Prupe.1G314000_v2.0.a1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014004
Physical Location & Seq
Reverse (-)
30385212 .. 30386093
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G314000.1

Sequence Viewer

Length: 882 bp
ATGCACAACTCCCCCTACATCCCCATTTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAGCTCCCCTCATCACTTCAATTGAATTCCCATCTTTCTTTCTCTGCTTTCTTTCCGTCTCTGTCCCTGTTTCTAAGAAAACAAGCAACATGGCTGAGGCTGCAGAGCTACACTATCAACCCAAACCAACCAACACCACAAACCCAACAAGTTCTAGCAACAACCCAACAACACGCTTAAAGCTTTTTGGCTTCAATGTTCAAGACGACGATTTAGAATCTTCCGTACTCGACTCCACCAAGACTTCCACCCCATCTGGTTCACCGGAATCCGGCGGTTTTTCCACCACCGGCGACCGTAAATACGAGTGCCAGTACTGCTGCCGAGAATTCGCCAACTCCCAAGCCCTCGGCGGCCACCAGAACGCGCACAAGAAAGAGCGCCAGCAGCTCAAGCGAGCTCAGCTCCAAGCCAGCCGAAACGCCGCGGTTTCATACGCCCGAAACCCCATCATCTCCGCCTTCGCGCCGCCGCCTCACCTACTGGCCCCGGCCGGTTCGGTGATGGTCCCGGCTGCGGCTCCGGCCAGTCCGTCCTGGGTCTACGTCCCGCGCGCGGCCACACCGTTCCACGTGTCGCATGGATGCGTGTTTCCCGCGGCAGCCAATCACGGGAGGGGTGCAGGGAGTTATTCGTATGGGGGCAGTATAGCAGATTCGACATTGACGTCATCAATGGGGCCCCATCATCAGGTACTTCAACAAGGCCGGGCCCACGGAAGAGCGGATGGGCCATCGTTGAGTAGGTTTACTAAAGGAGATGGTGGGCCCAGTTTTGATGATGCATTGGGCTTGGACTTGCATCTTAGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

294

Amino Acids

31.01

Weight (kDa)

