Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013951

Physical Location & Seq

Genomic Coordinates Forward (+)

29251603 .. 29252824

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCTGCTACGTGGCACAATCTCCGCCCCTCTCCCCTCCCTCCGCCGCCTCACCACCACCACCACCACCACCGCCGCCCCGCCTCCAAACTTAACCGTTTCCCGCCATTCTTCCCCAACCAGCAGCAAATACTCCATCTCCGACCAGGACCTCGACTCCCGCGGCTTCCTCCTCCACCGCACCGCCGCCGACCTCAACCTCGACCACCTCAACAAGGTCTTCGTCGCAGTCGGGTTCCCCAAGCGCGACCCGGCCAAGATCCGAATCGCGCTCGACCACACCGACGCCCTCCTCTGGCTCGAGTACGCCAAGACCAACCGCCCCGTCGCCTTCGCCCGCGCCACCGGCGACGGCGTCTTCAACGCCATCATCTGGGACGTCGTGGTGGACCCCTCCTTCCAGGGCATCGGGCTGGGCCGCGCCGTCATGGAGCGGCTGGTGGAGGAGCTCGTGGAGAAAGGGATCGGGAATATCGCTCTGTATTCGGAGCAGCGGGTTCTCGGGTTTTATCGGCCGTTGGGCTTTGTGGCCGACCCGGATGGGATCCGAGGGATGGTGTATTCCAGAAAGCCAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

194

Amino Acids

21.24

Weight (kDa)

