RchiOBHm_Chr5g0049111

Non-functional NADPH-dependent codeinone reductase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013951
Physical Location & Seq
Forward (+)
46536711 .. 46537363
653 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32679

Sequence Viewer

Length: 399 bp
ATGCTTGTGCTTGGCTTCGGCACGGTATCCAACAATTTACAACCAGAGTTTTTGATAGAAGCTGTTCTCGAGGCCATCAATCTCCCTCTCCTAACCACTACATCCGACGCTGCTCAACATGTCACCATCTCAAGTACTCGAGCTCCGACCAGCCTCATCTCCCGTGGCTTCTTCGAAGTTCTTCCTCCACCGCACAACCGCCGATCGATCTCAACCTCAACCACCTTAACAATGTCTTCGTCGCCTTCGGGTTACCCAAGCAGGACCCGTCGTCGTCATCACCGCCAAGACTGCTGCTGCTGCTTACGGGTCCGAGCAAGATCTCTTTCCTCGTCGGAAAGAGATCGGAGAGGGGAGGGCAGGTGGGAAGAGAGAGAGAGAACGAGTAATTGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

132

Amino Acids

14.83

Weight (kDa)

9.47

Isoelectric Point (pI)

83.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26220
fragaria_vesca FvH4_4g28730
malus_domestica MD13G1053400.v1.1
prunus_persica Prupe.1G184800_v2.0.a1 Prupe.1G298700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0049111 RchiOBHm_Chr6g0289251
rosa_laevigata RLG00000006491 RLG00000029657
rosa_multiflora Rmu_sc0001527.1_g000014 Rmu_ssc0000493.1_g000003
rosa_roxburghii Rroxscaffold_5G00377920 Rroxscaffold_7G00179650
rosa_rugosa Rorug04G0296900
rosa_samantha Rh4DG354100 Rh6DG310300
rosa_wichuraiana Rw4G030730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 351
Acc36I ACCTGC 1 cut(s) 351
AciI CCGC 3 cut(s) 191, 199, 283
AfaI GTAC 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 118
AhdI GACNNNNNGTC 1 cut(s) 270
AluBI AGCT 2 cut(s) 62, 143
AluI AGCT 2 cut(s) 62, 143
Alw21I GWGCWC 1 cut(s) 145
Ama87I CYCGRG 2 cut(s) 68, 138
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 4 cut(s) 110, 294, 297, 300
Asp700I GAANNNNTTC 2 cut(s) 63, 180
AspS9I GGNCC 2 cut(s) 264, 310
AsuHPI GGTGA 2 cut(s) 115, 272
AsuII TTCGAA 1 cut(s) 174
AvaI CYCGRG 2 cut(s) 68, 138
AvaII GGWCC 2 cut(s) 264, 310
BanII GRGCYC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 4 cut(s) 97, 281, 284, 287
BccI CCATC 2 cut(s) 83, 134
BciVI GTATCC 1 cut(s) 37
BfuAI ACCTGC 1 cut(s) 351
BfuI GTATCC 1 cut(s) 37
BglII AGATCT 1 cut(s) 320
BisI GCNGC 4 cut(s) 111, 295, 298, 301
BlsI GCNGC 4 cut(s) 112, 296, 299, 302
BmcAI AGTACT 1 cut(s) 136
Bme18I GGWCC 2 cut(s) 264, 310
BmeRI GACNNNNNGTC 1 cut(s) 270
BmeT110I CYCGRG 2 cut(s) 68, 138
BmgT120I GGNCC 2 cut(s) 264, 310
BmiI GGNNCC 2 cut(s) 266, 311
BpiI GAAGAC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 163
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 347, 377
BseCI ATCGAT 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 101
BseXI GCAGC 4 cut(s) 97, 281, 284, 287
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 145
BsiHKCI CYCGRG 2 cut(s) 68, 138
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 2 cut(s) 68, 138
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 4 cut(s) 203, 207, 320, 343
BspACI CCGC 3 cut(s) 191, 199, 283
BspANI GGCC 1 cut(s) 74
BspDI ATCGAT 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 266, 311
BspMI ACCTGC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 4 cut(s) 203, 207, 320, 343
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 363
BstBI TTCGAA 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 163
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 1 cut(s) 101
BstKTI GATC 4 cut(s) 206, 210, 323, 346
BstMBI GATC 4 cut(s) 203, 207, 320, 343
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 2 cut(s) 291, 300
BstNSI RCATGY 1 cut(s) 122
BstPI GGTNACC 1 cut(s) 251
BstV1I GCAGC 4 cut(s) 97, 281, 284, 287
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
Bsu15I ATCGAT 1 cut(s) 206
