U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68940 AT1G68940 AT1G68940 |
| fragaria_vesca | FvH4_4g28940 |
| malus_domestica | MD13G1055000.v1.1 |
| prunus_persica | Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1 Prupe.1G295900_v2.0.a1 |
| pyrus_communis | pycom16g04680 |
| rosa_chinensis | RchiOBHm_Chr4g0437081 |
| rosa_laevigata | RLG00000006470 |
| rosa_multiflora | Rmu_ssc0000006.1_g000011 |
| rosa_roxburghii | Rroxscaffold_5G00378160 |
| rosa_rugosa | Rorug04G0298000 |
| rosa_samantha | Rh4AG352700 Rh4BG362000 Rh4CG376300 Rh4DG356200 |
| rosa_wichuraiana | Rw4G030880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 982 |
| Acc36I | ACCTGC | 2 cut(s) | 1526, 2337 |
| Acc65I | GGTACC | 1 cut(s) | 103 |
| AccB1I | GGYRCC | 1 cut(s) | 103 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 875 |
| AccII | CGCG | 1 cut(s) | 1649 |
| AccIII | TCCGGA | 1 cut(s) | 1749 |
| AciI | CCGC | 5 cut(s) | 617, 1649, 2190, 2899, 2943 |
| AclWI | GGATC | 9 cut(s) | 302, 315, 567, 659, 691, 767, 780, 1339, 1966 |
| AcoI | YGGCCR | 3 cut(s) | 171, 258, 877 |
| AcsI | RAATTY | 7 cut(s) | 225, 1426, 1755, 2039, 2225, 2319, 2382 |
| AcuI | CTGAAG | 7 cut(s) | 496, 1383, 1511, 1524, 1533, 1857, 2037 |
| AfaI | GTAC | 9 cut(s) | 105, 716, 1017, 1064, 1124, 1620, 1722, 2646, 2853 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 330, 707, 875, 2111 |
| AflII | CTTAAG | 3 cut(s) | 635, 1292, 1420 |
| AflIII | ACRYGT | 1 cut(s) | 2857 |
| AhlI | ACTAGT | 1 cut(s) | 2728 |
| AjnI | CCWGG | 2 cut(s) | 1116, 1842 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1542, 1574, 2519, 2551 |
| AleI | CACNNNNGTG | 1 cut(s) | 1994 |
| Alw21I | GWGCWC | 5 cut(s) | 644, 1890, 2178, 2883, 2922 |
| Alw26I | GTCTC | 7 cut(s) | 393, 589, 728, 1409, 1600, 2006, 2180 |
| Alw44I | GTGCAC | 1 cut(s) | 1886 |
| AlwI | GGATC | 9 cut(s) | 302, 315, 567, 659, 691, 767, 780, 1339, 1966 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1117, 1340 |
| Aor13HI | TCCGGA | 1 cut(s) | 1749 |
| AoxI | GGCC | 4 cut(s) | 171, 258, 877, 2149 |
| ApaLI | GTGCAC | 1 cut(s) | 1886 |
| ApeKI | GCWGC | 8 cut(s) | 334, 619, 959, 983, 1790, 1793, 2075, 2768 |
| ApoI | RAATTY | 7 cut(s) | 225, 1426, 1755, 2039, 2225, 2319, 2382 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 132, 228, 2594 |
| Asp718I | GGTACC | 1 cut(s) | 103 |
| AspA2I | CCTAGG | 1 cut(s) | 1543 |
| AspLEI | GCGC | 3 cut(s) | 616, 983, 1649 |
| AsuHPI | GGTGA | 4 cut(s) | 1247, 2094, 2654, 2957 |
| AsuII | TTCGAA | 1 cut(s) | 437 |
