGTC 3 cut(s) 144, 449, 458
Acc36I ACCTGC 2 cut(s) 417, 604
AccB7I CCANNNNNTGG 1 cut(s) 412
AccI GTMKAC 2 cut(s) 144, 443
AccII CGCG 4 cut(s) 97, 395, 483, 488
AccIII TCCGGA 1 cut(s) 185
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 5 cut(s) 141, 446, 455, 491, 530
AfaI GTAC 2 cut(s) 233, 245
AfeI AGCGCT 1 cut(s) 276
AfiI CCNNNNNNNGG 6 cut(s) 200, 225, 337, 412, 465, 466
AgsI TTSAA 2 cut(s) 103, 118
AhlI ACTAGT 1 cut(s) 65
AjnI CCWGG 2 cut(s) 336, 498
AluBI AGCT 6 cut(s) 25, 106, 319, 334, 558, 647
AluI AGCT 6 cut(s) 25, 106, 319, 334, 558, 647
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 2 cut(s) 11, 735
Aor13HI TCCGGA 1 cut(s) 185
Aor51HI AGCGCT 1 cut(s) 276
AoxI GGCC 8 cut(s) 283, 327, 339, 608, 625, 633, 653, 689
ApaI GGGCCC 3 cut(s) 331, 637, 693
ApeKI GCWGC 9 cut(s) 11, 25, 74, 249, 313, 316, 353, 513, 619
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 4 cut(s) 99, 277, 397, 485
AsuC2I CCSGG 3 cut(s) 423, 632, 693
AsuHPI GGTGA 1 cut(s) 664
AvaII GGWCC 1 cut(s) 426
BaeGI GKGCMC 3 cut(s) 331, 637, 693
BanII GRGCYC 3 cut(s) 331, 637, 693
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 8 cut(s) 12, 61, 236, 325, 328, 340, 500, 631
BccI CCATC 6 cut(s) 190, 427, 598, 664, 677, 698
BceAI ACGGC 4 cut(s) 137, 341, 526, 583
BciT130I CCWGG 2 cut(s) 338, 500
BcnI CCSGG 3 cut(s) 423, 632, 693
BcoDI GTCTC 1 cut(s) 453
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 278
BfuAI ACCTGC 2 cut(s) 417, 604
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 5 cut(s) 338, 423, 500, 632, 693
Bme18I GGWCC 1 cut(s) 426
BmiI GGNNCC 8 cut(s) 329, 374, 417, 427, 438, 609, 635, 691
BmrFI CCNGG 5 cut(s) 338, 423, 500, 632, 693
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 2 cut(s) 255, 305
BpuMI CCSGG 3 cut(s) 423, 632, 693
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 5 cut(s) 141, 446, 455, 491, 530
BsaJI CCNNGG 3 cut(s) 422, 637, 675
BsaWI WCCGGW 3 cut(s) 185, 200, 225
Bsc4I CCNNNNNNNGG 6 cut(s) 200, 225, 337, 412, 465, 466
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 241
BseAI TCCGGA 1 cut(s) 185
BseBI CCWGG 2 cut(s) 338, 500
BseDI CCNNGG 3 cut(s) 422, 637, 675
BseGI GGATG 2 cut(s) 182, 688
BseLI CCNNNNNNNGG 6 cut(s) 200, 225, 337, 412, 465, 466
BseNI ACTGG 1 cut(s) 241
BseSI GKGCMC 3 cut(s) 331, 637, 693
BseXI GCAGC 8 cut(s) 12, 61, 236, 325, 328, 340, 500, 631
BseYI CCCAGC 2 cut(s) 330, 709
BsgI GTGCAG 1 cut(s) 638
Bsh1236I CGCG 4 cut(s) 97, 395, 483, 488
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 8 cut(s) 285, 329, 341, 610, 627, 635, 655, 691
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 9 cut(s) 186, 194, 201, 219, 226, 422, 524, 631, 693
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 6 cut(s) 200, 225, 337, 412, 465, 466
BsmAI GTCTC 1 cut(s) 453
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 8 cut(s) 285, 329, 341, 610, 627, 635, 655, 691
Bsp120I GGGCCC 3 cut(s) 327, 633, 689
Bsp1286I GDGCHC 4 cut(s) 162, 331, 637, 693
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 1 cut(s) 188
Bsp19I CCATGG 1 cut(s) 637
BspANI GGCC 8 cut(s) 285, 329, 341, 610, 627, 635, 655, 691
BspEI TCCGGA 1 cut(s) 185
