RchiOBHm_Chr4g0434821

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014004
Physical Location & Seq
Forward (+)
58478690 .. 58479834
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40326

Sequence Viewer

Length: 861 bp
ATGCAACAACTCCACTACATCCCTCATTTGAGTTATTTCTTCTCTCCCCTTCCCTTCTCTCTCTCTCTCTCTCTCTCTCCCCTCTTTTCTCTTCCCTCATCTGAAGCTCTCTGTGTTTCTAAGATGGCAGAGGCTGCAGAAAGAGAGCTCCAATATCAAATCAGACCAATCAATACCTCTAATAATACTAGTAGTGCTGCTACTTCTCCAACCACCACGCGCTTGAAGCTCTTTGGCTTCAATGTCAACCAGCACCAAGACGACGTCGACGAAGCCGTTGTGCTCGACTCCGCCAAGACCACTCCATCCGGATCGCCGGAATCCGGCGGATTTTCCACCGCCGGCGACCGGAAGTACGAGTGCCAGTACTGCTGCCGAGAATTCGCCAACTCTCAAGCGCTCGGCGGCCACCAAAACGCTCACAAGAAGGAGAGGCAGCAGCTCAAGCGGGCCCAGCTCCAGGCCAGCCGAAACGCCGCCGTTTCTTACGCTCGGAACCCCATAATCTCCGCCTTCGCGCCGCCGCACCACCTGCTGGCTCCGCCGGGGTCCGTGATGGTTCCGTCCACGTCTCCGGCGTCCCCGTCGTGGGTTTACGTGCCTCGCGCCGCGACGCCGTTCCAGGTGTCGCACGGCTGCGTGTTTCCAGCGGCGTCGGGTAATGGGAGGGGCGGAGGGAGCTTTGCCTACGGCGGAGGCGGCGGAGGGGAGTCGGCATTGACGATGATGGGGCCGCAAGTGCAGCAGGGCCACCGGGCCCATGGAAGAGCTGACGGGCCATCGTTGAGTAGGTTCACTAAGGGGGATGGTGGGCCCTGTTTGGACGATGGGCTGGGCTTGGACTTGCAACTCAGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

286

Amino Acids

30.28

Weight (kDa)

