MD13G1039200.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014004
Physical Location & Seq
Forward (+)
2665712 .. 2666416
705 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1039200.v1.1.491

Sequence Viewer

Length: 705 bp
ATGGCTGAGGCTGCAGAGCTTCACTATCAACCCAAACCAACCAACAACACAACCACACGCTTAAAACTCTTCGGTTTCAATGTCCAAGAAGACGACGTAGAATCACCCCCCGTACTCGACTCCACCAAGACCGCCACCACCCCTTCCGACTCACCGGAATCCGCCCCATTCTCCACCTCCGGCGACCGTAAATACGAGTGCCAGTACTGCTGCCGAGAATTCGCCAACTCCCAAGCCCTCGGCGGCCACCAGAACGCCCACAAGAAAGAGCGCCAGCAGCTCAAGCGAGCTCAGCTCCAAGCCAGCCGAAACGCTGCGGTCTCCTACGCCAGAAACCCCATCATCTCCGCCTTCACTCCGCCGCCTCACCTCCTCTCCCCGGCCGGATCCCTGATGGTTCCGGCGGCGTCTCCGGCAAATCCGTCGTGGGTTTACGTCCCGCGCACGGCCACCCCGTTCCATGTCTCGCACGGGTGCGTGTTTCCCGCGGCGGCGAATCACGGGAGGGCTGCTGGGAGTTATTCCTACGGTGGCGGTGTAGGGGATTCCGCATTGACGTCAATGGGGCCGTCTCATCACCAGGTACTACAACAAGACCGGGCCCACGTGAGAGCGGATGGGCCGTCGTTGAGTAGGTTCACGAAAGGGGATGGTGGGCCCAGTTTCGATGACGCGTTGGGCTTGGACTTGCATCTCAGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

235

Amino Acids

24.97

Weight (kDa)

