Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013951

Physical Location & Seq

Genomic Coordinates Reverse (-)

19153987 .. 19155203

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCCGCGAGGACCATGCCCGTGCTTGGCTTCGGCACAGCATCCAACAAGTTACAACCAGAGGTTTTGATAGAAGCTGTTCTCCGTGCCATCAATCTCTACCTCCGAACCACCACATCCGCCGCTGCTCAAAACGTCACCGTCCGTGGCATTCCCCAACCAACAAGTACTCGATCTCCGACCAGCCTCGTCTCCCGCGGCTTCTTCCTCCACCGCACCACCGCTTACCTCAACCTCAACCACCTTAACAACGTCTTCGTCGTCGTCGGGTTCCCCAAGCAGGACCCGACCAAGATCCGGATGGCTCCGGAACACACCGAATTAGTTCTCGGCTCAACTCATAAACAATATTCATTACAACTTATTGAAAAAAATGACCTAAACTTGCTGGAAGTCCGGAACCATGTTGAGGAAGGAACCATGAGCTTCGGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

145

Amino Acids

16.07

Weight (kDa)

9.52

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26220
fragaria_vesca	FvH4_4g28730
malus_domestica	MD13G1053400.v1.1
prunus_persica	Prupe.1G184800_v2.0.a1 Prupe.1G298700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0049111 RchiOBHm_Chr6g0289251
rosa_laevigata	RLG00000006491 RLG00000029657
rosa_multiflora	Rmu_sc0001527.1_g000014 Rmu_ssc0000493.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377920 Rroxscaffold_7G00179650
rosa_rugosa	Rorug04G0296900
rosa_samantha	Rh4DG354100 Rh6DG310300
rosa_wichuraiana	Rw4G030730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	8, 198
AccIII	TCCGGA	3 cut(s)	297, 307, 396
AciI	CCGC	7 cut(s)	6, 120, 123, 196, 198, 214, 222
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	4 cut(s)	26, 280, 297, 409
AgsI	TTSAA	1 cut(s)	368
AluBI	AGCT	2 cut(s)	77, 426
AluI	AGCT	2 cut(s)	77, 426
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	289
Aor13HI	TCCGGA	3 cut(s)	297, 307, 396
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	125
Asp700I	GAANNNNTTC	2 cut(s)	78, 324
AspS9I	GGNCC	2 cut(s)	12, 283
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	2 cut(s)	12, 283
BbsI	GAAGAC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	98, 295
BcgI	CGANNNNNNTGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	196
BisI	GCNGC	4 cut(s)	6, 123, 126, 199
BlsI	GCNGC	4 cut(s)	7, 124, 127, 200
BmcAI	AGTACT	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	12, 283
BmgT120I	GGNCC	2 cut(s)	12, 283
BmiI	GGNNCC	5 cut(s)	272, 285, 306, 401, 418
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	145, 196
BsaWI	WCCGGW	3 cut(s)	297, 307, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 280, 297, 409
BseAI	TCCGGA	3 cut(s)	297, 307, 396
BseDI	CCNNGG	2 cut(s)	145, 196
BseGI	GGATG	3 cut(s)	41, 116, 306
BseLI	CCNNNNNNNGG	4 cut(s)	26, 280, 297, 409
BseXI	GCAGC	1 cut(s)	112
Bsh1236I	CGCG	2 cut(s)	8, 198
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	298, 308, 397
BslI	CCNNNNNNNGG	4 cut(s)	26, 280, 297, 409
BsmAI	GTCTC	1 cut(s)	196
BsmBI	CGTCTC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	5
Bsp13I	TCCGGA	3 cut(s)	297, 307, 396
Bsp143I	GATC	2 cut(s)	173, 294
BspACI	CCGC	7 cut(s)	6, 120, 123, 196, 198, 214, 222
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	3 cut(s)	297, 307, 396
BspFNI	CGCG	2 cut(s)	8, 198
BspLI	GGNNCC	5 cut(s)	272, 285, 306, 401, 418
BspPI	GGATC	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	145, 196
BssMI	GATC	2 cut(s)	173, 294
Bst4CI	ACNGT	1 cut(s)	142
BstDSI	CCRYGG	2 cut(s)	145, 196
BstF5I	GGATG	3 cut(s)	41, 116, 306
BstFNI	CGCG	2 cut(s)	8, 198