8.22

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 540
AatII GACGTC 1 cut(s) 267
Acc36I ACCTGC 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 535
AccI GTMKAC 1 cut(s) 267
AccII CGCG 4 cut(s) 220, 518, 606, 611
AccIII TCCGGA 1 cut(s) 308
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 4 cut(s) 264, 578, 614, 653
AfaI GTAC 2 cut(s) 356, 368
AfeI AGCGCT 1 cut(s) 399
AfiI CCNNNNNNNGG 6 cut(s) 323, 348, 460, 535, 588, 589
AgsI TTSAA 2 cut(s) 226, 241
AhlI ACTAGT 1 cut(s) 188
AjiI CACGTC 1 cut(s) 570
AjnI CCWGG 2 cut(s) 459, 621
AluBI AGCT 7 cut(s) 107, 148, 229, 442, 457, 681, 770
AluI AGCT 7 cut(s) 107, 148, 229, 442, 457, 681, 770
Alw21I GWGCWC 2 cut(s) 150, 285
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 1 cut(s) 319
AlwNI CAGNNNCTG 2 cut(s) 134, 858
Aor13HI TCCGGA 1 cut(s) 308
Aor51HI AGCGCT 1 cut(s) 399
AoxI GGCC 8 cut(s) 406, 450, 462, 731, 748, 756, 776, 812
ApaI GGGCCC 3 cut(s) 454, 760, 816
ApeKI GCWGC 7 cut(s) 134, 197, 372, 436, 439, 636, 742
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 4 cut(s) 222, 400, 520, 608
AsuC2I CCSGG 2 cut(s) 546, 755
AvaII GGWCC 1 cut(s) 549
BaeGI GKGCMC 3 cut(s) 454, 760, 816
BanII GRGCYC 4 cut(s) 150, 454, 760, 816
Bbv12I GWGCWC 2 cut(s) 150, 285
BbvI GCAGC 7 cut(s) 121, 184, 359, 448, 451, 623, 754
BccI CCATC 7 cut(s) 118, 313, 550, 721, 787, 800, 821
BceAI ACGGC 5 cut(s) 260, 464, 601, 649, 706
BciT130I CCWGG 2 cut(s) 461, 623
BcnI CCSGG 2 cut(s) 546, 755
BcoDI GTCTC 1 cut(s) 576
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 540
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 4 cut(s) 461, 546, 623, 755
Bme18I GGWCC 1 cut(s) 549
BmgBI CACGTC 1 cut(s) 570
BmiI GGNNCC 8 cut(s) 452, 497, 540, 550, 561, 732, 758, 814
BmrFI CCNGG 4 cut(s) 461, 546, 623, 755
BpmI CTGGAG 1 cut(s) 443
BpuEI CTTGAG 2 cut(s) 378, 428
BpuMI CCSGG 2 cut(s) 546, 755
BsaAI YACGTR 1 cut(s) 598
BsaHI GRCGYC 4 cut(s) 264, 578, 614, 653
BsaJI CCNNGG 2 cut(s) 545, 760
BsaWI WCCGGW 2 cut(s) 308, 348
Bsc4I CCNNNNNNNGG 6 cut(s) 323, 348, 460, 535, 588, 589
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 364
BseAI TCCGGA 1 cut(s) 308
BseBI CCWGG 2 cut(s) 461, 623
BseDI CCNNGG 2 cut(s) 545, 760
BseGI GGATG 3 cut(s) 18, 305, 811
BseLI CCNNNNNNNGG 6 cut(s) 323, 348, 460, 535, 588, 589
BseNI ACTGG 1 cut(s) 364
BseSI GKGCMC 3 cut(s) 454, 760, 816
BseXI GCAGC 7 cut(s) 121, 184, 359, 448, 451, 623, 754
BseYI CCCAGC 2 cut(s) 453, 832
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 4 cut(s) 220, 518, 606, 611
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 8 cut(s) 408, 452, 464, 733, 750, 758, 778, 814
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 2 cut(s) 150, 285
BsiSI CCGG 8 cut(s) 309, 317, 324, 342, 349, 545, 575, 754
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 6 cut(s) 323, 348, 460, 535, 588, 589
BsmAI GTCTC 1 cut(s) 576
BsmBI CGTCTC 1 cut(s) 576
BsmFI GGGAC 1 cut(s) 565
BsnI GGCC 8 cut(s) 408, 452, 464, 733, 750, 758, 778, 814
Bsp120I GGGCCC 3 cut(s) 450, 756, 812
Bsp1286I GDGCHC 5 cut(s) 150, 285, 454, 760, 816
Bsp13I TCCGGA 1 cut(s) 308
Bsp143I GATC 1 cut(s) 311
Bsp19I CCATGG 1 cut(s) 760
BspANI GGCC 8 cut(s) 408, 452, 464, 733, 750, 758, 778, 814
