Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013951

Physical Location & Seq

Genomic Coordinates Forward (+)

3774320 .. 3774898

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1053400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATCTTACGTGGCACTATCTCCGCTCCCCTCCCCTGTCTCCGCCTCAGAAGCACCGGCGCCGCTCCCACTCCCCCGCAAAGCCTCACCCCGTCGCGCCGCTCCCTAACTACCAACCAATACTCAATCTCCGACCAAGACCTCGACACCCGGGGCTTCAACCTCCACCGCACGATCGCGGAGCTCAACCTGGACCACCTCAACAAGGTGTTCGTGGCCGTCGGGTTTCCGAAGCGGGACCCGGACAAGATCCGGACGGCGCTGGAGCACACGGACTCGCTGCTGTGGATGGAGTACAGGAAGACGAAGCGGCCGGTGGCGTTCGCGAGGGCGACGGGAGACGGCGTGTTCAACGCGATCATATGGGACGTGGTGGTGGACCCGTCGTTTCAGGGGCTGGGGCTGGGGAAGGCGGTGATGGAGAGGTTGATAGAGGAGCTGGTAGGGAAAGGGATATGTAATATTGCTTTGTATTCGGAACCCAGGGTTCTCGGGTTTTACAGGCCGTTGGGTTTTGTGGCGGATCCGGATGGGATCCGGGGAATGGTGTATTCAAGAAAGCCCAAAAGAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

193

Amino Acids

21.45

Weight (kDa)