7.18

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68360
fragaria_vesca FvH4_4g27020
malus_domestica MD13G1039200.v1.1 MD16G1040100.v1.1
prunus_persica Prupe.1G314000_v2.0.a1
pyrus_communis pycom13g03370 pycom16g03480
rosa_chinensis RchiOBHm_Chr4g0434821
rosa_laevigata RLG00000006645
rosa_multiflora Rmu_sc0000179.1_g000005
rosa_roxburghii Rroxscaffold_5G00376030
rosa_rugosa Rorug04G0279200
rosa_samantha Rh4AG335200 Rh4BG343700 Rh4CG358100 Rh4DG337600
rosa_wichuraiana Rw4G029230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 614
AccII CGCG 3 cut(s) 442, 488, 674
AclWI GGATC 2 cut(s) 381, 394
AcoI YGGCCR 3 cut(s) 244, 381, 447
AcsI RAATTY 1 cut(s) 218
AcvI CACGTG 1 cut(s) 607
AcyI GRCGYC 2 cut(s) 407, 557
AfaI GTAC 3 cut(s) 114, 206, 585
AfiI CCNNNNNNNGG 2 cut(s) 379, 445
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 579
AluBI AGCT 4 cut(s) 19, 280, 290, 295
AluI AGCT 4 cut(s) 19, 280, 290, 295
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 4 cut(s) 325, 414, 469, 576
AlwI GGATC 2 cut(s) 381, 394
AoxI GGCC 7 cut(s) 244, 381, 447, 566, 600, 620, 656
ApaI GGGCCC 2 cut(s) 604, 660
ApeKI GCWGC 5 cut(s) 11, 210, 277, 314, 509
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 2 cut(s) 273, 444
AspS9I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
AsuC2I CCSGG 2 cut(s) 380, 599
AsuHPI GGTGA 4 cut(s) 96, 144, 359, 569
BaeGI GKGCMC 2 cut(s) 604, 660
BamHI GGATCC 1 cut(s) 386
BanII GRGCYC 3 cut(s) 292, 604, 660
BbrPI CACGTG 1 cut(s) 607
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 292
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 197, 289, 301, 496
BccI CCATC 4 cut(s) 347, 388, 611, 644
BceAI ACGGC 3 cut(s) 462, 553, 607
BcgI CGANNNNNNTGC 2 cut(s) 405, 439
BciT130I CCWGG 1 cut(s) 581
BcnI CCSGG 2 cut(s) 380, 599
BcoDI GTCTC 4 cut(s) 325, 414, 469, 576
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 274
BlpI GCTNAGC 1 cut(s) 291
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 3 cut(s) 380, 581, 599
BmgT120I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
BmiI GGNNCC 5 cut(s) 388, 399, 567, 602, 658
BmrFI CCNGG 3 cut(s) 380, 581, 599
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 700
BmuI ACTGGG 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 2 cut(s) 279, 311
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 380, 599
BsaAI YACGTR 1 cut(s) 607
BsaHI GRCGYC 2 cut(s) 407, 557
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 3 cut(s) 238, 378, 486
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 445
Bse1I ACTGG 2 cut(s) 202, 660
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 3 cut(s) 238, 378, 486
BseGI GGATG 2 cut(s) 622, 655
BseLI CCNNNNNNNGG 2 cut(s) 379, 445
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 202, 660
BseRI GAGGAG 1 cut(s) 362
BseSI GKGCMC 2 cut(s) 604, 660
BseX3I CGGCCG 1 cut(s) 381
BseXI GCAGC 4 cut(s) 197, 289, 301, 496
BseYI CCCAGC 1 cut(s) 512
Bsh1236I CGCG 3 cut(s) 442, 488, 674
Bsh1285I CGRYCG 2 cut(s) 187, 384
BshFI GGCC 7 cut(s) 246, 383, 449, 568, 602, 622, 658
BsiEI CGRYCG 2 cut(s) 187, 384
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 7 cut(s) 155, 180, 380, 384, 401, 413, 598
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 379, 445
BsmAI GTCTC 4 cut(s) 325, 414, 469, 576
BsmBI CGTCTC 2 cut(s) 414, 576
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 7 cut(s) 246, 383, 449, 568, 602, 622, 658
Bso31I GGTCTC 1 cut(s) 325
Bsp120I GGGCCC 2 cut(s) 600, 656
Bsp1286I GDGCHC 3 cut(s) 292, 604, 660
Bsp143I GATC 1 cut(s) 386
Bsp1720I GCTNAGC 1 cut(s) 291
BspANI GGCC 7 cut(s) 246, 383, 449, 568, 602, 622, 658
BspCNI CTCAG 1 cut(s) 304
BspFNI CGCG 3 cut(s) 442, 488, 674
BspLI GGNNCC 5 cut(s) 388, 399, 567, 602, 658
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 2 cut(s) 381, 394
BspTNI GGTCTC 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 614
BsrI ACTGG 2 cut(s) 202, 660
BssECI CCNNGG 3 cut(s) 238, 378, 486
BssMI GATC 1 cut(s) 386
BssNI GRCGYC 2 cut(s) 407, 557
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 2 cut(s) 188, 530
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 2 cut(s) 407, 557
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 3 cut(s) 275, 288, 304
BstDEI CTNAG 3 cut(s) 6, 291, 695
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 622, 655
BstFNI CGCG 3 cut(s) 442, 488, 674
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 2 cut(s) 273, 444
BstKTI GATC 1 cut(s) 389
BstMAI GTCTC 4 cut(s) 325, 414, 469, 576
BstMBI GATC 1 cut(s) 386
BstMCI CGRYCG 2 cut(s) 187, 384
BstMWI GCNNNNNNNGC 6 cut(s) 11, 207, 277, 283, 292, 413
BstNI CCWGG 1 cut(s) 581
BstSCI CCNGG 3 cut(s) 378, 579, 597
BstSFI CTRYAG 1 cut(s) 12
BstSLI GKGCMC 2 cut(s) 604, 660
BstUI CGCG 3 cut(s) 442, 488, 674
BstV1I GCAGC 4 cut(s) 197, 289, 301, 496