8.58

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 733
AatII GACGTC 1 cut(s) 737
AccBSI CCGCTC 1 cut(s) 791
AccI GTMKAC 1 cut(s) 609
AccII CGCG 7 cut(s) 434, 494, 533, 619, 621, 623, 665
AcoI YGGCCR 4 cut(s) 421, 558, 591, 624
AcsI RAATTY 2 cut(s) 92, 395
AcuI CTGAAG 1 cut(s) 51
AcvI CACGTG 1 cut(s) 640
AcyI GRCGYC 1 cut(s) 734
AfaI GTAC 3 cut(s) 294, 383, 762
AfiI CCNNNNNNNGG 5 cut(s) 338, 583, 622, 678, 757
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 5 cut(s) 87, 92, 262, 269, 767
AjnI CCWGG 1 cut(s) 602
AluBI AGCT 6 cut(s) 71, 175, 250, 457, 467, 472
AluI AGCT 6 cut(s) 71, 175, 250, 457, 467, 472
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 1 cut(s) 130
ApaI GGGCCC 3 cut(s) 750, 781, 837
ApeKI GCWGC 5 cut(s) 167, 387, 454, 581, 668
ApoI RAATTY 2 cut(s) 92, 395
AspLEI GCGC 5 cut(s) 436, 450, 535, 621, 623
AspS9I GGNCC 9 cut(s) 553, 574, 746, 747, 777, 778, 797, 833, 834
AsuC2I CCSGG 3 cut(s) 557, 578, 776
AsuHPI GGTGA 3 cut(s) 321, 536, 580
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 3 cut(s) 750, 781, 837
BanII GRGCYC 4 cut(s) 469, 750, 781, 837
BbrPI CACGTG 1 cut(s) 640
Bbv12I GWGCWC 1 cut(s) 469
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 5 cut(s) 154, 374, 466, 568, 680
BccI CCATC 8 cut(s) 106, 328, 524, 565, 759, 788, 808, 821
BciT130I CCWGG 1 cut(s) 604
BcnI CCSGG 3 cut(s) 557, 578, 776
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 451
BlpI GCTNAGC 1 cut(s) 468
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 4 cut(s) 557, 578, 604, 776
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 9 cut(s) 553, 574, 746, 747, 777, 778, 797, 833, 834
BmiI GGNNCC 8 cut(s) 555, 576, 588, 747, 748, 749, 779, 835
BmrFI CCNGG 4 cut(s) 557, 578, 604, 776
BmrI ACTGGG 1 cut(s) 831
BmsI GCATC 3 cut(s) 641, 838, 877
BmuI ACTGGG 1 cut(s) 831
BplI GAGNNNNNCTC 2 cut(s) 456, 488
Bpu10I CCTNAGC 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 3 cut(s) 557, 578, 776
BsaAI YACGTR 1 cut(s) 640
BsaHI GRCGYC 1 cut(s) 734
BsaJI CCNNGG 6 cut(s) 415, 492, 555, 603, 663, 781
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 5 cut(s) 338, 583, 622, 678, 757
Bse118I RCCGGY 2 cut(s) 356, 560
Bse1I ACTGG 4 cut(s) 379, 555, 594, 837
BseBI CCWGG 1 cut(s) 604
BseDI CCNNGG 6 cut(s) 415, 492, 555, 603, 663, 781
BseGI GGATG 3 cut(s) 18, 656, 799
BseLI CCNNNNNNNGG 5 cut(s) 338, 583, 622, 678, 757
BseMII CTCAG 2 cut(s) 153, 482
BseNI ACTGG 4 cut(s) 379, 555, 594, 837
BsePI GCGCGC 1 cut(s) 619
BseSI GKGCMC 3 cut(s) 750, 781, 837
BseX3I CGGCCG 1 cut(s) 558
BseXI GCAGC 5 cut(s) 154, 374, 466, 568, 680
BsgI GTGCAG 1 cut(s) 708
Bsh1236I CGCG 7 cut(s) 434, 494, 533, 619, 621, 623, 665
Bsh1285I CGRYCG 2 cut(s) 364, 561
BsiEI CGRYCG 2 cut(s) 364, 561
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 8 cut(s) 332, 339, 357, 557, 561, 578, 590, 775
BslFI GGGAC 3 cut(s) 116, 560, 599
BslI CCNNNNNNNGG 5 cut(s) 338, 583, 622, 678, 757
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 3 cut(s) 116, 560, 599
Bsp120I GGGCCC 3 cut(s) 746, 777, 833
Bsp1286I GDGCHC 4 cut(s) 469, 750, 781, 837
Bsp1720I GCTNAGC 1 cut(s) 468
BspCNI CTCAG 2 cut(s) 154, 481
BspFNI CGCG 7 cut(s) 434, 494, 533, 619, 621, 623, 665
BspLI GGNNCC 8 cut(s) 555, 576, 588, 747, 748, 749, 779, 835
BspMAI CTGCAG 1 cut(s) 172