9.89

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	76 - 172	2e-13	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	80 - 175	3.8e-07	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	100 - 173	1.7e-09	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26220
fragaria_vesca	FvH4_4g28730
malus_domestica	MD13G1053400.v1.1
prunus_persica	Prupe.1G184800_v2.0.a1 Prupe.1G298700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0049111 RchiOBHm_Chr6g0289251
rosa_laevigata	RLG00000006491 RLG00000029657
rosa_multiflora	Rmu_sc0001527.1_g000014 Rmu_ssc0000493.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377920 Rroxscaffold_7G00179650
rosa_rugosa	Rorug04G0296900
rosa_samantha	Rh4DG354100 Rh6DG310300
rosa_wichuraiana	Rw4G030730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccBSI	CCGCTC	3 cut(s)	26, 65, 102
AccII	CGCG	4 cut(s)	97, 179, 326, 356
AccIII	TCCGGA	2 cut(s)	252, 526
AclWI	GGATC	5 cut(s)	244, 518, 529, 531, 542
AcoI	YGGCCR	2 cut(s)	216, 311
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	205, 544
AgsI	TTSAA	3 cut(s)	160, 352, 555
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	189, 482
AluBI	AGCT	2 cut(s)	184, 439
AluI	AGCT	2 cut(s)	184, 439
Alw21I	GWGCWC	2 cut(s)	186, 270
Alw26I	GTCTC	2 cut(s)	44, 333
AlwI	GGATC	5 cut(s)	244, 518, 529, 531, 542
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	2 cut(s)	150, 491
Aor13HI	TCCGGA	2 cut(s)	252, 526
AoxI	GGCC	3 cut(s)	216, 311, 503
ApeKI	GCWGC	1 cut(s)	280
AspLEI	GCGC	3 cut(s)	62, 99, 262
AspS9I	GGNCC	3 cut(s)	193, 238, 379
AsuC2I	CCSGG	4 cut(s)	151, 152, 242, 539
AsuHPI	GGTGA	2 cut(s)	79, 427
AvaI	CYCGRG	2 cut(s)	150, 491
AvaII	GGWCC	3 cut(s)	193, 238, 379
BamHI	GGATCC	2 cut(s)	523, 534
BanI	GGYRCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	186, 270
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	3 cut(s)	283, 412, 524
BceAI	ACGGC	4 cut(s)	203, 273, 358, 490
BciT130I	CCWGG	2 cut(s)	191, 484
BcnI	CCSGG	4 cut(s)	151, 152, 242, 539
BcoDI	GTCTC	2 cut(s)	44, 333
BfoI	RGCGCY	2 cut(s)	63, 263
BisI	GCNGC	4 cut(s)	63, 100, 281, 311
BlsI	GCNGC	4 cut(s)	64, 101, 282, 312
Bme1390I	CCNGG	6 cut(s)	151, 152, 191, 242, 484, 539
Bme18I	GGWCC	3 cut(s)	193, 238, 379
BmeT110I	CYCGRG	2 cut(s)	150, 491
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	3 cut(s)	193, 238, 379
BmiI	GGNNCC	7 cut(s)	61, 239, 240, 381, 480, 525, 536
BmrFI	CCNGG	6 cut(s)	151, 152, 191, 242, 484, 539
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	284
BpuMI	CCSGG	4 cut(s)	151, 152, 242, 539
BsaAI	YACGTR	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	5 cut(s)	150, 151, 482, 483, 538
BsaWI	WCCGGW	2 cut(s)	252, 526
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 330, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 544
Bse118I	RCCGGY	2 cut(s)	56, 313
BseAI	TCCGGA	2 cut(s)	252, 526
BseBI	CCWGG	2 cut(s)	191, 484
BseDI	CCNNGG	5 cut(s)	150, 151, 482, 483, 538
BseGI	GGATG	2 cut(s)	294, 535
BseLI	CCNNNNNNNGG	2 cut(s)	205, 544
BseMII	CTCAG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	449
BseX3I	CGGCCG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	267
BseYI	CCCAGC	2 cut(s)	397, 403
Bsh1236I	CGCG	4 cut(s)	97, 179, 326, 356
Bsh1285I	CGRYCG	2 cut(s)	177, 314
BshFI	GGCC	3 cut(s)	218, 313, 505
BshNI	GGYRCC	1 cut(s)	59
BsiEI	CGRYCG	2 cut(s)	177, 314
BsiHKAI	GWGCWC	2 cut(s)	186, 270
BsiHKCI	CYCGRG	2 cut(s)	150, 491
BsiSI	CCGG	7 cut(s)	57, 151, 242, 253, 314, 527, 538
BslFI	GGGAC	2 cut(s)	251, 380
BslI	CCNNNNNNNGG	2 cut(s)	205, 544
BsmAI	GTCTC	2 cut(s)	44, 333
BsmBI	CGTCTC	1 cut(s)	333
BsmFI	GGGAC	2 cut(s)	251, 380
BsnI	GGCC	3 cut(s)	218, 313, 505
BsoBI	CYCGRG	2 cut(s)	150, 491
Bsp1286I	GDGCHC	2 cut(s)	186, 270
Bsp13I	TCCGGA	2 cut(s)	252, 526
Bsp143I	GATC	6 cut(s)	3, 174, 249, 357, 523, 534
Bsp68I	TCGCGA	1 cut(s)	326
BspANI	GGCC	3 cut(s)	218, 313, 505
BspCNI	CTCAG	1 cut(s)	60
BspEI	TCCGGA	2 cut(s)	252, 526
BspFNI	CGCG	4 cut(s)	97, 179, 326, 356
BspLI	GGNNCC	7 cut(s)	61, 239, 240, 381, 480, 525, 536
BspPI	GGATC	5 cut(s)	244, 518, 529, 531, 542
BspT107I	GGYRCC	1 cut(s)	59
BsrBI	CCGCTC	3 cut(s)	26, 65, 102
BsrFI	RCCGGY	2 cut(s)	56, 313
BssAI	RCCGGY	2 cut(s)	56, 313
BssECI	CCNNGG	5 cut(s)	150, 151, 482, 483, 538
BssMI	GATC	6 cut(s)	3, 174, 249, 357, 523, 534
BssNI	GRCGYC	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	191, 484
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	47
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	294, 535
BstFNI	CGCG	4 cut(s)	97, 179, 326, 356
BstH2I	RGCGCY	2 cut(s)	63, 263
BstHHI	GCGC	3 cut(s)	62, 99, 262
BstKTI	GATC	6 cut(s)	6, 177, 252, 360, 526, 537
BstMAI	GTCTC	2 cut(s)	44, 333
BstMBI	GATC	6 cut(s)	3, 174, 249, 357, 523, 534
BstMCI	CGRYCG	2 cut(s)	177, 314
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	2 cut(s)	191, 484
BstSCI	CCNGG	6 cut(s)	149, 150, 189, 240, 482, 537
BstUI	CGCG	4 cut(s)	97, 179, 326, 356
BstV1I	GCAGC	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	3 cut(s)	249, 523, 534