| AvrII | CCTAGG | 1 cut(s) | 1543 |
| BaeGI | GKGCMC | 3 cut(s) | 869, 1890, 2657 |
| BalI | TGGCCA | 3 cut(s) | 173, 260, 879 |
| BamHI | GGATCC | 2 cut(s) | 307, 772 |
| BanI | GGYRCC | 1 cut(s) | 103 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2582, 2614 |
| BbsI | GAAGAC | 1 cut(s) | 2335 |
| Bbv12I | GWGCWC | 5 cut(s) | 644, 1890, 2178, 2883, 2922 |
| BbvI | GCAGC | 8 cut(s) | 346, 631, 971, 995, 1780, 1802, 2087, 2755 |
| BccI | CCATC | 5 cut(s) | 182, 394, 2087, 3018, 3031 |
| BceAI | ACGGC | 1 cut(s) | 1045 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 427, 461 |
| BciT130I | CCWGG | 2 cut(s) | 1118, 1844 |
| BcoDI | GTCTC | 7 cut(s) | 393, 589, 728, 1409, 1600, 2006, 2180 |
| BcuI | ACTAGT | 1 cut(s) | 2728 |
| BfmI | CTRYAG | 1 cut(s) | 1048 |
| BfrI | CTTAAG | 3 cut(s) | 635, 1292, 1420 |
| BfuAI | ACCTGC | 2 cut(s) | 1526, 2337 |
| BlnI | CCTAGG | 1 cut(s) | 1543 |
| BmcAI | AGTACT | 1 cut(s) | 716 |
| Bme1390I | CCNGG | 2 cut(s) | 1118, 1844 |
| BmiI | GGNNCC | 6 cut(s) | 105, 309, 723, 774, 1482, 2671 |
| BmrFI | CCNGG | 2 cut(s) | 1118, 1844 |
| BmrI | ACTGGG | 1 cut(s) | 2651 |
| BmsI | GCATC | 7 cut(s) | 435, 482, 997, 1283, 1378, 2695, 3060 |
| BmuI | ACTGGG | 1 cut(s) | 2651 |
| BpiI | GAAGAC | 1 cut(s) | 2335 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 46, 78, 2516, 2548 |
| BpmI | CTGGAG | 5 cut(s) | 359, 687, 1139, 1362, 1826 |
| Bpu10I | CCTNAGC | 1 cut(s) | 371 |
| Bpu14I | TTCGAA | 1 cut(s) | 437 |
| BpuEI | CTTGAG | 4 cut(s) | 14, 453, 1847, 1853 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1745 |
| BsaI | GGTCTC | 4 cut(s) | 393, 589, 1409, 2180 |
| BsaJI | CCNNGG | 6 cut(s) | 219, 599, 993, 1543, 2535, 2665 |
| BsaWI | WCCGGW | 3 cut(s) | 775, 1749, 2155 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 685, 713, 715, 743 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 330, 707, 875, 2111 |
| Bse1I | ACTGG | 7 cut(s) | 483, 704, 880, 1258, 1345, 1641, 2657 |
| Bse3DI | GCAATG | 3 cut(s) | 1017, 1100, 1277 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1745 |
| BseAI | TCCGGA | 1 cut(s) | 1749 |
| BseBI | CCWGG | 2 cut(s) | 1118, 1844 |
| BseDI | CCNNGG | 6 cut(s) | 219, 599, 993, 1543, 2535, 2665 |
| BseGI | GGATG | 4 cut(s) | 473, 1186, 1746, 2803 |
| BseJI | GATNNNNATC | 1 cut(s) | 1745 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 330, 707, 875, 2111 |
| BseMI | GCAATG | 3 cut(s) | 1017, 1100, 1277 |
| BseMII | CTCAG | 5 cut(s) | 77, 362, 2175, 2193, 3033 |
