Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013951

Physical Location & Seq

Genomic Coordinates Forward (+)

51147757 .. 51148695

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG310300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAGCAACCCAAATCCCAGAGGTGGTTCTTGAATCGTCCAATGGCCGCAGGATCATGCCTGTGCTTGGCTTCGGCATAGCATCTAACAATTTACAACCAGAGGTTTTTATAGAAGCTATTCTCCAGACCATCAATCTCCGCCTCCAGCCCACCACATCCGCCGCCGCTCAAAACGTCATCGTCTGTGGCATTCCCCAACCAACAAGTACTCGATCTCCAACCAGCCTCGTCTCCAGCGACTTCTTCCTCCACCACACCACAACCGACCTCAACCTTAACCAACTTAACAACGTCTTCGTCGTCGTCGGGTTCCCCAAGCAGGACCCACCCAAGATCCAGATCGCTCTGGAACACACCGACTCAGTTCTCTGGCTCGAGTACGCCAAGACAACTGCTCACTTCTCACATCGTCGTCGTCGTCATCACCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

144

Amino Acids

16.07

Weight (kDa)

9.1

Isoelectric Point (pI)

65.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26220
fragaria_vesca	FvH4_4g28730
malus_domestica	MD13G1053400.v1.1
prunus_persica	Prupe.1G184800_v2.0.a1 Prupe.1G298700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0049111 RchiOBHm_Chr6g0289251
rosa_laevigata	RLG00000006491 RLG00000029657
rosa_multiflora	Rmu_sc0001527.1_g000014 Rmu_ssc0000493.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377920 Rroxscaffold_7G00179650
rosa_rugosa	Rorug04G0296900
rosa_samantha	Rh4DG354100 Rh6DG310300
rosa_wichuraiana	Rw4G030730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	6 cut(s)	49, 142, 162, 165, 168, 430
AclWI	GGATC	2 cut(s)	62, 331
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	2 cut(s)	211, 383
AfiI	CCNNNNNNNGG	3 cut(s)	25, 68, 322
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	62, 331
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	238
BisI	GCNGC	4 cut(s)	6, 49, 165, 168
BlsI	GCNGC	4 cut(s)	7, 50, 166, 169
BmcAI	AGTACT	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	314, 327
BmsI	GCATC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	289
BpmI	CTGGAG	3 cut(s)	110, 131, 220
BsaBI	GATNNNNATC	1 cut(s)	341
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 68, 322
Bse8I	GATNNNNATC	1 cut(s)	341
BseGI	GGATG	1 cut(s)	158
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	25, 68, 322
BseMII	CTCAG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	377
BslI	CCNNNNNNNGG	3 cut(s)	25, 68, 322
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	377
Bsp143I	GATC	4 cut(s)	54, 215, 336, 342
BspACI	CCGC	6 cut(s)	49, 142, 162, 165, 168, 430
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	377
BspLI	GGNNCC	2 cut(s)	314, 327
BspPI	GGATC	2 cut(s)	62, 331
BsrBI	CCGCTC	1 cut(s)	170
BssMI	GATC	4 cut(s)	54, 215, 336, 342
BstDEI	CTNAG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	4 cut(s)	57, 218, 339, 345
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	4 cut(s)	54, 215, 336, 342
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	210, 382
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	6 cut(s)	48, 72, 119, 151, 228, 376
CviKI_1	RGCY	6 cut(s)	48, 72, 119, 151, 228, 376
CviQI	GTAC	2 cut(s)	210, 382
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	4 cut(s)	56, 217, 338, 344
DpnII	GATC	4 cut(s)	54, 215, 336, 342
EaeI	YGGCCR	1 cut(s)	46
EciI	GGCGGA	2 cut(s)	131, 151
Eco47I	GGWCC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	1 cut(s)	61
FaiI	YATR	3 cut(s)	59, 80, 113
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	6, 49, 165, 168
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	6, 49, 165, 168
GluI	GCNGC	4 cut(s)	6, 49, 165, 168
GsuI	CTGGAG	3 cut(s)	110, 131, 220
HaeIII	GGCC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	2 cut(s)	35, 362
HphI	GGTGA	1 cut(s)	419
Hpy188III	TCNNGA	4 cut(s)	32, 127, 340, 350
Hpy99I	CGWCG	6 cut(s)	305, 308, 311, 417, 420, 423
HpyCH4IV	ACGT	2 cut(s)	177, 294
HpyF3I	CTNAG	1 cut(s)	364
HpySE526I	ACGT	2 cut(s)	177, 294
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	54, 215, 336, 342
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	92
MaeII	ACGT	2 cut(s)	177, 294
MalI	GATC	4 cut(s)	56, 217, 338, 344
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	4 cut(s)	54, 215, 336, 342
MboII	GAAGA	2 cut(s)	238, 289
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	6 cut(s)	16, 97, 155, 239, 260, 281
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	2 cut(s)	279, 288
MslI	CAYNNNNRTG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	192
NdeII	GATC	4 cut(s)	54, 215, 336, 342
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	314, 327
PaeR7I	CTCGAG	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	3 cut(s)	237, 300, 418
PctI	GAATGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	4 cut(s)	7, 50, 166, 169
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PpuMI	RGGWCCY	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	314, 327
PspPI	GGNCC	1 cut(s)	325
PspPPI	RGGWCCY	1 cut(s)	325
PspXI	VCTCGAGB	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	2 cut(s)	211, 383
RsaNI	GTAC	2 cut(s)	210, 382
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	279, 288
SatI	GCNGC	4 cut(s)	6, 49, 165, 168
Sau3AI	GATC	4 cut(s)	54, 215, 336, 342
Sau96I	GGNCC	1 cut(s)	325
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	1 cut(s)	356
SetI	ASST	7 cut(s)	27, 108, 121, 180, 273, 279, 297
SfaNI	GCATC	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	325
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	6 cut(s)	49, 142, 162, 165, 168, 430
TaiI	ACGT	2 cut(s)	180, 297
TaqI	TCGA	2 cut(s)	214, 378
TasI	AATT	1 cut(s)	91
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	3 cut(s)	51, 167, 170
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	279, 288
Tru9I	TTAA	2 cut(s)	279, 288
TseI	GCWGC	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	120
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.