BspEI TCCGGA 1 cut(s) 308
BspFNI CGCG 4 cut(s) 220, 518, 606, 611
BspLI GGNNCC 8 cut(s) 452, 497, 540, 550, 561, 732, 758, 814
BspMAI CTGCAG 1 cut(s) 139
BspMI ACCTGC 1 cut(s) 540
BspPI GGATC 1 cut(s) 319
BspQI GCTCTTC 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 545, 760
BssMI GATC 1 cut(s) 311
BssNI GRCGYC 4 cut(s) 264, 578, 614, 653
BssT1I CCWWGG 1 cut(s) 760
Bst2UI CCWGG 2 cut(s) 461, 623
Bst6I CTCTTC 2 cut(s) 96, 760
BstACI GRCGYC 4 cut(s) 264, 578, 614, 653
BstAPI GCANNNNNTGC 2 cut(s) 134, 532
BstBAI YACGTR 1 cut(s) 598
BstC8I GCNNGC 4 cut(s) 343, 450, 466, 537
BstDEI CTNAG 3 cut(s) 120, 798, 851
BstDSI CCRYGG 1 cut(s) 760
BstF5I GGATG 3 cut(s) 18, 305, 811
BstFNI CGCG 4 cut(s) 220, 518, 606, 611
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 4 cut(s) 222, 400, 520, 608
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 1 cut(s) 311
BstMCI CGRYCG 1 cut(s) 349
BstNI CCWGG 2 cut(s) 461, 623
BstSCI CCNGG 4 cut(s) 459, 544, 621, 753
BstSFI CTRYAG 1 cut(s) 135
BstSLI GKGCMC 3 cut(s) 454, 760, 816
BstUI CGCG 4 cut(s) 220, 518, 606, 611
BstV1I GCAGC 7 cut(s) 121, 184, 359, 448, 451, 623, 754
BsuRI GGCC 8 cut(s) 408, 452, 464, 733, 750, 758, 778, 814
BtgI CCRYGG 1 cut(s) 760
BtrI CACGTC 1 cut(s) 570
BtsCI GGATG 3 cut(s) 18, 305, 811
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 4 cut(s) 343, 450, 466, 537
CaiI CAGNNNCTG 2 cut(s) 134, 858
CfoI GCGC 4 cut(s) 222, 400, 520, 608
Cfr10I RCCGGY 1 cut(s) 341
CseI GACGC 3 cut(s) 567, 622, 642
Csp6I GTAC 2 cut(s) 355, 367
CviAII CATG 1 cut(s) 761
CviQI GTAC 2 cut(s) 355, 367
DdeI CTNAG 3 cut(s) 120, 798, 851
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 96, 760
EarI CTCTTC 2 cut(s) 96, 760
EciI GGCGGA 7 cut(s) 280, 342, 499, 531, 687, 708, 717
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 760
Eco24I GRGCYC 4 cut(s) 150, 454, 760, 816
Eco47I GGWCC 1 cut(s) 549
Eco47III AGCGCT 1 cut(s) 399
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 813
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 459, 621
EcoT14I CCWWGG 1 cut(s) 760
EcoT38I GRGCYC 4 cut(s) 150, 454, 760, 816
ErhI CCWWGG 1 cut(s) 760
Esp3I CGTCTC 1 cut(s) 576
FaeI CATG 1 cut(s) 764
FaiI YATR 2 cut(s) 503, 762
FaqI GGGAC 1 cut(s) 565
FatI CATG 1 cut(s) 760
FauI CCCGC 1 cut(s) 441
FblI GTMKAC 1 cut(s) 267
FokI GGATG 3 cut(s) 5, 292, 818
FriOI GRGCYC 4 cut(s) 150, 454, 760, 816
FspBI CTAG 1 cut(s) 189
GlaI GCGC 4 cut(s) 221, 399, 519, 607
GsaI CCCAGC 2 cut(s) 457, 836
GsuI CTGGAG 1 cut(s) 443
HaeII RGCGCY 1 cut(s) 401
HaeIII GGCC 8 cut(s) 408, 452, 464, 733, 750, 758, 778, 814
HapII CCGG 8 cut(s) 309, 317, 324, 342, 349, 545, 575, 754
HgaI GACGC 3 cut(s) 567, 622, 642
HhaI GCGC 4 cut(s) 222, 400, 520, 608
Hin1I GRCGYC 4 cut(s) 264, 578, 614, 653
Hin1II CATG 1 cut(s) 764
Hin6I GCGC 4 cut(s) 220, 398, 518, 606
HinP1I GCGC 4 cut(s) 220, 398, 518, 606
HincII GTYRAC 2 cut(s) 247, 268
HindII GTYRAC 2 cut(s) 247, 268
HinfI GANTC 3 cut(s) 287, 320, 710
HpaII CCGG 8 cut(s) 309, 317, 324, 342, 349, 545, 575, 754
Hpy166II GTNNAC 5 cut(s) 247, 268, 567, 595, 795
Hpy188I TCNGA 4 cut(s) 103, 164, 495, 860
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 5 cut(s) 247, 268, 567, 595, 795