| BseNI | ACTGG | 7 cut(s) | 483, 704, 880, 1258, 1345, 1641, 2657 |
| BseRI | GAGGAG | 5 cut(s) | 356, 1666, 2650, 2653, 2682 |
| BseSI | GKGCMC | 3 cut(s) | 869, 1890, 2657 |
| BseXI | GCAGC | 8 cut(s) | 346, 631, 971, 995, 1780, 1802, 2087, 2755 |
| Bsh1236I | CGCG | 1 cut(s) | 1649 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1382 |
| BshFI | GGCC | 4 cut(s) | 173, 260, 879, 2151 |
| BshNI | GGYRCC | 1 cut(s) | 103 |
| BsiEI | CGRYCG | 1 cut(s) | 1382 |
| BsiHKAI | GWGCWC | 5 cut(s) | 644, 1890, 2178, 2883, 2922 |
| BsiSI | CCGG | 3 cut(s) | 776, 1750, 2156 |
| BslFI | GGGAC | 1 cut(s) | 415 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 330, 707, 875, 2111 |
| BsmAI | GTCTC | 7 cut(s) | 393, 589, 728, 1409, 1600, 2006, 2180 |
| BsmFI | GGGAC | 1 cut(s) | 415 |
| BsmI | GAATGC | 3 cut(s) | 291, 371, 2872 |
| BsnI | GGCC | 4 cut(s) | 173, 260, 879, 2151 |
| Bso31I | GGTCTC | 4 cut(s) | 393, 589, 1409, 2180 |
| Bsp119I | TTCGAA | 1 cut(s) | 437 |
| Bsp1286I | GDGCHC | 7 cut(s) | 644, 869, 1890, 2178, 2657, 2883, 2922 |
| Bsp13I | TCCGGA | 1 cut(s) | 1749 |
| Bsp1407I | TGTACA | 2 cut(s) | 1720, 2851 |
| Bsp143I | GATC | 8 cut(s) | 307, 559, 651, 683, 772, 1304, 1331, 1971 |
| Bsp19I | CCATGG | 1 cut(s) | 219 |
| BspACI | CCGC | 5 cut(s) | 617, 1649, 2190, 2899, 2943 |
| BspANI | GGCC | 4 cut(s) | 173, 260, 879, 2151 |
| BspCNI | CTCAG | 5 cut(s) | 76, 363, 2176, 2194, 3034 |
| BspEI | TCCGGA | 1 cut(s) | 1749 |
| BspFNI | CGCG | 1 cut(s) | 1649 |
| BspHI | TCATGA | 2 cut(s) | 2475, 2586 |
| BspLI | GGNNCC | 6 cut(s) | 105, 309, 723, 774, 1482, 2671 |
| BspMAI | CTGCAG | 1 cut(s) | 1052 |
| BspMI | ACCTGC | 2 cut(s) | 1526, 2337 |
| BspPI | GGATC | 9 cut(s) | 302, 315, 567, 659, 691, 767, 780, 1339, 1966 |
| BspQI | GCTCTTC | 1 cut(s) | 2277 |
| BspT104I | TTCGAA | 1 cut(s) | 437 |
| BspT107I | GGYRCC | 1 cut(s) | 103 |
| BspTI | CTTAAG | 3 cut(s) | 635, 1292, 1420 |
| BspTNI | GGTCTC | 4 cut(s) | 393, 589, 1409, 2180 |
| BsrDI | GCAATG | 3 cut(s) | 1017, 1100, 1277 |
| BsrGI | TGTACA | 2 cut(s) | 1720, 2851 |
| BsrI | ACTGG | 7 cut(s) | 483, 704, 880, 1258, 1345, 1641, 2657 |
| BssECI | CCNNGG | 6 cut(s) | 219, 599, 993, 1543, 2535, 2665 |
| BssMI | GATC | 8 cut(s) | 307, 559, 651, 683, 772, 1304, 1331, 1971 |
| BssT1I | CCWWGG | 5 cut(s) | 219, 599, 993, 1543, 2535 |
| Bst2UI | CCWGG | 2 cut(s) | 1118, 1844 |
| Bst4CI | ACNGT | 8 cut(s) | 97, 1073, 1150, 1315, 1380, 1859, 2095, 2458 |
| Bst6I | CTCTTC | 4 cut(s) | 1407, 1509, 1731, 2277 |