BspQI GCTCTTC 1 cut(s) 781
BsrBI CCGCTC 1 cut(s) 791
BsrFI RCCGGY 2 cut(s) 356, 560
BsrI ACTGG 4 cut(s) 379, 555, 594, 837
BssAI RCCGGY 2 cut(s) 356, 560
BssECI CCNNGG 6 cut(s) 415, 492, 555, 603, 663, 781
BssHII GCGCGC 1 cut(s) 619
BssNI GRCGYC 1 cut(s) 734
Bst2UI CCWGG 1 cut(s) 604
Bst4CI ACNGT 2 cut(s) 365, 633
Bst6I CTCTTC 2 cut(s) 70, 781
BstACI GRCGYC 1 cut(s) 734
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 4 cut(s) 452, 465, 481, 621
BstDEI CTNAG 4 cut(s) 141, 162, 468, 872
BstDSI CCRYGG 3 cut(s) 492, 663, 781
BstF5I GGATG 3 cut(s) 18, 656, 799
BstFNI CGCG 7 cut(s) 434, 494, 533, 619, 621, 623, 665
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 5 cut(s) 436, 450, 535, 621, 623
BstMAI GTCTC 1 cut(s) 130
BstMCI CGRYCG 2 cut(s) 364, 561
BstMWI GCNNNNNNNGC 6 cut(s) 167, 384, 454, 460, 469, 590
BstNI CCWGG 1 cut(s) 604
BstSCI CCNGG 4 cut(s) 555, 576, 602, 774
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 750, 781, 837
BstUI CGCG 7 cut(s) 434, 494, 533, 619, 621, 623, 665
BstV1I GCAGC 5 cut(s) 154, 374, 466, 568, 680
BstZI CGGCCG 1 cut(s) 558
BtgI CCRYGG 3 cut(s) 492, 663, 781
BtsCI GGATG 3 cut(s) 18, 656, 799
Cac8I GCNNGC 4 cut(s) 452, 465, 481, 621
CfoI GCGC 5 cut(s) 436, 450, 535, 621, 623
Cfr10I RCCGGY 2 cut(s) 356, 560
Cfr13I GGNCC 9 cut(s) 553, 574, 746, 747, 777, 778, 797, 833, 834
Cfr42I CCGCGG 2 cut(s) 495, 666
Csp6I GTAC 3 cut(s) 293, 382, 761
CviAII CATG 2 cut(s) 157, 647
CviQI GTAC 3 cut(s) 293, 382, 761
DdeI CTNAG 4 cut(s) 141, 162, 468, 872
DrdI GACNNNNNNGTC 1 cut(s) 733
DseDI GACNNNNNNGTC 1 cut(s) 733
EaeI YGGCCR 4 cut(s) 421, 558, 591, 624
EagI CGGCCG 1 cut(s) 558
Eam1104I CTCTTC 2 cut(s) 70, 781
EarI CTCTTC 2 cut(s) 70, 781
EciI GGCGGA 1 cut(s) 514
Ecl136II GAGCTC 1 cut(s) 467
EclXI CGGCCG 1 cut(s) 558
Eco24I GRGCYC 4 cut(s) 469, 750, 781, 837
Eco47I GGWCC 1 cut(s) 574
Eco52I CGGCCG 1 cut(s) 558
Eco53kI GAGCTC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 51
Eco72I CACGTG 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 467
EcoO109I RGGNCCY 2 cut(s) 746, 747
EcoRI GAATTC 2 cut(s) 92, 395
EcoRII CCWGG 1 cut(s) 602
EcoT22I ATGCAT 1 cut(s) 853
EcoT38I GRGCYC 4 cut(s) 469, 750, 781, 837
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 2 cut(s) 160, 650
FaiI YATR 5 cut(s) 158, 502, 648, 705, 716
FaqI GGGAC 3 cut(s) 116, 560, 599
FatI CATG 2 cut(s) 156, 646
FauI CCCGC 2 cut(s) 624, 670
FblI GTMKAC 1 cut(s) 609
FokI GGATG 3 cut(s) 5, 663, 806
FriOI GRGCYC 4 cut(s) 469, 750, 781, 837
FspBI CTAG 1 cut(s) 222
GlaI GCGC 5 cut(s) 435, 449, 534, 620, 622
HaeII RGCGCY 1 cut(s) 451
HapII CCGG 8 cut(s) 332, 339, 357, 557, 561, 578, 590, 775
HhaI GCGC 5 cut(s) 436, 450, 535, 621, 623
Hin1I GRCGYC 1 cut(s) 734
Hin1II CATG 2 cut(s) 160, 650
Hin6I GCGC 5 cut(s) 434, 448, 533, 619, 621
HinP1I GCGC 5 cut(s) 434, 448, 533, 619, 621
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 4 cut(s) 284, 299, 335, 722
HpaII CCGG 8 cut(s) 332, 339, 357, 557, 561, 578, 590, 775
HphI GGTGA 3 cut(s) 321, 536, 580
Hpy166II GTNNAC 3 cut(s) 329, 610, 816
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 3 cut(s) 329, 610, 816
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 2 cut(s) 365, 633
HpyCH4IV ACGT 3 cut(s) 612, 639, 734
HpyCH4V TGCA 5 cut(s) 4, 170, 689, 851, 868