BstYI	RGATCY	3 cut(s)	249, 523, 534
BstZI	CGGCCG	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	218, 313, 505
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	294, 535
BtuMI	TCGCGA	1 cut(s)	326
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	3 cut(s)	62, 99, 262
Cfr10I	RCCGGY	2 cut(s)	56, 313
Cfr13I	GGNCC	3 cut(s)	193, 238, 379
Cfr9I	CCCGGG	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	576
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	47
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	6 cut(s)	5, 176, 251, 359, 525, 536
DpnII	GATC	6 cut(s)	3, 174, 249, 357, 523, 534
EaeI	YGGCCR	2 cut(s)	216, 311
EagI	CGGCCG	1 cut(s)	311
EciI	GGCGGA	2 cut(s)	32, 536
Ecl136II	GAGCTC	1 cut(s)	184
EclXI	CGGCCG	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	3 cut(s)	193, 238, 379
Eco52I	CGGCCG	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	184
Eco88I	CYCGRG	2 cut(s)	150, 491
EcoICRI	GAGCTC	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	189, 482
EcoT38I	GRGCYC	1 cut(s)	186
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	1 cut(s)	579
FaiI	YATR	4 cut(s)	362, 364, 457, 577
FaqI	GGGAC	2 cut(s)	251, 380
FatI	CATG	1 cut(s)	575
FauI	CCCGC	2 cut(s)	84, 228
FauNDI	CATATG	1 cut(s)	362
Fnu4HI	GCNGC	4 cut(s)	63, 100, 281, 311
FokI	GGATG	2 cut(s)	301, 542
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	4 cut(s)	63, 100, 281, 311
GlaI	GCGC	3 cut(s)	61, 98, 261
GluI	GCNGC	4 cut(s)	63, 100, 281, 311
GsaI	CCCAGC	2 cut(s)	401, 407
GsuI	CTGGAG	1 cut(s)	284
HaeII	RGCGCY	2 cut(s)	63, 263
HaeIII	GGCC	3 cut(s)	218, 313, 505
HapII	CCGG	7 cut(s)	57, 151, 242, 253, 314, 527, 538
HhaI	GCGC	3 cut(s)	62, 99, 262
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	579
Hin6I	GCGC	3 cut(s)	60, 97, 260
HinP1I	GCGC	3 cut(s)	60, 97, 260
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	7 cut(s)	57, 151, 242, 253, 314, 527, 538
HphI	GGTGA	2 cut(s)	79, 427
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	4 cut(s)	50, 133, 231, 478
Hpy188III	TCNNGA	4 cut(s)	253, 325, 527, 555
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	4 cut(s)	97, 224, 337, 388
HpyAV	CCTTC	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	10, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	10, 369
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	579
HspAI	GCGC	3 cut(s)	60, 97, 260
KasI	GGCGCC	1 cut(s)	59
KflI	GGGWCCC	1 cut(s)	238
Kpn2I	TCCGGA	2 cut(s)	252, 526
Kzo9I	GATC	6 cut(s)	3, 174, 249, 357, 523, 534
LmnI	GCTCC	6 cut(s)	31, 70, 107, 181, 265, 436
Lsp1109I	GCAGC	1 cut(s)	267
MaeII	ACGT	2 cut(s)	10, 369
MalI	GATC	6 cut(s)	5, 176, 251, 359, 525, 536
MbiI	CCGCTC	3 cut(s)	26, 65, 102
MboI	GATC	6 cut(s)	3, 174, 249, 357, 523, 534
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	3 cut(s)	249, 523, 534
MhlI	GDGCHC	2 cut(s)	186, 270
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	9 cut(s)	41, 56, 95, 152, 173, 209, 321, 417, 427
MroI	TCCGGA	2 cut(s)	252, 526
MspI	CCGG	7 cut(s)	57, 151, 242, 253, 314, 527, 538
MspR9I	CCNGG	6 cut(s)	151, 152, 191, 242, 484, 539
MvaI	CCWGG	2 cut(s)	191, 484
MvnI	CGCG	4 cut(s)	97, 179, 326, 356
MwoI	GCNNNNNNNGC	1 cut(s)	51
NarI	GGCGCC	1 cut(s)	60
NciI	CCSGG	4 cut(s)	151, 152, 242, 539
NdeI	CATATG	1 cut(s)	362
NdeII	GATC	6 cut(s)	3, 174, 249, 357, 523, 534
NlaIII	CATG	1 cut(s)	579
NlaIV	GGNNCC	7 cut(s)	61, 239, 240, 381, 480, 525, 536
NruI	TCGCGA	1 cut(s)	326
PasI	CCCWGGG	1 cut(s)	483
PkrI	GCNGC	4 cut(s)	64, 101, 282, 312
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	1 cut(s)	269
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	269
Ppu21I	YACGTR	1 cut(s)	11
PpuMI	RGGWCCY	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	189, 482
PspFI	CCCAGC	2 cut(s)	397, 403
PspGI	CCWGG	2 cut(s)	189, 482
PspN4I	GGNNCC	7 cut(s)	61, 239, 240, 381, 480, 525, 536
PspPI	GGNCC	3 cut(s)	193, 238, 379
PspPPI	RGGWCCY	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	3 cut(s)	249, 523, 534
PvuI	CGATCG	1 cut(s)	177
RruI	TCGCGA	1 cut(s)	326
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	186
SatI	GCNGC	4 cut(s)	63, 100, 281, 311
Sau3AI	GATC	6 cut(s)	3, 174, 249, 357, 523, 534
Sau96I	GGNCC	3 cut(s)	193, 238, 379
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	6 cut(s)	151, 152, 191, 242, 484, 539
SduI	GDGCHC	2 cut(s)	186, 270
SfoI	GGCGCC	1 cut(s)	61
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	3 cut(s)	193, 238, 379
SmaI	CCCGGG	1 cut(s)	152
SspDI	GGCGCC	1 cut(s)	59
SspI	AATATT	1 cut(s)	463
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	6 cut(s)	149, 150, 189, 240, 482, 537
TaiI	ACGT	2 cut(s)	13, 372
TaqI	TCGA	1 cut(s)	144
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	3 cut(s)	65, 102, 313
TseI	GCWGC	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	287
TspMI	CCCGGG	1 cut(s)	150
VpaK11BI	GGWCC	3 cut(s)	193, 238, 379
XagI	CCTNNNNNAGG	1 cut(s)	203
XmaI	CCCGGG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.