| BstAFI | CTTAAG | 3 cut(s) | 635, 1292, 1420 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1802 |
| BstAUI | TGTACA | 2 cut(s) | 1720, 2851 |
| BstBI | TTCGAA | 1 cut(s) | 437 |
| BstC8I | GCNNGC | 6 cut(s) | 148, 979, 1272, 2023, 2211, 2988 |
| BstDEI | CTNAG | 7 cut(s) | 63, 371, 1968, 2184, 2202, 2365, 3042 |
| BstDSI | CCRYGG | 1 cut(s) | 219 |
| BstEII | GGTNACC | 2 cut(s) | 778, 1538 |
| BstF5I | GGATG | 4 cut(s) | 473, 1186, 1746, 2803 |
| BstFNI | CGCG | 1 cut(s) | 1649 |
| BstHHI | GCGC | 3 cut(s) | 616, 983, 1649 |
| BstKTI | GATC | 8 cut(s) | 310, 562, 654, 686, 775, 1307, 1334, 1974 |
| BstMAI | GTCTC | 7 cut(s) | 393, 589, 728, 1409, 1600, 2006, 2180 |
| BstMBI | GATC | 8 cut(s) | 307, 559, 651, 683, 772, 1304, 1331, 1971 |
| BstMCI | CGRYCG | 1 cut(s) | 1382 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 170, 983, 1288, 1646, 1802, 2219, 2777, 2835 |
| BstNI | CCWGG | 2 cut(s) | 1118, 1844 |
| BstNSI | RCATGY | 6 cut(s) | 150, 207, 1274, 1906, 2833, 2861 |
| BstPI | GGTNACC | 2 cut(s) | 778, 1538 |
| BstSCI | CCNGG | 2 cut(s) | 1116, 1842 |
| BstSFI | CTRYAG | 1 cut(s) | 1048 |
| BstSLI | GKGCMC | 3 cut(s) | 869, 1890, 2657 |
| BstUI | CGCG | 1 cut(s) | 1649 |
| BstV1I | GCAGC | 8 cut(s) | 346, 631, 971, 995, 1780, 1802, 2087, 2755 |
| BstV2I | GAAGAC | 1 cut(s) | 2335 |
| BstX2I | RGATCY | 4 cut(s) | 307, 559, 772, 1971 |
| BstYI | RGATCY | 4 cut(s) | 307, 559, 772, 1971 |
| BsuRI | GGCC | 4 cut(s) | 173, 260, 879, 2151 |
| BtgI | CCRYGG | 1 cut(s) | 219 |
| BtsCI | GGATG | 4 cut(s) | 473, 1186, 1746, 2803 |
| BtsI | GCAGTG | 2 cut(s) | 944, 2721 |
| BtsIMutI | CAGTG | 9 cut(s) | 192, 490, 749, 873, 944, 1118, 1634, 2721, 3007 |
| BveI | ACCTGC | 2 cut(s) | 1526, 2337 |
| Cac8I | GCNNGC | 6 cut(s) | 148, 979, 1272, 2023, 2211, 2988 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1117, 1340 |
| CciI | TCATGA | 2 cut(s) | 2475, 2586 |
| CfoI | GCGC | 3 cut(s) | 616, 983, 1649 |
| Csp6I | GTAC | 9 cut(s) | 104, 715, 1016, 1063, 1123, 1619, 1721, 2645, 2852 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2697, 2732 |
| CviQI | GTAC | 9 cut(s) | 104, 715, 1016, 1063, 1123, 1619, 1721, 2645, 2852 |
| DdeI | CTNAG | 7 cut(s) | 63, 371, 1968, 2184, 2202, 2365, 3042 |
| DpnI | GATC | 8 cut(s) | 309, 561, 653, 685, 774, 1306, 1333, 1973 |
| DpnII | GATC | 8 cut(s) | 307, 559, 651, 683, 772, 1304, 1331, 1971 |
| EaeI | YGGCCR | 3 cut(s) | 171, 258, 877 |
| Eam1104I | CTCTTC | 4 cut(s) | 1407, 1509, 1731, 2277 |
| EarI | CTCTTC | 4 cut(s) | 1407, 1509, 1731, 2277 |
| Eco130I | CCWWGG | 5 cut(s) | 219, 599, 993, 1543, 2535 |
