RchiOBHm_Chr6g0289251

Non-functional NADPH-dependent codeinone reductase 2-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
52374820 .. 52375553
734 bp
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UTR
Exon/CDS
Intron
PRQ25948

Sequence Viewer

Length: 219 bp
ATGCATGTGCTTGGCTTCGGCACGGCATCCAACAATTTACAACCAGAGGTTTTGATAGAAGCTGTTCTTGAGGCCATCAATCTCCGCATCCGAACCACTACATCCGATGCCGCTCAAAACCTCGCCGTCTCAAGTACTCAATCTCCGACCAGCCTAGTCTCCTGTGGCTTCTTCCTCCACTGCACCATCGCCGATCGACCTCAACCTCAACCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

7.68

Weight (kDa)

5.38

Isoelectric Point (pI)

71.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013951)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 113
AciI CCGC 2 cut(s) 85, 111
AfaI GTAC 1 cut(s) 136
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 133, 163
AoxI GGCC 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 63
BccI CCATC 2 cut(s) 83, 194
BceAI ACGGC 2 cut(s) 39, 110
BcoDI GTCTC 2 cut(s) 133, 163
BfaI CTAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmcAI AGTACT 1 cut(s) 136
BmsI GCATC 3 cut(s) 35, 96, 97
BpuEI CTTGAG 2 cut(s) 89, 115
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
BseGI GGATG 3 cut(s) 26, 87, 101
BsgI GTGCAG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 133, 163
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 85, 111
BspANI GGCC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 113
BssMI GATC 1 cut(s) 193
BstF5I GGATG 3 cut(s) 26, 87, 101
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 2 cut(s) 133, 163
BstMBI GATC 1 cut(s) 193
BstMCI CGRYCG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 8
BsuRI GGCC 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 26, 87, 101
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
Csp6I GTAC 1 cut(s) 135
CviAII CATG 1 cut(s) 5
CviJI RGCY 5 cut(s) 15, 62, 74, 153, 168
CviKI_1 RGCY 5 cut(s) 15, 62, 74, 153, 168
CviQI GTAC 1 cut(s) 135
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 1 cut(s) 8
FaiI YATR 1 cut(s) 6
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 3 cut(s) 13, 74, 88
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 74
Hin1II CATG 1 cut(s) 8
Hpy188I TCNGA 3 cut(s) 92, 106, 147
Hpy188III TCNNGA 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 4, 183
Hsp92II CATG 1 cut(s) 8
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 57, 163, 175
LweI GCATC 3 cut(s) 35, 96, 97
MaeI CTAG 1 cut(s) 155
MalI GATC 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 113
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 163
MluCI AATT 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 54, 170
MnlI CCTC 6 cut(s) 40, 64, 131, 185, 210, 216
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 217
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 63
PkrI GCNGC 1 cut(s) 112
Ple19I CGATCG 1 cut(s) 196
PvuI CGATCG 1 cut(s) 196
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 217
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 136
SetI ASST 6 cut(s) 51, 64, 123, 202, 208, 217
SfaNI GCATC 3 cut(s) 35, 96, 97
SmlI CTYRAG 2 cut(s) 68, 130
SmoI CTYRAG 2 cut(s) 68, 130
Sse9I AATT 1 cut(s) 34
SsiI CCGC 2 cut(s) 85, 111
SspMI CTAG 1 cut(s) 155
TaqI TCGA 1 cut(s) 196
TasI AATT 1 cut(s) 34
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 217
Tru9I TTAA 1 cut(s) 217
TscAI CASTG 1 cut(s) 185
TspRI CASTG 1 cut(s) 185
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 155
ZrmI AGTACT 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.