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 384, 454, 460, 469, 590
HpyF3I CTNAG 4 cut(s) 141, 162, 468, 872
HpySE526I ACGT 3 cut(s) 612, 639, 734
Hsp92I GRCGYC 1 cut(s) 734
Hsp92II CATG 2 cut(s) 160, 650
HspAI GCGC 5 cut(s) 434, 448, 533, 619, 621
KspI CCGCGG 2 cut(s) 495, 666
LguI GCTCTTC 1 cut(s) 781
LmnI GCTCC 3 cut(s) 76, 477, 592
Lsp1109I GCAGC 5 cut(s) 154, 374, 466, 568, 680
LweI GCATC 3 cut(s) 641, 838, 877
MaeI CTAG 1 cut(s) 222
MaeII ACGT 3 cut(s) 612, 639, 734
MauBI CGCGCGCG 1 cut(s) 619
MbiI CCGCTC 1 cut(s) 791
MboII GAAGA 3 cut(s) 57, 279, 798
MfeI CAATTG 1 cut(s) 87
MhlI GDGCHC 4 cut(s) 469, 750, 781, 837
MluCI AATT 3 cut(s) 87, 92, 395
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 5 cut(s) 86, 157, 425, 552, 675
Mph1103I ATGCAT 1 cut(s) 853
MseI TTAA 1 cut(s) 245
MspA1I CMGCKG 2 cut(s) 494, 665
MspI CCGG 8 cut(s) 332, 339, 357, 557, 561, 578, 590, 775
MspR9I CCNGG 4 cut(s) 557, 578, 604, 776
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 604
MvnI CGCG 7 cut(s) 434, 494, 533, 619, 621, 623, 665
MwoI GCNNNNNNNGC 6 cut(s) 167, 384, 454, 460, 469, 590
NciI CCSGG 3 cut(s) 557, 578, 776
NlaIII CATG 2 cut(s) 160, 650
NlaIV GGNNCC 8 cut(s) 555, 576, 588, 747, 748, 749, 779, 835
NmeAIII GCCGAG 2 cut(s) 396, 416
NsiI ATGCAT 1 cut(s) 853
PauI GCGCGC 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 781
PcsI WCGNNNNNNNCGW 1 cut(s) 731
PfeI GAWTC 3 cut(s) 284, 335, 722
PleI GAGTC 1 cut(s) 293
PmaCI CACGTG 1 cut(s) 640
PmlI CACGTG 1 cut(s) 640
PpsI GAGTC 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 640
Psp124BI GAGCTC 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 602
PspCI CACGTG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 602
PspN4I GGNNCC 8 cut(s) 555, 576, 588, 747, 748, 749, 779, 835
PspOMI GGGCCC 3 cut(s) 746, 777, 833
PspPI GGNCC 9 cut(s) 553, 574, 746, 747, 777, 778, 797, 833, 834
PstI CTGCAG 1 cut(s) 172
PteI GCGCGC 1 cut(s) 619
RsaI GTAC 3 cut(s) 294, 383, 762
RsaNI GTAC 3 cut(s) 293, 382, 761
SacI GAGCTC 1 cut(s) 469
SacII CCGCGG 2 cut(s) 495, 666
SapI GCTCTTC 1 cut(s) 781
SaqAI TTAA 1 cut(s) 245
Sau96I GGNCC 9 cut(s) 553, 574, 746, 747, 777, 778, 797, 833, 834
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 4 cut(s) 557, 578, 604, 776
SduI GDGCHC 4 cut(s) 469, 750, 781, 837
SfaNI GCATC 3 cut(s) 641, 838, 877
SfcI CTRYAG 1 cut(s) 168
Sfr303I CCGCGG 2 cut(s) 495, 666
SgrAI CRCCGGYG 1 cut(s) 356
SgrBI CCGCGG 2 cut(s) 495, 666
SinI GGWCC 1 cut(s) 574
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 3 cut(s) 87, 92, 395
SspMI CTAG 1 cut(s) 222
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 4 cut(s) 555, 576, 602, 774
TaaI ACNGT 2 cut(s) 365, 633
TaiI ACGT 3 cut(s) 615, 642, 737
TaqI TCGA 2 cut(s) 297, 725
TasI AATT 3 cut(s) 87, 92, 395
TatI WGTACW 1 cut(s) 381
TauI GCSGC 7 cut(s) 423, 494, 538, 541, 587, 626, 668
TfiI GAWTC 3 cut(s) 284, 335, 722
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TseI GCWGC 5 cut(s) 167, 387, 454, 581, 668
TspDTI ATGAA 2 cut(s) 18, 489
TspGWI ACGGA 4 cut(s) 112, 280, 588, 798
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 2 cut(s) 92, 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 1 cut(s) 222
ZraI GACGTC 1 cut(s) 735
ZrmI AGTACT 1 cut(s) 383
Zsp2I ATGCAT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.