Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0013951

Physical Location & Seq

Genomic Coordinates Forward (+)

69850 .. 70929

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgctcgccagattctggccaccggagtccgattcttcctccaccgcaccatcgccaatcgacctcaaccttaaccaccttaacaacgtattcgtcgcctgcgggttacccaagcaagacctgtccaagaaccggatcgctctgaaacacactgactcagttctctggctcgagtacgccaagacgagtgctcacttctcacgtcgttgtcgttttcatcaccgccaagactgctgctgcttacgggtccgagcaggatctttttcctcgccagaaagagatcggagaggtgagggcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

100

Amino Acids

11.43

Weight (kDa)

9.01

Isoelectric Point (pI)

70.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26220
fragaria_vesca	FvH4_4g28730
malus_domestica	MD13G1053400.v1.1
prunus_persica	Prupe.1G184800_v2.0.a1 Prupe.1G298700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0049111 RchiOBHm_Chr6g0289251
rosa_laevigata	RLG00000006491 RLG00000029657
rosa_multiflora	Rmu_sc0001527.1_g000014 Rmu_ssc0000493.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377920 Rroxscaffold_7G00179650
rosa_rugosa	Rorug04G0296900
rosa_samantha	Rh4DG354100 Rh6DG310300
rosa_wichuraiana	Rw4G030730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	15
AciI	CCGC	3 cut(s)	45, 102, 223
AclWI	GGATC	2 cut(s)	143, 265
AcoI	YGGCCR	1 cut(s)	17
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	15, 132
AjiI	CACGTC	1 cut(s)	203
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	143, 265
AlwNI	CAGNNNCTG	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	234, 237
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	212, 302
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	221, 224
BccI	CCATC	1 cut(s)	58
BisI	GCNGC	2 cut(s)	235, 238
BlsI	GCNGC	2 cut(s)	236, 239
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	248
BsaWI	WCCGGW	2 cut(s)	22, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 132
BseLI	CCNNNNNNNGG	2 cut(s)	15, 132
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	221, 224
BshFI	GGCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	23, 133
BslI	CCNNNNNNNGG	2 cut(s)	15, 132
BsnI	GGCC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	135, 257, 280
BspACI	CCGC	3 cut(s)	45, 102, 223
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	2 cut(s)	143, 265
BssMI	GATC	3 cut(s)	135, 257, 280
BstC8I	GCNNGC	2 cut(s)	6, 100
BstDEI	CTNAG	1 cut(s)	157
BstEII	GGTNACC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	138, 260, 283
BstMBI	GATC	3 cut(s)	135, 257, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	221, 224
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	36
BtrI	CACGTC	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	6, 100
CaiI	CAGNNNCTG	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	2 cut(s)	19, 169
CviKI_1	RGCY	2 cut(s)	19, 169
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	3 cut(s)	137, 259, 282
DpnII	GATC	3 cut(s)	135, 257, 280
EaeI	YGGCCR	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	105
EcoO65I	GGTNACC	1 cut(s)	105
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	2 cut(s)	235, 238
Fsp4HI	GCNGC	2 cut(s)	235, 238
GluI	GCNGC	2 cut(s)	235, 238
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	2 cut(s)	23, 133
HinfI	GANTC	4 cut(s)	12, 26, 32, 155
HpaII	CCGG	2 cut(s)	23, 133
HphI	GGTGA	2 cut(s)	212, 302
Hpy188I	TCNGA	4 cut(s)	31, 144, 251, 285
Hpy99I	CGWCG	2 cut(s)	98, 207
HpyCH4IV	ACGT	2 cut(s)	87, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	157
HpySE526I	ACGT	2 cut(s)	87, 202
Kzo9I	GATC	3 cut(s)	135, 257, 280
LpnPI	CCDG	8 cut(s)	22, 36, 112, 134, 146, 151, 240, 285
Lsp1109I	GCAGC	2 cut(s)	221, 224
MaeII	ACGT	2 cut(s)	87, 202
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	3 cut(s)	137, 259, 282
MboI	GATC	3 cut(s)	135, 257, 280
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	19
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	35, 149
MnlI	CCTC	5 cut(s)	49, 74, 277, 281, 286
Mox20I	TGGCCA	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	2 cut(s)	72, 81
Msp20I	TGGCCA	1 cut(s)	19
MspI	CCGG	2 cut(s)	23, 133
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	3 cut(s)	135, 257, 280
NlaIV	GGNNCC	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	12, 32
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	236, 239
PleI	GAGTC	2 cut(s)	34, 149
PpsI	GAGTC	2 cut(s)	34, 149
PspEI	GGTNACC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	247
PspXI	VCTCGAGB	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	72, 81
SatI	GCNGC	2 cut(s)	235, 238
Sau3AI	GATC	3 cut(s)	135, 257, 280
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	2 cut(s)	35, 149
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	7 cut(s)	66, 72, 81, 90, 123, 205, 292
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	247
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	3 cut(s)	45, 102, 223
TaiI	ACGT	2 cut(s)	90, 205
TaqI	TCGA	2 cut(s)	60, 171
TfiI	GAWTC	2 cut(s)	12, 32
Tru1I	TTAA	2 cut(s)	72, 81
Tru9I	TTAA	2 cut(s)	72, 81
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	2 cut(s)	234, 237
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	247
XhoI	CTCGAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.