BspFNI CGCG 4 cut(s) 97, 395, 483, 488
BspLI GGNNCC 8 cut(s) 329, 374, 417, 427, 438, 609, 635, 691
BspMAI CTGCAG 1 cut(s) 16
BspMI ACCTGC 2 cut(s) 417, 604
BspPI GGATC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 637
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 422, 637, 675
BssMI GATC 1 cut(s) 188
BssNI GRCGYC 5 cut(s) 141, 446, 455, 491, 530
BssT1I CCWWGG 2 cut(s) 637, 675
Bst2UI CCWGG 2 cut(s) 338, 500
Bst6I CTCTTC 1 cut(s) 637
BstACI GRCGYC 5 cut(s) 141, 446, 455, 491, 530
BstAPI GCANNNNNTGC 2 cut(s) 11, 409
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 4 cut(s) 220, 327, 343, 414
BstDEI CTNAG 1 cut(s) 728
BstDSI CCRYGG 1 cut(s) 637
BstF5I GGATG 2 cut(s) 182, 688
BstFNI CGCG 4 cut(s) 97, 395, 483, 488
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 4 cut(s) 99, 277, 397, 485
BstKTI GATC 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 1 cut(s) 188
BstMCI CGRYCG 1 cut(s) 226
BstNI CCWGG 2 cut(s) 338, 500
BstSCI CCNGG 5 cut(s) 336, 421, 498, 630, 691
BstSFI CTRYAG 1 cut(s) 12
BstSLI GKGCMC 3 cut(s) 331, 637, 693
BstUI CGCG 4 cut(s) 97, 395, 483, 488
BstV1I GCAGC 8 cut(s) 12, 61, 236, 325, 328, 340, 500, 631
BsuRI GGCC 8 cut(s) 285, 329, 341, 610, 627, 635, 655, 691
BtgI CCRYGG 1 cut(s) 637
BtsCI GGATG 2 cut(s) 182, 688
BveI ACCTGC 2 cut(s) 417, 604
Cac8I GCNNGC 4 cut(s) 220, 327, 343, 414
CaiI CAGNNNCTG 2 cut(s) 11, 735
CfoI GCGC 4 cut(s) 99, 277, 397, 485
Cfr10I RCCGGY 1 cut(s) 218
CseI GACGC 2 cut(s) 499, 519
Csp6I GTAC 2 cut(s) 232, 244
CviAII CATG 1 cut(s) 638
CviQI GTAC 2 cut(s) 232, 244
DdeI CTNAG 1 cut(s) 728
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
EciI GGCGGA 6 cut(s) 157, 376, 408, 564, 585, 594
Eco130I CCWWGG 2 cut(s) 637, 675
Eco24I GRGCYC 3 cut(s) 331, 637, 693
Eco47I GGWCC 1 cut(s) 426
Eco47III AGCGCT 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 336, 498
EcoT14I CCWWGG 2 cut(s) 637, 675
EcoT38I GRGCYC 3 cut(s) 331, 637, 693
ErhI CCWWGG 2 cut(s) 637, 675
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 1 cut(s) 641
FaiI YATR 3 cut(s) 380, 561, 639
FaqI GGGAC 1 cut(s) 442
FatI CATG 1 cut(s) 637
FauI CCCGC 1 cut(s) 318
FblI GTMKAC 2 cut(s) 144, 443
FokI GGATG 2 cut(s) 169, 695
FriOI GRGCYC 3 cut(s) 331, 637, 693
FspBI CTAG 1 cut(s) 66
GlaI GCGC 4 cut(s) 98, 276, 396, 484
GsaI CCCAGC 2 cut(s) 334, 713
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 8 cut(s) 285, 329, 341, 610, 627, 635, 655, 691
HapII CCGG 9 cut(s) 186, 194, 201, 219, 226, 422, 524, 631, 693
HgaI GACGC 2 cut(s) 499, 519
HhaI GCGC 4 cut(s) 99, 277, 397, 485
Hin1I GRCGYC 5 cut(s) 141, 446, 455, 491, 530
Hin1II CATG 1 cut(s) 641
Hin6I GCGC 4 cut(s) 97, 275, 395, 483
HinP1I GCGC 4 cut(s) 97, 275, 395, 483
HincII GTYRAC 3 cut(s) 124, 145, 444
HindII GTYRAC 3 cut(s) 124, 145, 444
HinfI GANTC 3 cut(s) 164, 197, 587
HpaII CCGG 9 cut(s) 186, 194, 201, 219, 226, 422, 524, 631, 693
HphI GGTGA 1 cut(s) 664
Hpy166II GTNNAC 5 cut(s) 124, 145, 444, 472, 672
Hpy188I TCNGA 4 cut(s) 41, 372, 453, 737
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 5 cut(s) 124, 145, 444, 472, 672
Hpy99I CGWCG 9 cut(s) 143, 146, 149, 445, 448, 457, 466, 493, 535