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BstZI CGGCCG 1 cut(s) 381
BsuRI GGCC 7 cut(s) 246, 383, 449, 568, 602, 622, 658
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 2 cut(s) 622, 655
Cac8I GCNNGC 3 cut(s) 275, 288, 304
CfoI GCGC 2 cut(s) 273, 444
Cfr13I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
Cfr42I CCGCGG 1 cut(s) 489
CseI GACGC 2 cut(s) 396, 680
CsiI ACCWGGT 1 cut(s) 579
Csp6I GTAC 3 cut(s) 113, 205, 584
CviAII CATG 1 cut(s) 461
CviQI GTAC 3 cut(s) 113, 205, 584
DdeI CTNAG 3 cut(s) 6, 291, 695
DpnI GATC 1 cut(s) 388
DpnII GATC 1 cut(s) 386
EaeI YGGCCR 3 cut(s) 244, 381, 447
EagI CGGCCG 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 3 cut(s) 151, 337, 348
Ecl136II GAGCTC 1 cut(s) 290
EclXI CGGCCG 1 cut(s) 381
Eco24I GRGCYC 3 cut(s) 292, 604, 660
Eco31I GGTCTC 1 cut(s) 325
Eco52I CGGCCG 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 290
Eco72I CACGTG 1 cut(s) 607
EcoICRI GAGCTC 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 579
EcoT38I GRGCYC 3 cut(s) 292, 604, 660
Esp3I CGTCTC 2 cut(s) 414, 576
FaeI CATG 1 cut(s) 464
FaiI YATR 1 cut(s) 462
FaqI GGGAC 1 cut(s) 422
FatI CATG 1 cut(s) 460
FauI CCCGC 2 cut(s) 447, 493
FokI GGATG 2 cut(s) 629, 662
FriOI GRGCYC 3 cut(s) 292, 604, 660
GlaI GCGC 2 cut(s) 272, 443
GsaI CCCAGC 1 cut(s) 516
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 7 cut(s) 246, 383, 449, 568, 602, 622, 658
HapII CCGG 7 cut(s) 155, 180, 380, 384, 401, 413, 598
HgaI GACGC 2 cut(s) 396, 680
HhaI GCGC 2 cut(s) 273, 444
Hin1I GRCGYC 2 cut(s) 407, 557
Hin1II CATG 1 cut(s) 464
Hin6I GCGC 2 cut(s) 271, 442
HinP1I GCGC 2 cut(s) 271, 442
HinfI GANTC 6 cut(s) 101, 119, 149, 158, 496, 545
HpaII CCGG 7 cut(s) 155, 180, 380, 384, 401, 413, 598
HphI GGTGA 4 cut(s) 96, 144, 359, 569
Hpy166II GTNNAC 2 cut(s) 433, 639
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 640
Hpy8I GTNNAC 2 cut(s) 433, 639
Hpy99I CGWCG 3 cut(s) 98, 427, 628
HpyAV CCTTC 2 cut(s) 153, 361
HpyCH4III ACNGT 2 cut(s) 188, 530
HpyCH4IV ACGT 4 cut(s) 96, 435, 557, 606
HpyCH4V TGCA 2 cut(s) 14, 691
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 207, 277, 283, 292, 413
HpyF3I CTNAG 3 cut(s) 6, 291, 695
HpySE526I ACGT 4 cut(s) 96, 435, 557, 606
Hsp92I GRCGYC 2 cut(s) 407, 557
Hsp92II CATG 1 cut(s) 464
HspAI GCGC 2 cut(s) 271, 442
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 1 cut(s) 386
LmnI GCTCC 1 cut(s) 300
Lsp1109I GCAGC 4 cut(s) 197, 289, 301, 496
LweI GCATC 1 cut(s) 700
MabI ACCWGGT 1 cut(s) 579
MaeII ACGT 4 cut(s) 96, 435, 557, 606
MalI GATC 1 cut(s) 388
MbiI CCGCTC 1 cut(s) 614
MboI GATC 1 cut(s) 386
MboII GAAGA 2 cut(s) 61, 101
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 3 cut(s) 292, 604, 660
MluCI AATT 1 cut(s) 218
MluI ACGCGT 1 cut(s) 672
MlyI GAGTC 2 cut(s) 113, 143
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 6 cut(s) 187, 248, 375, 380, 383, 498
MseI TTAA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 7 cut(s) 155, 180, 380, 384, 401, 413, 598
MspR9I CCNGG 3 cut(s) 380, 581, 599
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 3 cut(s) 442, 488, 674
MwoI GCNNNNNNNGC 6 cut(s) 11, 207, 277, 283, 292, 413
NciI CCSGG 2 cut(s) 380, 599
NdeII GATC 1 cut(s) 386
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 5 cut(s) 388, 399, 567, 602, 658
NmeAIII GCCGAG 2 cut(s) 219, 239
PcsI WCGNNNNNNNCGW 1 cut(s) 452
PfeI GAWTC 4 cut(s) 101, 158, 496, 545
PleI GAGTC 2 cut(s) 113, 143
PmaCI CACGTG 1 cut(s) 607
PmlI CACGTG 1 cut(s) 607
PpsI GAGTC 2 cut(s) 113, 143
Ppu21I YACGTR 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 579
PspCI CACGTG 1 cut(s) 607
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 5 cut(s) 388, 399, 567, 602, 658
PspOMI GGGCCC 2 cut(s) 600, 656
PspPI GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 3 cut(s) 114, 206, 585
RsaNI GTAC 3 cut(s) 113, 205, 584
SacI GAGCTC 1 cut(s) 292
SacII CCGCGG 1 cut(s) 489
SaqAI TTAA 1 cut(s) 62
Sau3AI GATC 1 cut(s) 386
Sau96I GGNCC 6 cut(s) 566, 600, 601, 620, 656, 657
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 2 cut(s) 113, 143
ScrFI CCNGG 3 cut(s) 380, 581, 599
SduI GDGCHC 3 cut(s) 292, 604, 660
SexAI ACCWGGT 1 cut(s) 579
SfaNI GCATC 1 cut(s) 700
SfcI CTRYAG 1 cut(s) 12
Sfr303I CCGCGG 1 cut(s) 489
SgrBI CCGCGG 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 1 cut(s) 218
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 3 cut(s) 378, 579, 597
TaaI ACNGT 2 cut(s) 188, 530
TaiI ACGT 4 cut(s) 99, 438, 560, 609
TaqI TCGA 2 cut(s) 117, 666
TasI AATT 1 cut(s) 218
TatI WGTACW 1 cut(s) 204
TauI GCSGC 5 cut(s) 246, 364, 407, 491, 494
TfiI GAWTC 4 cut(s) 101, 158, 496, 545
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 5 cut(s) 11, 210, 277, 314, 509
TspGWI ACGGA 1 cut(s) 411
XapI RAATTY 1 cut(s) 218
ZraI GACGTC 1 cut(s) 558
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.