| Eco31I | GGTCTC | 4 cut(s) | 393, 589, 1409, 2180 |
| Eco32I | GATATC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 7 cut(s) | 496, 1383, 1511, 1524, 1533, 1857, 2037 |
| Eco91I | GGTNACC | 2 cut(s) | 778, 1538 |
| EcoO65I | GGTNACC | 2 cut(s) | 778, 1538 |
| EcoRI | GAATTC | 2 cut(s) | 2039, 2382 |
| EcoRII | CCWGG | 2 cut(s) | 1116, 1842 |
| EcoRV | GATATC | 1 cut(s) | 91 |
| EcoT14I | CCWWGG | 5 cut(s) | 219, 599, 993, 1543, 2535 |
| EcoT22I | ATGCAT | 2 cut(s) | 1276, 1393 |
| ErhI | CCWWGG | 5 cut(s) | 219, 599, 993, 1543, 2535 |
| FaqI | GGGAC | 1 cut(s) | 415 |
| FokI | GGATG | 4 cut(s) | 460, 1193, 1733, 2810 |
| FspI | TGCGCA | 1 cut(s) | 982 |
| GlaI | GCGC | 3 cut(s) | 615, 982, 1648 |
| GsuI | CTGGAG | 5 cut(s) | 359, 687, 1139, 1362, 1826 |
| HaeIII | GGCC | 4 cut(s) | 173, 260, 879, 2151 |
| HapII | CCGG | 3 cut(s) | 776, 1750, 2156 |
| HhaI | GCGC | 3 cut(s) | 616, 983, 1649 |
| Hin6I | GCGC | 3 cut(s) | 614, 981, 1647 |
| HinP1I | GCGC | 3 cut(s) | 614, 981, 1647 |
| HincII | GTYRAC | 2 cut(s) | 284, 2845 |
| HindII | GTYRAC | 2 cut(s) | 284, 2845 |
| HindIII | AAGCTT | 3 cut(s) | 897, 1295, 2548 |
| HpaI | GTTAAC | 1 cut(s) | 2845 |
| HpaII | CCGG | 3 cut(s) | 776, 1750, 2156 |
| HphI | GGTGA | 4 cut(s) | 1247, 2094, 2654, 2957 |
| Hpy166II | GTNNAC | 8 cut(s) | 284, 749, 1849, 1888, 1900, 2662, 2815, 2845 |
| Hpy8I | GTNNAC | 8 cut(s) | 284, 749, 1849, 1888, 1900, 2662, 2815, 2845 |
| HpyAV | CCTTC | 7 cut(s) | 520, 1047, 1499, 2129, 2174, 2363, 2701 |
| HpyCH4III | ACNGT | 8 cut(s) | 97, 1073, 1150, 1315, 1380, 1859, 2095, 2458 |
| HpyCH4IV | ACGT | 1 cut(s) | 503 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 170, 983, 1288, 1646, 1802, 2219, 2777, 2835 |
| HpyF3I | CTNAG | 7 cut(s) | 63, 371, 1968, 2184, 2202, 2365, 3042 |
| HpySE526I | ACGT | 1 cut(s) | 503 |
| HspAI | GCGC | 3 cut(s) | 614, 981, 1647 |
| Kpn2I | TCCGGA | 1 cut(s) | 1749 |
| KpnI | GGTACC | 1 cut(s) | 107 |
| KspAI | GTTAAC | 1 cut(s) | 2845 |
| Kzo9I | GATC | 8 cut(s) | 307, 559, 651, 683, 772, 1304, 1331, 1971 |
| LguI | GCTCTTC | 1 cut(s) | 2277 |
| LmnI | GCTCC | 4 cut(s) | 721, 1343, 2669, 3017 |
| Lsp1109I | GCAGC | 8 cut(s) | 346, 631, 971, 995, 1780, 1802, 2087, 2755 |
| LweI | GCATC | 7 cut(s) | 435, 482, 997, 1283, 1378, 2695, 3060 |
| MaeII | ACGT | 1 cut(s) | 503 |
| MaeIII | GTNAC | 6 cut(s) | 778, 796, 1253, 1336, 1538, 1859 |
| MalI | GATC | 8 cut(s) | 309, 561, 653, 685, 774, 1306, 1333, 1973 |
| MboI | GATC | 8 cut(s) | 307, 559, 651, 683, 772, 1304, 1331, 1971 |
