Rh4DG337600

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014004
Physical Location & Seq
Forward (+)
56040043 .. 56041508
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG337600.1

Sequence Viewer

Length: 729 bp
ATGGCAGAGGCTGCAGAAAGAGAGCTCCAATATCAAATCAGACCAATCAATACCTCTAATAATACTAGTAGTGCTGCTACTTCTCCAACCACCACGCGCTTGAAGCTCTTTGGCTTCAATGTCAACCAGCACCAAGACGACGTCGACGAAGCCGTTGTGCTCGACTCCGCCAAGACCACTCCATCCGGATCGCCGGAATCCGGCGGATTTTCCACCGCCGGCGACCGGAAGTACGAGTGCCAGTACTGCTGCCGAGAATTCGCCAACTCTCAAGCGCTCGGCGGCCACCAAAACGCTCACAAGAAGGAGAGGCAGCAGCTCAAGCGGGCCCAGCTCCAGGCCAGCCGAAACGCCGCCGTTTCTTACGCTCGGAACCCCATAATCTCCGCCTTCGCGCCGCCGCACCACCTGCTGGCTCCTCCGGGGTCCGTGATGGTTCCGTCCACGTCTCCGGCGTCCCCGTCGTGGGTTTACGTGCCTCGCGCCGCGACGCCGTTCCAGGTGTCGCACGGCTGCGTGTTTCCAGCGGCGTCGGGTAATGGGAGGGGCGGAGGGAGCTTTGCCTACGGCGGAGGGGAGTCGGCATTGACGATGATGGGGCCGCAAGTGCAGCAGGGCCACCGGGCCCATGGAAGAGCTGACGGGCCATCGTTGAGTAGGTTCACTAAGGGGGATGGTGGGCCCTGTTTGGACGATGGGCTGGGCTTGGACTTGCAACTCAGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

242

Amino Acids

25.51

Weight (kDa)

