Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013951

Physical Location & Seq

Genomic Coordinates Forward (+)

57516785 .. 57516946

Gene Structure 162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG354100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGAGCGCCTCGTGGAGGAGCTCGTCGATAAGGGCATCGGGAATATCGCTTTGTATTCGGAGCCCCGGGTTCTCGGGTTTTATCGGCCCTTGGGCTTTGTGGCCGACCCGGATGGGATCCGCGGAATGGTGTATTCCAGAAAGCCCAAGAAGCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004059 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010817 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0018130 GO:0019438 GO:0030186 GO:0030187 GO:0034641 GO:0034754 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00380 map00380

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

53

Amino Acids

6.04

Weight (kDa)

9.52

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26220
fragaria_vesca	FvH4_4g28730
malus_domestica	MD13G1053400.v1.1
prunus_persica	Prupe.1G184800_v2.0.a1 Prupe.1G298700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0049111 RchiOBHm_Chr6g0289251
rosa_laevigata	RLG00000006491 RLG00000029657
rosa_multiflora	Rmu_sc0001527.1_g000014 Rmu_ssc0000493.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377920 Rroxscaffold_7G00179650
rosa_rugosa	Rorug04G0296900
rosa_samantha	Rh4DG354100 Rh6DG310300
rosa_wichuraiana	Rw4G030730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	121, 123
AclWI	GGATC	2 cut(s)	112, 125
AcoI	YGGCCR	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	16, 127
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	112, 125
Ama87I	CYCGRG	2 cut(s)	66, 74
AoxI	GGCC	2 cut(s)	86, 102
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	3 cut(s)	67, 68, 110
AvaI	CYCGRG	2 cut(s)	66, 74
BamHI	GGATCC	1 cut(s)	117
BanII	GRGCYC	2 cut(s)	24, 66
BauI	CACGAG	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	1 cut(s)	107
BcnI	CCSGG	3 cut(s)	67, 68, 110
BfoI	RGCGCY	1 cut(s)	10
Bme1390I	CCNGG	3 cut(s)	67, 68, 110
BmeT110I	CYCGRG	2 cut(s)	66, 74
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	63, 119
BmrFI	CCNGG	3 cut(s)	67, 68, 110
BmsI	GCATC	1 cut(s)	45
BpuMI	CCSGG	3 cut(s)	67, 68, 110
BsaJI	CCNNGG	4 cut(s)	65, 66, 90, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 127
BseDI	CCNNGG	4 cut(s)	65, 66, 90, 121
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	16, 127
BseRI	GAGGAG	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	88, 104
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	2 cut(s)	66, 74
BsiSI	CCGG	2 cut(s)	67, 110
BslI	CCNNNNNNNGG	2 cut(s)	16, 127
BsnI	GGCC	2 cut(s)	88, 104
BsoBI	CYCGRG	2 cut(s)	66, 74
Bsp1286I	GDGCHC	2 cut(s)	24, 66
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	121, 123
BspANI	GGCC	2 cut(s)	88, 104
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	63, 119
BspPI	GGATC	2 cut(s)	112, 125
BssECI	CCNNGG	4 cut(s)	65, 66, 90, 121
BssMI	GATC	1 cut(s)	117
BssSI	CACGAG	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	121
BstENI	CCTNNNNNAGG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	65, 66, 108
BstUI	CGCG	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	88, 104
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	118
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	87
Cfr42I	CCGCGG	1 cut(s)	124
Cfr9I	CCCGGG	1 cut(s)	66
CviJI	RGCY	6 cut(s)	22, 64, 88, 96, 104, 145
CviKI_1	RGCY	6 cut(s)	22, 64, 88, 96, 104, 145
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	2 cut(s)	24, 66
Eco53kI	GAGCTC	1 cut(s)	22
Eco88I	CYCGRG	2 cut(s)	66, 74
EcoICRI	GAGCTC	1 cut(s)	22
EcoNI	CCTNNNNNAGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	24, 66
ErhI	CCWWGG	1 cut(s)	90
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	2 cut(s)	24, 66
GlaI	GCGC	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	88, 104
HapII	CCGG	2 cut(s)	67, 110
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	67, 110
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	40, 138
Hpy99I	CGWCG	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HspAI	GCGC	1 cut(s)	7
KspI	CCGCGG	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	4, 19, 61
LpnPI	CCDG	3 cut(s)	80, 123, 151
LweI	GCATC	1 cut(s)	45
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	24, 66
MnlI	CCTC	2 cut(s)	10, 20
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	2 cut(s)	67, 110
MspR9I	CCNGG	3 cut(s)	67, 68, 110
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	3 cut(s)	67, 68, 110
NdeII	GATC	1 cut(s)	117
NlaIV	GGNNCC	2 cut(s)	63, 119
Psp124BI	GAGCTC	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	63, 119
PspPI	GGNCC	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	24
SacII	CCGCGG	1 cut(s)	124
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	87
ScrFI	CCNGG	3 cut(s)	67, 68, 110
SduI	GDGCHC	2 cut(s)	24, 66
SetI	ASST	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	45
Sfr303I	CCGCGG	1 cut(s)	124
SgrBI	CCGCGG	1 cut(s)	124
SmaI	CCCGGG	1 cut(s)	68
SsiI	CCGC	2 cut(s)	121, 123
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	3 cut(s)	65, 66, 108
StyI	CCWWGG	1 cut(s)	90
TaqI	TCGA	1 cut(s)	27
TspMI	CCCGGG	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	14
XmaI	CCCGGG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.