Hpy99I CGWCG 6 cut(s) 266, 269, 272, 589, 616, 658
HpyAV CCTTC 4 cut(s) 59, 64, 421, 523
HpyCH4IV ACGT 3 cut(s) 264, 569, 597
HpyCH4V TGCA 4 cut(s) 4, 137, 742, 847
HpyF3I CTNAG 3 cut(s) 120, 798, 851
HpySE526I ACGT 3 cut(s) 264, 569, 597
Hsp92I GRCGYC 4 cut(s) 264, 578, 614, 653
Hsp92II CATG 1 cut(s) 764
HspAI GCGC 4 cut(s) 220, 398, 518, 606
Kpn2I TCCGGA 1 cut(s) 308
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Kzo9I GATC 1 cut(s) 311
LguI GCTCTTC 1 cut(s) 760
LmnI GCTCC 4 cut(s) 153, 462, 544, 678
Lsp1109I GCAGC 7 cut(s) 121, 184, 359, 448, 451, 623, 754
MaeI CTAG 1 cut(s) 189
MaeII ACGT 3 cut(s) 264, 569, 597
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 3 cut(s) 31, 83, 777
MhlI GDGCHC 5 cut(s) 150, 285, 454, 760, 816
MluCI AATT 1 cut(s) 380
MlyI GAGTC 2 cut(s) 281, 719
MmeI TCCRAC 1 cut(s) 233
MreI CGCCGGCG 1 cut(s) 341
MroI TCCGGA 1 cut(s) 308
MroNI GCCGGC 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 8 cut(s) 309, 317, 324, 342, 349, 545, 575, 754
MspR9I CCNGG 4 cut(s) 461, 546, 623, 755
MvaI CCWGG 2 cut(s) 461, 623
MvnI CGCG 4 cut(s) 220, 518, 606, 611
NaeI GCCGGC 1 cut(s) 343
NciI CCSGG 2 cut(s) 546, 755
NcoI CCATGG 1 cut(s) 760
NdeII GATC 1 cut(s) 311
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 1 cut(s) 764
NlaIV GGNNCC 8 cut(s) 452, 497, 540, 550, 561, 732, 758, 814
NmeAIII GCCGAG 2 cut(s) 381, 401
PaqCI CACCTGC 1 cut(s) 540
PciSI GCTCTTC 1 cut(s) 760
PcsI WCGNNNNNNNCGW 4 cut(s) 267, 273, 575, 719
PdiI GCCGGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 320
PflFI GACNNNGTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 535
PleI GAGTC 2 cut(s) 281, 718
PpsI GAGTC 2 cut(s) 281, 718
Ppu21I YACGTR 1 cut(s) 598
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 459, 621
PspFI CCCAGC 2 cut(s) 453, 832
PspGI CCWGG 2 cut(s) 459, 621
PspN4I GGNNCC 8 cut(s) 452, 497, 540, 550, 561, 732, 758, 814
PspOMI GGGCCC 3 cut(s) 450, 756, 812
PstI CTGCAG 1 cut(s) 139
PstNI CAGNNNCTG 2 cut(s) 134, 858
PsyI GACNNNGTC 1 cut(s) 263
RsaI GTAC 2 cut(s) 356, 368
RsaNI GTAC 2 cut(s) 355, 367
SacI GAGCTC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 760
Sau3AI GATC 1 cut(s) 311
ScaI AGTACT 1 cut(s) 368
SchI GAGTC 2 cut(s) 281, 719
ScrFI CCNGG 4 cut(s) 461, 546, 623, 755
SduI GDGCHC 5 cut(s) 150, 285, 454, 760, 816
SfcI CTRYAG 1 cut(s) 135
SgrAI CRCCGGYG 1 cut(s) 341
SgrDI CGTCGACG 1 cut(s) 266
SinI GGWCC 1 cut(s) 549
SmlI CTYRAG 2 cut(s) 393, 443
SmoI CTYRAG 2 cut(s) 393, 443
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 1 cut(s) 380
SspMI CTAG 1 cut(s) 189
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 459, 544, 621, 753
StyI CCWWGG 1 cut(s) 760
TaiI ACGT 3 cut(s) 267, 572, 600
TaqI TCGA 2 cut(s) 267, 285
TasI AATT 1 cut(s) 380
TatI WGTACW 1 cut(s) 366
TauI GCSGC 8 cut(s) 408, 479, 523, 526, 611, 653, 702, 736
TfiI GAWTC 1 cut(s) 320
TseI GCWGC 7 cut(s) 134, 197, 372, 436, 439, 636, 742
TspGWI ACGGA 2 cut(s) 541, 552
Tth111I GACNNNGTC 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 549
XapI RAATTY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 758
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 189
ZraI GACGTC 1 cut(s) 265
ZrmI AGTACT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.