9.73

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	88 - 175	3.2e-13	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	93 - 178	3.4e-07	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	103 - 176	1.6e-09	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26220
fragaria_vesca	FvH4_4g28730
malus_domestica	MD13G1053400.v1.1
prunus_persica	Prupe.1G184800_v2.0.a1 Prupe.1G298700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0049111 RchiOBHm_Chr6g0289251
rosa_laevigata	RLG00000006491 RLG00000029657
rosa_multiflora	Rmu_sc0001527.1_g000014 Rmu_ssc0000493.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377920 Rroxscaffold_7G00179650
rosa_rugosa	Rorug04G0296900
rosa_samantha	Rh4DG354100 Rh6DG310300
rosa_wichuraiana	Rw4G030730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccBSI	CCGCTC	1 cut(s)	433
AccII	CGCG	5 cut(s)	162, 246, 269, 339, 420
AclWI	GGATC	4 cut(s)	253, 470, 538, 551
AcoI	YGGCCR	3 cut(s)	252, 512, 528
AcyI	GRCGYC	3 cut(s)	285, 354, 378
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	4 cut(s)	214, 294, 372, 553
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	144, 399
AluBI	AGCT	1 cut(s)	448
AluI	AGCT	1 cut(s)	448
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	4 cut(s)	253, 470, 538, 551
Ama87I	CYCGRG	2 cut(s)	299, 500
AoxI	GGCC	4 cut(s)	252, 415, 512, 528
ApeKI	GCWGC	3 cut(s)	4, 123, 490
AspLEI	GCGC	4 cut(s)	246, 271, 341, 422
AspS9I	GGNCC	3 cut(s)	148, 388, 415
AsuC2I	CCSGG	2 cut(s)	251, 536
AsuHPI	GGTGA	1 cut(s)	43
AvaI	CYCGRG	2 cut(s)	299, 500
AvaII	GGWCC	2 cut(s)	148, 388
BamHI	GGATCC	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	450
BauI	CACGAG	1 cut(s)	449
BbsI	GAAGAC	2 cut(s)	211, 349
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	135, 502
BccI	CCATC	4 cut(s)	143, 374, 533, 547
BceAI	ACGGC	3 cut(s)	367, 407, 499
BciT130I	CCWGG	2 cut(s)	146, 401
BcnI	CCSGG	2 cut(s)	251, 536
BisI	GCNGC	9 cut(s)	5, 46, 75, 124, 163, 186, 418, 434, 491
BlsI	GCNGC	9 cut(s)	6, 47, 76, 125, 164, 187, 419, 435, 492
Bme1390I	CCNGG	4 cut(s)	146, 251, 401, 536
Bme18I	GGWCC	2 cut(s)	148, 388
BmeT110I	CYCGRG	2 cut(s)	299, 500
BmgT120I	GGNCC	3 cut(s)	148, 388, 415
BmiI	GGNNCC	3 cut(s)	236, 390, 545
BmrFI	CCNGG	4 cut(s)	146, 251, 401, 536
BmsI	GCATC	1 cut(s)	414
BpiI	GAAGAC	2 cut(s)	211, 349
BpuMI	CCSGG	2 cut(s)	251, 536
BsaAI	YACGTR	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	263
BsaHI	GRCGYC	3 cut(s)	285, 354, 378
BsaJI	CCNNGG	3 cut(s)	160, 400, 547
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 140, 152, 170
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 294, 372, 553
Bse118I	RCCGGY	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	2 cut(s)	146, 401
BseDI	CCNNGG	3 cut(s)	160, 400, 547
BseGI	GGATG	2 cut(s)	544, 558
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	4 cut(s)	214, 294, 372, 553
BseRI	GAGGAG	3 cut(s)	161, 281, 458
BseX3I	CGGCCG	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	135, 502
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	5 cut(s)	162, 246, 269, 339, 420
Bsh1285I	CGRYCG	1 cut(s)	515
BshFI	GGCC	4 cut(s)	254, 417, 514, 530
BsiEI	CGRYCG	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	2 cut(s)	299, 500
BsiSI	CCGG	3 cut(s)	251, 345, 536
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	4 cut(s)	214, 294, 372, 553
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	4 cut(s)	254, 417, 514, 530
BsoBI	CYCGRG	2 cut(s)	299, 500
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	3 cut(s)	258, 462, 543
BspANI	GGCC	4 cut(s)	254, 417, 514, 530
BspFNI	CGCG	5 cut(s)	162, 246, 269, 339, 420
BspLI	GGNNCC	3 cut(s)	236, 390, 545
BspPI	GGATC	4 cut(s)	253, 470, 538, 551
BsrBI	CCGCTC	1 cut(s)	433
BsrFI	RCCGGY	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	160, 400, 547
BssMI	GATC	3 cut(s)	258, 462, 543
BssNI	GRCGYC	3 cut(s)	285, 354, 378
BssSI	CACGAG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	449
Bst2UI	CCWGG	2 cut(s)	146, 401
Bst4CI	ACNGT	1 cut(s)	97
BstACI	GRCGYC	3 cut(s)	285, 354, 378
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	337
BstDSI	CCRYGG	1 cut(s)	160
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	544, 558
BstFNI	CGCG	5 cut(s)	162, 246, 269, 339, 420
BstHHI	GCGC	4 cut(s)	246, 271, 341, 422
BstKTI	GATC	3 cut(s)	261, 465, 546
BstMBI	GATC	3 cut(s)	258, 462, 543
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	2 cut(s)	146, 401
BstSCI	CCNGG	4 cut(s)	144, 249, 399, 534
BstUI	CGCG	5 cut(s)	162, 246, 269, 339, 420
BstV1I	GCAGC	2 cut(s)	135, 502
BstV2I	GAAGAC	2 cut(s)	211, 349
BstX2I	RGATCY	2 cut(s)	258, 543
BstYI	RGATCY	2 cut(s)	258, 543
BstZI	CGGCCG	1 cut(s)	512
BsuRI	GGCC	4 cut(s)	254, 417, 514, 530
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	544, 558