HpyAV CCTTC 2 cut(s) 298, 400
HpyCH4IV ACGT 4 cut(s) 141, 446, 455, 474
HpyCH4V TGCA 4 cut(s) 14, 28, 619, 724
HpyF3I CTNAG 1 cut(s) 728
HpySE526I ACGT 4 cut(s) 141, 446, 455, 474
Hsp92I GRCGYC 5 cut(s) 141, 446, 455, 491, 530
Hsp92II CATG 1 cut(s) 641
HspAI GCGC 4 cut(s) 97, 275, 395, 483
Kpn2I TCCGGA 1 cut(s) 185
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 637
LmnI GCTCC 3 cut(s) 339, 421, 555
Lsp1109I GCAGC 8 cut(s) 12, 61, 236, 325, 328, 340, 500, 631
MaeI CTAG 1 cut(s) 66
MaeII ACGT 4 cut(s) 141, 446, 455, 474
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 1 cut(s) 654
MhlI GDGCHC 4 cut(s) 162, 331, 637, 693
MluCI AATT 1 cut(s) 257
MlyI GAGTC 2 cut(s) 158, 596
MmeI TCCRAC 2 cut(s) 110, 476
MnlI CCTC 7 cut(s) 64, 303, 489, 537, 545, 566, 575
MreI CGCCGGCG 1 cut(s) 218
MroI TCCGGA 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 218
MspI CCGG 9 cut(s) 186, 194, 201, 219, 226, 422, 524, 631, 693
MspR9I CCNGG 5 cut(s) 338, 423, 500, 632, 693
MvaI CCWGG 2 cut(s) 338, 500
MvnI CGCG 4 cut(s) 97, 395, 483, 488
NaeI GCCGGC 1 cut(s) 220
NciI CCSGG 3 cut(s) 423, 632, 693
NcoI CCATGG 1 cut(s) 637
NdeII GATC 1 cut(s) 188
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 1 cut(s) 641
NlaIV GGNNCC 8 cut(s) 329, 374, 417, 427, 438, 609, 635, 691
NmeAIII GCCGAG 2 cut(s) 258, 278
PaqCI CACCTGC 2 cut(s) 417, 604
PciSI GCTCTTC 1 cut(s) 637
PcsI WCGNNNNNNNCGW 6 cut(s) 144, 150, 449, 452, 461, 596
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 197
PflFI GACNNNGTC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 412
PleI GAGTC 2 cut(s) 158, 595
PpsI GAGTC 2 cut(s) 158, 595
Ppu21I YACGTR 1 cut(s) 475
Psp6I CCWGG 2 cut(s) 336, 498
PspFI CCCAGC 2 cut(s) 330, 709
PspGI CCWGG 2 cut(s) 336, 498
PspN4I GGNNCC 8 cut(s) 329, 374, 417, 427, 438, 609, 635, 691
PspOMI GGGCCC 3 cut(s) 327, 633, 689
PstI CTGCAG 1 cut(s) 16
PstNI CAGNNNCTG 2 cut(s) 11, 735
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 2 cut(s) 233, 245
RsaNI GTAC 2 cut(s) 232, 244
SalI GTCGAC 2 cut(s) 143, 442
SapI GCTCTTC 1 cut(s) 637
Sau3AI GATC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 2 cut(s) 158, 596
ScrFI CCNGG 5 cut(s) 338, 423, 500, 632, 693
SduI GDGCHC 4 cut(s) 162, 331, 637, 693
SfcI CTRYAG 1 cut(s) 12
SgrAI CRCCGGYG 1 cut(s) 218
SgrDI CGTCGACG 2 cut(s) 143, 442
SinI GGWCC 1 cut(s) 426
SmlI CTYRAG 2 cut(s) 270, 320
SmoI CTYRAG 2 cut(s) 270, 320
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 257
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 5 cut(s) 336, 421, 498, 630, 691
StyI CCWWGG 2 cut(s) 637, 675
TaiI ACGT 4 cut(s) 144, 449, 458, 477
TaqI TCGA 3 cut(s) 144, 162, 443
TasI AATT 1 cut(s) 257
TatI WGTACW 1 cut(s) 243
TauI GCSGC 7 cut(s) 285, 400, 403, 488, 530, 579, 613
TfiI GAWTC 1 cut(s) 197
TseI GCWGC 9 cut(s) 11, 25, 74, 249, 313, 316, 353, 513, 619
TspGWI ACGGA 2 cut(s) 418, 429
Tth111I GACNNNGTC 1 cut(s) 140
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 426
XapI RAATTY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XmiI GTMKAC 2 cut(s) 144, 443
XspI CTAG 1 cut(s) 66
ZraI GACGTC 3 cut(s) 142, 447, 456
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.