8.3

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 417
AatII GACGTC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 412
AccI GTMKAC 1 cut(s) 144
AccII CGCG 4 cut(s) 97, 395, 483, 488
AccIII TCCGGA 1 cut(s) 185
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 257
AcyI GRCGYC 4 cut(s) 141, 455, 491, 530
AfaI GTAC 2 cut(s) 233, 245
AfeI AGCGCT 1 cut(s) 276
AfiI CCNNNNNNNGG 6 cut(s) 200, 225, 337, 412, 465, 466
AgsI TTSAA 2 cut(s) 103, 118
AhlI ACTAGT 1 cut(s) 65
AjiI CACGTC 1 cut(s) 447
AjnI CCWGG 2 cut(s) 336, 498
AluBI AGCT 6 cut(s) 25, 106, 319, 334, 558, 638
AluI AGCT 6 cut(s) 25, 106, 319, 334, 558, 638
Alw21I GWGCWC 2 cut(s) 27, 162
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 2 cut(s) 11, 726
Aor13HI TCCGGA 1 cut(s) 185
Aor51HI AGCGCT 1 cut(s) 276
AoxI GGCC 8 cut(s) 283, 327, 339, 599, 616, 624, 644, 680
ApaI GGGCCC 3 cut(s) 331, 628, 684
ApeKI GCWGC 7 cut(s) 11, 74, 249, 313, 316, 513, 610
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 4 cut(s) 99, 277, 397, 485
AsuC2I CCSGG 2 cut(s) 423, 623
AvaII GGWCC 1 cut(s) 426
BaeGI GKGCMC 3 cut(s) 331, 628, 684
BanII GRGCYC 4 cut(s) 27, 331, 628, 684
Bbv12I GWGCWC 2 cut(s) 27, 162
BbvI GCAGC 6 cut(s) 61, 236, 325, 328, 500, 622
BccI CCATC 6 cut(s) 190, 427, 589, 655, 668, 689
BceAI ACGGC 5 cut(s) 137, 341, 478, 526, 583
BciT130I CCWGG 2 cut(s) 338, 500
BcnI CCSGG 2 cut(s) 423, 623
BcoDI GTCTC 1 cut(s) 453
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 417
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 4 cut(s) 338, 423, 500, 623
Bme18I GGWCC 1 cut(s) 426
BmgBI CACGTC 1 cut(s) 447
BmiI GGNNCC 8 cut(s) 329, 374, 417, 427, 438, 600, 626, 682
BmrFI CCNGG 4 cut(s) 338, 423, 500, 623
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 2 cut(s) 255, 305
BpuMI CCSGG 2 cut(s) 423, 623
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 4 cut(s) 141, 455, 491, 530
BsaJI CCNNGG 2 cut(s) 422, 628
BsaWI WCCGGW 2 cut(s) 185, 225
Bsc4I CCNNNNNNNGG 6 cut(s) 200, 225, 337, 412, 465, 466
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 241
BseAI TCCGGA 1 cut(s) 185
BseBI CCWGG 2 cut(s) 338, 500
BseDI CCNNGG 2 cut(s) 422, 628
BseGI GGATG 2 cut(s) 182, 679
BseLI CCNNNNNNNGG 6 cut(s) 200, 225, 337, 412, 465, 466
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 408
BseSI GKGCMC 3 cut(s) 331, 628, 684
BseXI GCAGC 6 cut(s) 61, 236, 325, 328, 500, 622
BseYI CCCAGC 2 cut(s) 330, 700
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 4 cut(s) 97, 395, 483, 488
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 8 cut(s) 285, 329, 341, 601, 618, 626, 646, 682
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 27, 162
BsiSI CCGG 8 cut(s) 186, 194, 201, 219, 226, 422, 452, 622
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 6 cut(s) 200, 225, 337, 412, 465, 466
BsmAI GTCTC 1 cut(s) 453
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 8 cut(s) 285, 329, 341, 601, 618, 626, 646, 682
Bsp120I GGGCCC 3 cut(s) 327, 624, 680
Bsp1286I GDGCHC 5 cut(s) 27, 162, 331, 628, 684
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 1 cut(s) 188
Bsp19I CCATGG 1 cut(s) 628
BspANI GGCC 8 cut(s) 285, 329, 341, 601, 618, 626, 646, 682
BspEI TCCGGA 1 cut(s) 185
BspFNI CGCG 4 cut(s) 97, 395, 483, 488
BspLI GGNNCC 8 cut(s) 329, 374, 417, 427, 438, 600, 626, 682
BspMAI CTGCAG 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 422, 628
BssMI GATC 1 cut(s) 188
BssNI GRCGYC 4 cut(s) 141, 455, 491, 530
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 2 cut(s) 338, 500
Bst6I CTCTTC 1 cut(s) 628
BstACI GRCGYC 4 cut(s) 141, 455, 491, 530
BstAPI GCANNNNNTGC 2 cut(s) 11, 409
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 4 cut(s) 220, 327, 343, 414
BstDEI CTNAG 2 cut(s) 666, 719
BstDSI CCRYGG 1 cut(s) 628
BstF5I GGATG 2 cut(s) 182, 679
BstFNI CGCG 4 cut(s) 97, 395, 483, 488
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 4 cut(s) 99, 277, 397, 485
BstKTI GATC 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 1 cut(s) 188
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 9 cut(s) 11, 103, 246, 322, 331, 409, 555, 607, 610
BstNI CCWGG 2 cut(s) 338, 500
BstSCI CCNGG 4 cut(s) 336, 421, 498, 621
BstSFI CTRYAG 1 cut(s) 12
BstSLI GKGCMC 3 cut(s) 331, 628, 684
BstUI CGCG 4 cut(s) 97, 395, 483, 488
BstV1I GCAGC 6 cut(s) 61, 236, 325, 328, 500, 622
BsuRI GGCC 8 cut(s) 285, 329, 341, 601, 618, 626, 646, 682
BtgI CCRYGG 1 cut(s) 628
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 2 cut(s) 182, 679
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 4 cut(s) 220, 327, 343, 414
CaiI CAGNNNCTG 2 cut(s) 11, 726
CfoI GCGC 4 cut(s) 99, 277, 397, 485
Cfr10I RCCGGY 1 cut(s) 218
CseI GACGC 3 cut(s) 444, 499, 519
Csp6I GTAC 2 cut(s) 232, 244
CviAII CATG 1 cut(s) 629
CviQI GTAC 2 cut(s) 232, 244
DdeI CTNAG 2 cut(s) 666, 719