| MboII | GAAGA | 9 cut(s) | 733, 1424, 1504, 1526, 1534, 1748, 2264, 2340, 3058 |
| MfeI | CAATTG | 4 cut(s) | 48, 1169, 2070, 2514 |
| MflI | RGATCY | 4 cut(s) | 307, 559, 772, 1971 |
| MhlI | GDGCHC | 7 cut(s) | 644, 869, 1890, 2178, 2657, 2883, 2922 |
| MlsI | TGGCCA | 3 cut(s) | 173, 260, 879 |
| MluNI | TGGCCA | 3 cut(s) | 173, 260, 879 |
| MlyI | GAGTC | 6 cut(s) | 64, 1467, 1602, 1826, 2549, 2960 |
| MmeI | TCCRAC | 3 cut(s) | 629, 1069, 2775 |
| Mox20I | TGGCCA | 3 cut(s) | 173, 260, 879 |
| Mph1103I | ATGCAT | 2 cut(s) | 1276, 1393 |
| MroI | TCCGGA | 1 cut(s) | 1749 |
| MroXI | GAANNNNTTC | 3 cut(s) | 132, 228, 2594 |
| MscI | TGGCCA | 3 cut(s) | 173, 260, 879 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1613, 1994 |
| Msp20I | TGGCCA | 3 cut(s) | 173, 260, 879 |
| MspA1I | CMGCKG | 3 cut(s) | 337, 622, 1793 |
| MspCI | CTTAAG | 3 cut(s) | 635, 1292, 1420 |
| MspI | CCGG | 3 cut(s) | 776, 1750, 2156 |
| MspR9I | CCNGG | 2 cut(s) | 1118, 1844 |
| MunI | CAATTG | 4 cut(s) | 48, 1169, 2070, 2514 |
| Mva1269I | GAATGC | 3 cut(s) | 291, 371, 2872 |
| MvaI | CCWGG | 2 cut(s) | 1118, 1844 |
| MvnI | CGCG | 1 cut(s) | 1649 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 170, 983, 1288, 1646, 1802, 2219, 2777, 2835 |
| NcoI | CCATGG | 1 cut(s) | 219 |
| NdeII | GATC | 8 cut(s) | 307, 559, 651, 683, 772, 1304, 1331, 1971 |
| NlaIV | GGNNCC | 6 cut(s) | 105, 309, 723, 774, 1482, 2671 |
| NmeAIII | GCCGAG | 1 cut(s) | 2152 |
| NmuCI | GTSAC | 3 cut(s) | 796, 1253, 1859 |
| NsbI | TGCGCA | 1 cut(s) | 982 |
| NsiI | ATGCAT | 2 cut(s) | 1276, 1393 |
| NspI | RCATGY | 6 cut(s) | 150, 207, 1274, 1906, 2833, 2861 |
| NspV | TTCGAA | 1 cut(s) | 437 |
| OliI | CACNNNNGTG | 1 cut(s) | 1994 |
| PaeI | GCATGC | 2 cut(s) | 150, 1274 |
| PagI | TCATGA | 2 cut(s) | 2475, 2586 |
| PciI | ACATGT | 1 cut(s) | 2857 |
| PciSI | GCTCTTC | 1 cut(s) | 2277 |
| PctI | GAATGC | 3 cut(s) | 291, 371, 2872 |
| PdmI | GAANNNNTTC | 3 cut(s) | 132, 228, 2594 |
| PfeI | GAWTC | 6 cut(s) | 595, 1495, 1951, 2394, 2527, 2749 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 875 |
| PleI | GAGTC | 6 cut(s) | 63, 1467, 1601, 1825, 2548, 2959 |
| PpsI | GAGTC | 6 cut(s) | 63, 1467, 1601, 1825, 2548, 2959 |
| PscI | ACATGT | 1 cut(s) | 2857 |
| Psp6I | CCWGG | 2 cut(s) | 1116, 1842 |
| PspEI | GGTNACC | 2 cut(s) | 778, 1538 |
| PspGI | CCWGG | 2 cut(s) | 1116, 1842 |
| PspN4I | GGNNCC | 6 cut(s) | 105, 309, 723, 774, 1482, 2671 |