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	4 cut(s)	246, 271, 341, 422
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	148, 388, 415
Cfr42I	CCGCGG	1 cut(s)	163
CseI	GACGC	2 cut(s)	293, 343
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	427
CviQI	GTAC	1 cut(s)	304
DpnI	GATC	3 cut(s)	260, 464, 545
DpnII	GATC	3 cut(s)	258, 462, 543
EaeI	YGGCCR	3 cut(s)	252, 512, 528
EagI	CGGCCG	1 cut(s)	512
EciI	GGCGGA	2 cut(s)	13, 32
Ecl136II	GAGCTC	1 cut(s)	448
EclXI	CGGCCG	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	148, 388
Eco52I	CGGCCG	1 cut(s)	512
Eco53kI	GAGCTC	1 cut(s)	448
Eco88I	CYCGRG	2 cut(s)	299, 500
EcoICRI	GAGCTC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	144, 399
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	1 cut(s)	430
FaiI	YATR	1 cut(s)	428
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	1 cut(s)	426
FauI	CCCGC	5 cut(s)	87, 110, 167, 344, 486
Fnu4HI	GCNGC	9 cut(s)	5, 46, 75, 124, 163, 186, 418, 434, 491
FokI	GGATG	2 cut(s)	551, 565
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	9 cut(s)	5, 46, 75, 124, 163, 186, 418, 434, 491
GlaI	GCGC	4 cut(s)	245, 270, 340, 421
GluI	GCNGC	9 cut(s)	5, 46, 75, 124, 163, 186, 418, 434, 491
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	254, 417, 514, 530
HapII	CCGG	3 cut(s)	251, 345, 536
HgaI	GACGC	2 cut(s)	293, 343
HhaI	GCGC	4 cut(s)	246, 271, 341, 422
Hin1I	GRCGYC	3 cut(s)	285, 354, 378
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	4 cut(s)	244, 269, 339, 420
HinP1I	GCGC	4 cut(s)	244, 269, 339, 420
HinfI	GANTC	2 cut(s)	155, 264
HpaII	CCGG	3 cut(s)	251, 345, 536
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	4 cut(s)	142, 263, 487, 548
Hpy188III	TCNNGA	2 cut(s)	466, 564
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	5 cut(s)	227, 287, 329, 353, 383
HpyAV	CCTTC	2 cut(s)	340, 406
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	10, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpySE526I	ACGT	2 cut(s)	10, 378
Hsp92I	GRCGYC	3 cut(s)	285, 354, 378
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	4 cut(s)	244, 269, 339, 420
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	258, 462, 543
LmnI	GCTCC	3 cut(s)	430, 445, 487
Lsp1109I	GCAGC	2 cut(s)	135, 502
LweI	GCATC	1 cut(s)	414
MaeII	ACGT	2 cut(s)	10, 378
MalI	GATC	3 cut(s)	260, 464, 545
MbiI	CCGCTC	1 cut(s)	433
MboI	GATC	3 cut(s)	258, 462, 543
MboII	GAAGA	3 cut(s)	102, 211, 349
MflI	RGATCY	2 cut(s)	258, 543
MhlI	GDGCHC	1 cut(s)	450
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	165
MseI	TTAA	1 cut(s)	92
MspA1I	CMGCKG	2 cut(s)	162, 493
MspI	CCGG	3 cut(s)	251, 345, 536
MspR9I	CCNGG	4 cut(s)	146, 251, 401, 536
MvaI	CCWGG	2 cut(s)	146, 401
MvnI	CGCG	5 cut(s)	162, 246, 269, 339, 420
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	2 cut(s)	251, 536
NdeII	GATC	3 cut(s)	258, 462, 543
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	3 cut(s)	236, 390, 545
PaeR7I	CTCGAG	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	372
PkrI	GCNGC	9 cut(s)	6, 47, 76, 125, 164, 187, 419, 435, 492
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	450
Psp5II	RGGWCCY	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	144, 399
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	2 cut(s)	144, 399
PspN4I	GGNNCC	3 cut(s)	236, 390, 545
PspPI	GGNCC	3 cut(s)	148, 388, 415
PspPPI	RGGWCCY	1 cut(s)	148
PspXI	VCTCGAGB	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	258, 543
PsyI	GACNNNGTC	1 cut(s)	353
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SacI	GAGCTC	1 cut(s)	450
SacII	CCGCGG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	9 cut(s)	5, 46, 75, 124, 163, 186, 418, 434, 491
Sau3AI	GATC	3 cut(s)	258, 462, 543
Sau96I	GGNCC	3 cut(s)	148, 388, 415
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	4 cut(s)	146, 251, 401, 536
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	8 cut(s)	13, 153, 195, 201, 210, 219, 381, 450
SfaNI	GCATC	1 cut(s)	414
Sfr274I	CTCGAG	1 cut(s)	299
Sfr303I	CCGCGG	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	344
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	148, 388
SlaI	CTCGAG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	4 cut(s)	144, 249, 399, 534
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	2 cut(s)	13, 381
TaqI	TCGA	4 cut(s)	153, 201, 273, 300
TauI	GCSGC	6 cut(s)	48, 77, 165, 188, 420, 436
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseI	GCWGC	3 cut(s)	4, 123, 490
Tth111I	GACNNNGTC	1 cut(s)	353
Van91I	CCANNNNNTGG	1 cut(s)	372
VpaK11BI	GGWCC	2 cut(s)	148, 388
XagI	CCTNNNNNAGG	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	299
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.