BstKTI	GATC	2 cut(s)	176, 297
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	173, 294
BstUI	CGCG	2 cut(s)	8, 198
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	145, 196
BtsCI	GGATG	3 cut(s)	41, 116, 306
Cfr13I	GGNCC	2 cut(s)	12, 283
Cfr42I	CCGCGG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	3 cut(s)	16, 404, 421
CviJI	RGCY	8 cut(s)	5, 30, 77, 186, 201, 305, 333, 426
CviKI_1	RGCY	8 cut(s)	5, 30, 77, 186, 201, 305, 333, 426
CviQI	GTAC	1 cut(s)	168
DpnI	GATC	2 cut(s)	175, 296
DpnII	GATC	2 cut(s)	173, 294
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	12, 283
EcoO109I	RGGNCCY	1 cut(s)	283
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	3 cut(s)	19, 407, 424
FaiI	YATR	4 cut(s)	17, 342, 405, 422
FatI	CATG	3 cut(s)	15, 403, 420
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	4 cut(s)	6, 123, 126, 199
FokI	GGATG	3 cut(s)	28, 103, 313
Fsp4HI	GCNGC	4 cut(s)	6, 123, 126, 199
GluI	GCNGC	4 cut(s)	6, 123, 126, 199
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	298, 308, 397
Hin1II	CATG	3 cut(s)	19, 407, 424
HpaII	CCGG	3 cut(s)	298, 308, 397
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	107, 180
Hpy188III	TCNNGA	3 cut(s)	298, 308, 397
Hpy99I	CGWCG	3 cut(s)	263, 266, 269
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	135, 252
HpySE526I	ACGT	2 cut(s)	135, 252
Hsp92II	CATG	3 cut(s)	19, 407, 424
Kpn2I	TCCGGA	3 cut(s)	297, 307, 396
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	173, 294
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	7 cut(s)	72, 196, 266, 311, 321, 374, 410
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	50
MaeII	ACGT	2 cut(s)	135, 252
MaeIII	GTNAC	2 cut(s)	51, 136
MalI	GATC	2 cut(s)	175, 296
MboI	GATC	2 cut(s)	173, 294
MboII	GAAGA	2 cut(s)	196, 247
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	1 cut(s)	320
MmeI	TCCRAC	2 cut(s)	69, 203
MnlI	CCTC	8 cut(s)	3, 55, 113, 197, 218, 239, 245, 403
MroI	TCCGGA	3 cut(s)	297, 307, 396
MroXI	GAANNNNTTC	2 cut(s)	78, 324
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	2 cut(s)	125, 198
MspI	CCGG	3 cut(s)	298, 308, 397
Mva1269I	GAATGC	1 cut(s)	150
MvnI	CGCG	2 cut(s)	8, 198
NdeII	GATC	2 cut(s)	173, 294
NlaIII	CATG	3 cut(s)	19, 407, 424
NlaIV	GGNNCC	5 cut(s)	272, 285, 306, 401, 418
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	1 cut(s)	150
PdmI	GAANNNNTTC	2 cut(s)	78, 324
PkrI	GCNGC	4 cut(s)	7, 124, 127, 200
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
PspN4I	GGNNCC	5 cut(s)	272, 285, 306, 401, 418
PspPI	GGNCC	2 cut(s)	12, 283
PspPPI	RGGWCCY	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	4 cut(s)	6, 123, 126, 199
Sau3AI	GATC	2 cut(s)	173, 294
Sau96I	GGNCC	2 cut(s)	12, 283
ScaI	AGTACT	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	50
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	12, 283
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	7 cut(s)	6, 120, 123, 196, 198, 214, 222
SspI	AATATT	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	138, 255
TaqI	TCGA	1 cut(s)	172
TasI	AATT	1 cut(s)	320
TatI	WGTACW	1 cut(s)	167
TauI	GCSGC	3 cut(s)	8, 125, 201
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	2 cut(s)	74, 134
VpaK11BI	GGWCC	2 cut(s)	12, 283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmnI	GAANNNNTTC	2 cut(s)	78, 324
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.