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 101
BveI ACCTGC 1 cut(s) 351
Cfr13I GGNCC 2 cut(s) 264, 310
ClaI ATCGAT 1 cut(s) 206
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 135
CviAII CATG 1 cut(s) 119
CviJI RGCY 6 cut(s) 15, 62, 74, 143, 153, 168
CviKI_1 RGCY 6 cut(s) 15, 62, 74, 143, 153, 168
CviQI GTAC 1 cut(s) 135
DpnI GATC 4 cut(s) 205, 209, 322, 345
DpnII GATC 4 cut(s) 203, 207, 320, 343
DriI GACNNNNNGTC 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 363
Eam1105I GACNNNNNGTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 264, 310
Eco53kI GAGCTC 1 cut(s) 143
Eco88I CYCGRG 2 cut(s) 68, 138
Eco91I GGTNACC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 264
EcoO65I GGTNACC 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 1 cut(s) 122
FaiI YATR 1 cut(s) 120
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 4 cut(s) 111, 295, 298, 301
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 4 cut(s) 111, 295, 298, 301
GluI GCNGC 4 cut(s) 111, 295, 298, 301
HaeIII GGCC 1 cut(s) 74
HgaI GACGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 122
HphI GGTGA 2 cut(s) 115, 272
Hpy188I TCNGA 5 cut(s) 106, 147, 314, 337, 348
Hpy188III TCNNGA 1 cut(s) 68
Hpy99I CGWCG 5 cut(s) 110, 244, 273, 276, 337
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 300
Hsp92II CATG 1 cut(s) 122
Kzo9I GATC 4 cut(s) 203, 207, 320, 343
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 4 cut(s) 57, 163, 247, 346
Lsp1109I GCAGC 4 cut(s) 97, 281, 284, 287
MaeIII GTNAC 2 cut(s) 121, 251
MalI GATC 4 cut(s) 205, 209, 322, 345
MboI GATC 4 cut(s) 203, 207, 320, 343
MboII GAAGA 4 cut(s) 163, 173, 228, 380
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 2 cut(s) 34, 388
MmeI TCCRAC 4 cut(s) 54, 129, 170, 315
MnlI CCTC 8 cut(s) 64, 96, 164, 195, 226, 340, 344, 349
MroXI GAANNNNTTC 2 cut(s) 63, 180
MseI TTAA 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 291, 300
NdeII GATC 4 cut(s) 203, 207, 320, 343
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 266, 311
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 1 cut(s) 174
PaeR7I CTCGAG 2 cut(s) 68, 138
PaqCI CACCTGC 1 cut(s) 351
PciI ACATGT 1 cut(s) 118
PdmI GAANNNNTTC 2 cut(s) 63, 180
PkrI GCNGC 4 cut(s) 112, 296, 299, 302
Ple19I CGATCG 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 264
PscI ACATGT 1 cut(s) 118
Psp124BI GAGCTC 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 264
PspEI GGTNACC 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 266, 311
PspPI GGNCC 2 cut(s) 264, 310
PspPPI RGGWCCY 1 cut(s) 264
PspXI VCTCGAGB 1 cut(s) 138
PsuI RGATCY 1 cut(s) 320
PvuI CGATCG 1 cut(s) 206
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SacI GAGCTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 4 cut(s) 111, 295, 298, 301
Sau3AI GATC 4 cut(s) 203, 207, 320, 343
Sau96I GGNCC 2 cut(s) 264, 310
ScaI AGTACT 1 cut(s) 136
SduI GDGCHC 1 cut(s) 145
SetI ASST 5 cut(s) 64, 145, 218, 227, 365
Sfr274I CTCGAG 2 cut(s) 68, 138
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 2 cut(s) 264, 310
SlaI CTCGAG 2 cut(s) 68, 138
SmlI CTYRAG 3 cut(s) 68, 130, 138
SmoI CTYRAG 3 cut(s) 68, 130, 138
Sse9I AATT 2 cut(s) 34, 388
SsiI CCGC 3 cut(s) 191, 199, 283
SstI GAGCTC 1 cut(s) 145
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 4 cut(s) 69, 139, 174, 206
TasI AATT 2 cut(s) 34, 388
TatI WGTACW 1 cut(s) 134
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 4 cut(s) 110, 294, 297, 300
Tsp45I GTSAC 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 264, 310
XceI RCATGY 1 cut(s) 122
XhoI CTCGAG 2 cut(s) 68, 138
XmnI GAANNNNTTC 2 cut(s) 63, 180
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.