| PstI | CTGCAG | 1 cut(s) | 1052 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1117, 1340 |
| PsuI | RGATCY | 4 cut(s) | 307, 559, 772, 1971 |
| PvuII | CAGCTG | 3 cut(s) | 337, 622, 1793 |
| RsaI | GTAC | 9 cut(s) | 105, 716, 1017, 1064, 1124, 1620, 1722, 2646, 2853 |
| RsaNI | GTAC | 9 cut(s) | 104, 715, 1016, 1063, 1123, 1619, 1721, 2645, 2852 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1613, 1994 |
| SapI | GCTCTTC | 1 cut(s) | 2277 |
| Sau3AI | GATC | 8 cut(s) | 307, 559, 651, 683, 772, 1304, 1331, 1971 |
| ScaI | AGTACT | 1 cut(s) | 716 |
| SchI | GAGTC | 6 cut(s) | 64, 1467, 1602, 1826, 2549, 2960 |
| ScrFI | CCNGG | 2 cut(s) | 1118, 1844 |
| SduI | GDGCHC | 7 cut(s) | 644, 869, 1890, 2178, 2657, 2883, 2922 |
| SfaNI | GCATC | 7 cut(s) | 435, 482, 997, 1283, 1378, 2695, 3060 |
| SfcI | CTRYAG | 1 cut(s) | 1048 |
| SfuI | TTCGAA | 1 cut(s) | 437 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1613, 1994 |
| SmlI | CTYRAG | 7 cut(s) | 29, 468, 635, 1292, 1420, 1826, 1832 |
| SmoI | CTYRAG | 7 cut(s) | 29, 468, 635, 1292, 1420, 1826, 1832 |
| SpeI | ACTAGT | 1 cut(s) | 2728 |
| SphI | GCATGC | 2 cut(s) | 150, 1274 |
| SsiI | CCGC | 5 cut(s) | 617, 1649, 2190, 2899, 2943 |
| SspI | AATATT | 2 cut(s) | 1095, 2287 |
| StyD4I | CCNGG | 2 cut(s) | 1116, 1842 |
| StyI | CCWWGG | 5 cut(s) | 219, 599, 993, 1543, 2535 |
| TaaI | ACNGT | 8 cut(s) | 97, 1073, 1150, 1315, 1380, 1859, 2095, 2458 |
| TaiI | ACGT | 1 cut(s) | 506 |
| TaqI | TCGA | 4 cut(s) | 160, 437, 2172, 2922 |
| TatI | WGTACW | 4 cut(s) | 714, 1122, 1720, 2851 |
| TauI | GCSGC | 3 cut(s) | 619, 1652, 2902 |
| TfiI | GAWTC | 6 cut(s) | 595, 1495, 1951, 2394, 2527, 2749 |
| TscAI | CASTG | 9 cut(s) | 199, 490, 756, 880, 944, 1118, 1641, 2721, 3007 |
| TseFI | GTSAC | 3 cut(s) | 796, 1253, 1859 |
| TseI | GCWGC | 8 cut(s) | 334, 619, 959, 983, 1790, 1793, 2075, 2768 |
| Tsp45I | GTSAC | 3 cut(s) | 796, 1253, 1859 |
| TspGWI | ACGGA | 1 cut(s) | 572 |
| TspRI | CASTG | 9 cut(s) | 199, 490, 756, 880, 944, 1118, 1641, 2721, 3007 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 875 |
| Vha464I | CTTAAG | 3 cut(s) | 635, 1292, 1420 |
| VneI | GTGCAC | 1 cut(s) | 1886 |
| XapI | RAATTY | 7 cut(s) | 225, 1426, 1755, 2039, 2225, 2319, 2382 |
| XceI | RCATGY | 6 cut(s) | 150, 207, 1274, 1906, 2833, 2861 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 268, 1999, 3017 |
| XmaJI | CCTAGG | 1 cut(s) | 1543 |
| XmnI | GAANNNNTTC | 3 cut(s) | 132, 228, 2594 |
| ZrmI | AGTACT | 1 cut(s) | 716 |
| Zsp2I | ATGCAT | 2 cut(s) | 1276, 1393 |