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 628
EarI CTCTTC 1 cut(s) 628
EciI GGCGGA 5 cut(s) 157, 219, 376, 564, 585
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 628
Eco24I GRGCYC 4 cut(s) 27, 331, 628, 684
Eco47I GGWCC 1 cut(s) 426
Eco47III AGCGCT 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 336, 498
EcoT14I CCWWGG 1 cut(s) 628
EcoT38I GRGCYC 4 cut(s) 27, 331, 628, 684
ErhI CCWWGG 1 cut(s) 628
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 1 cut(s) 632
FaiI YATR 2 cut(s) 380, 630
FaqI GGGAC 1 cut(s) 442
FatI CATG 1 cut(s) 628
FauI CCCGC 1 cut(s) 318
FblI GTMKAC 1 cut(s) 144
FokI GGATG 2 cut(s) 169, 686
FriOI GRGCYC 4 cut(s) 27, 331, 628, 684
FspBI CTAG 1 cut(s) 66
GlaI GCGC 4 cut(s) 98, 276, 396, 484
GsaI CCCAGC 2 cut(s) 334, 704
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 8 cut(s) 285, 329, 341, 601, 618, 626, 646, 682
HapII CCGG 8 cut(s) 186, 194, 201, 219, 226, 422, 452, 622
HgaI GACGC 3 cut(s) 444, 499, 519
HhaI GCGC 4 cut(s) 99, 277, 397, 485
Hin1I GRCGYC 4 cut(s) 141, 455, 491, 530
Hin1II CATG 1 cut(s) 632
Hin6I GCGC 4 cut(s) 97, 275, 395, 483
HinP1I GCGC 4 cut(s) 97, 275, 395, 483
HincII GTYRAC 2 cut(s) 124, 145
HindII GTYRAC 2 cut(s) 124, 145
HinfI GANTC 3 cut(s) 164, 197, 578
HpaII CCGG 8 cut(s) 186, 194, 201, 219, 226, 422, 452, 622
Hpy166II GTNNAC 5 cut(s) 124, 145, 444, 472, 663
Hpy188I TCNGA 3 cut(s) 41, 372, 728
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 5 cut(s) 124, 145, 444, 472, 663
Hpy99I CGWCG 6 cut(s) 143, 146, 149, 466, 493, 535
HpyAV CCTTC 2 cut(s) 298, 400
HpyCH4IV ACGT 3 cut(s) 141, 446, 474
HpyCH4V TGCA 3 cut(s) 14, 610, 715
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 103, 246, 322, 331, 409, 555, 607, 610
HpyF3I CTNAG 2 cut(s) 666, 719
HpySE526I ACGT 3 cut(s) 141, 446, 474
Hsp92I GRCGYC 4 cut(s) 141, 455, 491, 530
Hsp92II CATG 1 cut(s) 632
HspAI GCGC 4 cut(s) 97, 275, 395, 483
Kpn2I TCCGGA 1 cut(s) 185
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 628
LmnI GCTCC 4 cut(s) 30, 339, 421, 555
Lsp1109I GCAGC 6 cut(s) 61, 236, 325, 328, 500, 622
MaeI CTAG 1 cut(s) 66
MaeII ACGT 3 cut(s) 141, 446, 474
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 1 cut(s) 645
MhlI GDGCHC 5 cut(s) 27, 162, 331, 628, 684
MluCI AATT 1 cut(s) 257
MlyI GAGTC 2 cut(s) 158, 587
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 7 cut(s) 64, 303, 429, 489, 537, 545, 566
MreI CGCCGGCG 1 cut(s) 218
MroI TCCGGA 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 8 cut(s) 186, 194, 201, 219, 226, 422, 452, 622
MspR9I CCNGG 4 cut(s) 338, 423, 500, 623
MvaI CCWGG 2 cut(s) 338, 500
MvnI CGCG 4 cut(s) 97, 395, 483, 488
MwoI GCNNNNNNNGC 9 cut(s) 11, 103, 246, 322, 331, 409, 555, 607, 610
NaeI GCCGGC 1 cut(s) 220
NciI CCSGG 2 cut(s) 423, 623
NcoI CCATGG 1 cut(s) 628
NdeII GATC 1 cut(s) 188
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 1 cut(s) 632
NlaIV GGNNCC 8 cut(s) 329, 374, 417, 427, 438, 600, 626, 682
NmeAIII GCCGAG 2 cut(s) 258, 278
PaqCI CACCTGC 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 628
PcsI WCGNNNNNNNCGW 4 cut(s) 144, 150, 452, 587
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 197
PflFI GACNNNGTC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 412
PleI GAGTC 2 cut(s) 158, 586
PpsI GAGTC 2 cut(s) 158, 586
Ppu21I YACGTR 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 336, 498
PspFI CCCAGC 2 cut(s) 330, 700
PspGI CCWGG 2 cut(s) 336, 498
PspN4I GGNNCC 8 cut(s) 329, 374, 417, 427, 438, 600, 626, 682
PspOMI GGGCCC 3 cut(s) 327, 624, 680
PstI CTGCAG 1 cut(s) 16
PstNI CAGNNNCTG 2 cut(s) 11, 726
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 2 cut(s) 233, 245
RsaNI GTAC 2 cut(s) 232, 244
SacI GAGCTC 1 cut(s) 27
SalI GTCGAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 628
Sau3AI GATC 1 cut(s) 188
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 2 cut(s) 158, 587
ScrFI CCNGG 4 cut(s) 338, 423, 500, 623
SduI GDGCHC 5 cut(s) 27, 162, 331, 628, 684
SfcI CTRYAG 1 cut(s) 12
SgrAI CRCCGGYG 1 cut(s) 218
SgrDI CGTCGACG 1 cut(s) 143
SinI GGWCC 1 cut(s) 426
SmlI CTYRAG 2 cut(s) 270, 320
SmoI CTYRAG 2 cut(s) 270, 320
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 257
SspMI CTAG 1 cut(s) 66
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 4 cut(s) 336, 421, 498, 621
StyI CCWWGG 1 cut(s) 628
TaiI ACGT 3 cut(s) 144, 449, 477
TaqI TCGA 2 cut(s) 144, 162
TasI AATT 1 cut(s) 257
TatI WGTACW 1 cut(s) 243
TauI GCSGC 7 cut(s) 285, 356, 400, 403, 488, 530, 604
TfiI GAWTC 1 cut(s) 197
TseI GCWGC 7 cut(s) 11, 74, 249, 313, 316, 513, 610
TspGWI ACGGA 2 cut(s) 418, 429
Tth111I GACNNNGTC 1 cut(s) 140
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 426
XapI RAATTY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 66
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.